Utility of the methylation-sensitive amplified polymorphism (MSAP) marker for detection of DNA methylation polymorphism and epigenetic population structure in a wild barley species (Hordeum brevisubulatum)

Ecological Research

Volumn 23, Issue 5, 2008, Pages 927-930

  Li, Yidan ^a   Shan, Xiaohui ^a   Liu, Xiaoming ^a   Hu, Lanjuan ^a   Guo, Wanli ^a   Liu, Bao ^a  

^a NORTHEAST NORMAL UNIVERSITY   (China)

Author keywords

DNA methylation polymorphism; Epigenetic population structure; Hordeum brevisubulatum; MSAP

Indexed keywords

HORDEUM; HORDEUM BREVISUBULATUM; HORDEUM VULGARE SUBSP. SPONTANEUM;

EID: 50649123171     PISSN: 09123814     EISSN: 14401703     Source Type: Journal    
DOI: 10.1007/s11284-007-0459-8     Document Type: Note

References (21)

1. I Ashikawa 2001 Surveying CpG methylation at 5′-CCGG in the genomes of rice cultivars Plant Mol Biol 45 31 39
2. MT Cervera L Ruiz-Garcia JM Martinez-Zapater 2002 Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers Mol Genet Genomics 268 543 552
3. RT Grant-Downton HG Dickinson 2005 Epigenetics and its implications for plant biology. 1. The epigenetic network in plants Ann Bot (Lond) 96 1143 64
4. R Kalendar J Tanskanen S Immonen E Nevo AH Schulman 2000 Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence Proc Natl Acad Sci USA 97 6603 6607
5. S Kalisz MD Purugganan 2004 Epialleles via DNA methylation: consequences for plant evolution Trends Ecol Evol 19 309 314
6. AL Keyte R Kercifield B Liu JF Wendel 2006 Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.) Heredity 97 444 450
7. Z Lippman B May C Yordan T Singer R Martienssen 2003 Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification PLoS Biol 1 E67
8. B Liu CL Brubaker GR Mergeai RC Cronn JF Wendel 2001 Polyploid formation in cotton is not accompanied by rapid genetic changes Genome 44 321 330
9. ZL Liu FP Han M Tan XH Shan YZ Dong XZ Wang G Fedak S Hao B Liu 2004 Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions Theor Appl Genet 109 200 209
10. M Nei 1973 Analysis of gene diversity in subdivided populations Proc Natl Acad Sci USA 70 3321 3323
11. SH Rangwala EJ Richards 2004 The value-added genome: building and maintaining genomic cytosine methylation landscapes Curr Opin Genet Dev 14 686 691
12. RA Rapp JF Wendel 2005 Epigenetics and plant evolution New Phytol 168 81 91
13. GR Reina-López J Simpson J Ruiz-Herrera 1997 Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphism Mol Genet Genomics 253 703 710
14. Rohlf FJ (2000) NTSYS-pc, numerical taxonomy and multivariate analysis system. Version 2.1. Exeter Publications, New York
15. A Salmon ML Ainouche JF Wendel 2005 Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae) Mol Ecol 14 1163 1175
16. EU Selker 1997 Epigenetic phenomena in filamentous fungi: useful paradigms or repeat-induced confusion? Trends Genet 13 296 301
17. Sneath PHA, Sokal RR (1973) Numerical taxonomy. Freeman, San Francisco, 573 pp
18. MW Vaughn M Tanurdžić Z Lippman H Jiang R Carrasquillo PD Rabinowicz N Dedhia WR McCombie N Agier A Bulski V Colot RW Doerge RA Martienssen 2007 Epigenetic natural variation in Arabidopsis thaliana PLoS Biol 5 1617 1629
19. P Vos R Hogers M Bleeker M Reijans T van de Lee M Hornes A Frijters J Pot J Peleman M Kuiper 1995 AFLP, a new technique for DNA fingerprinting Nucleic Acids Res 23 3307 3314
20. R Waugh K McLean AJ Flavell SR Pearce A Kumar BBT Thomas W Powell 1997 Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence specific amplification polymorphisms (SSAP) Mol Genet Genomics 253 687 694
21. Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1997) POPGENE, the user-friendly shareware for population genetic analysis. Version 1.21. Molecular biology and biotechnology, Centre University of Alberta Canada