AFLP-Based Detection of DNA Methylation

Plant Molecular Biology Reporter

Volumn 18, Issue 4, 2000, Pages 361-368

  Xu, Mingliang ^a   Li, Xiangqian ^a   Korban, Schuyler S ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Amplified fragment length polymorphism (AFLP); Apple; Isoschizomer; Methylation

Indexed keywords

EID: 0034558663     PISSN: 07359640     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02825064     Document Type: Article

References (17)

1. Ballvora A, Hesselbach J, Niewhner J, Dario Leister, Salamini F and Gebhardt C (1995) Marker enrichment and high-resolution map of the segment of potato chromosome VII harbouring the nematode resistance gene Gro1. Mol Gen Genet 249: 82-90.
2. Doerfler W (1983) DNA methylation and gene activity. Annu Rev Biochem 52: 93-124.
3. Gonzalgo ML and Jones PA (1997a) Mutagenic and epigenetic effects of DNA methylation. Mutat Res 386: 107-118.
4. Gonzalgo ML and Jones PA (1997b) Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE). Nucleic Acids Res 25: 2529-2531.
5. Magill JM and Magill CW (1989) DNA methylation in fungi. Dev Genet 10: 63-99.
6. McClelland M, Nelson M and Raschke E (1994) Effect of site-specific modification on restriction edonucleases and DNA modification methyltransferases. Nucleic Acids Res 22: 3640-3659.
7. Meyer P, Niedenhof I and ten Lohuis M (1994) Evidence for cytosine methylation of non-symmetrical sequences in transgenic Petunia hybrida. EMBO J 13: 2084-2088.
8. Money T, Reader S, Qu LJ, Dunford RP and Moore G (1996) AFLP-based mRNA fingerprinting. Nucleic Acids Res 24: 2616.
9. Reyna-López GE, Simpson J and Ruiz-Herrera J (1997) Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol Gen Genet 253: 703-710.
10. Rossi V, Motto M and Pelligrini L (1997) Analysis of the methylation pattern of the maize Opaque-2 (O2) promoter and in vitro binding studies indicate that the O2 B-Zip protein and other endosperm factors can bind to methylated target sequences. J Biol Chem 272: 13758-13765.
11. Thomas CM, Vos P, Zabeau M, Jones DA, Norcott KA, Chadwick BP and Jones JDG (1995) Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum. Plant J 8: 785-794.
12. Ulian EC, Magill JM, Magill CW and Smith RH (1996) DNA methylation and expression of NPT II in transgenic petunias and progeny. Theor Appl Genet 92: 976-981.
13. Ushijima T, Morimura K, Hosoya Y, Okonogi H, Tatematsu M, Sugimura T and Nagao M (1997) Establishment of methylation-sensitive-representational difference analysis and isolation of hypo- and hypermethylated genomic fragments in mouse liver tumors. Proc Natl Acad Sci USA 94: 2284-2289.
14. Vos P, Hogers R, Bleeker M, Reijans M, Lee TV, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M and Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
15. Xiong LZ, Xu CG, Saghai Maroof MA and Zhang QF (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261: 439-446.
16. Xu ML, Melchinger AE, Xia XC and Luebberstedt T (1999) High-resolution mapping of loci conferring resistance to a sugarcane mosaic virus in maize using RFLP, SSR, and AFLP markers. Mol Gen Genet 261: 574-581.
17. Xu ML and Korban SS (2000) Saturation mapping of the apple scab resistance gene Vf using AFLP markers. Theor Appl Genet 101: 844-851.