메뉴 건너뛰기




Volumn 2011, Issue , 2011, Pages

MaizeGDB: Curation and outreach go hand-in-hand

Author keywords

[No Author keywords available]

Indexed keywords

ZEA MAYS;

EID: 80053515344     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bar022     Document Type: Article
Times cited : (70)

References (59)
  • 1
    • 70450202132 scopus 로고    scopus 로고
    • The b73 maize genome: Complexity, diversity, and dynamics
    • Schnable, P. S., Ware, D., Fulton, R. S. et al. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326, 1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1    Ware, D.2    Fulton, R.S.3
  • 2
    • 79959431187 scopus 로고    scopus 로고
    • Choosing a genome browser for a model organism database: Surveying the maize community
    • doi:10.1093/database/baq007
    • Sen, T. Z., Harper, L. C., Schaeffer, M. L. et al. (2010) Choosing a genome browser for a Model Organism Database: surveying the Maize community. Database, 2010, doi:10.1093/database/baq007.
    • (2010) Database, 2010
    • Sen, T.Z.1    Harper, L.C.2    Schaeffer, M.L.3
  • 3
    • 0345869110 scopus 로고    scopus 로고
    • Maizedb: The maize genome database
    • In: Letovsky, S. I. (ed). Kluwer Academic Publishers, Norwell, MA
    • Polacco, M. L. and Coe, E. (1999) MaizeDB: The maize genome database. In: Letovsky, S. I. (ed). Bioinformatics: Databases and Systems. Kluwer Academic Publishers, Norwell, MA, pp. 151-162.
    • (1999) Bioinformatics: Databases and Systems. , pp. 151-162
    • Polacco, M.L.1    Coe, E.2
  • 4
    • 23844452306 scopus 로고    scopus 로고
    • The Maize Genetics and Genomics Database. The community resource for access to diverse maize data
    • DOI 10.1104/pp.104.059196
    • Lawrence, C. J., Seigfried, T. E. and Brendel, V. (2005) The maize genetics and genomics database. The community resource for access to diverse maize data. Plant Physiol., 138, 55-58. (Pubitemid 43138106)
    • (2005) Plant Physiology , vol.138 , Issue.1 , pp. 55-58
    • Lawrence, C.J.1    Seigfried, T.E.2    Brendel, V.3
  • 5
    • 51349115095 scopus 로고    scopus 로고
    • Big data: The future of biocuration
    • Howe, D., Costanzo, M., Fey, P. et al. (2008) Big data: The future of biocuration. Nature, 455, 47-50.
    • (2008) Nature , vol.455 , pp. 47-50
    • Howe, D.1    Costanzo, M.2    Fey, P.3
  • 6
    • 14044254746 scopus 로고    scopus 로고
    • Textpresso: An ontology-based information retrieval and extraction system for biological literature
    • Muller, H. M., Kenny, E. E. and Sternberg, P. W. (2004) Textpresso: An ontology-based information retrieval and extraction system for biological literature. PLoS Biol., 2, e309.
    • (2004) PLoS Biol. , vol.2
    • Muller, H.M.1    Kenny, E.E.2    Sternberg, P.W.3
  • 10
    • 18844403870 scopus 로고    scopus 로고
    • Cornfests, cornfabs and cooperation: The origins and beginnings of the maize genetics cooperation news letter
    • Kass, L. B., Bonneuil, C. and Coe, E. H. Jr. (2005) Cornfests, cornfabs and cooperation: The origins and beginnings of the maize genetics cooperation news letter. Genetics, 169, 1787-1797. (Pubitemid 40695596)
    • (2005) Genetics , vol.169 , Issue.4 , pp. 1787-1797
    • Kass, L.B.1    Bonneuil, C.2    Coe Jr., E.H.3
  • 11
    • 33846101250 scopus 로고    scopus 로고
    • Genetic, physical, maps, and database resources for maize
    • Coe, E. and Schaeffer, M. (2005) Genetic, physical, maps, and database resources for maize. Maydica, 50, 285-303.
    • (2005) Maydica , vol.50 , pp. 285-303
    • Coe, E.1    Schaeffer, M.2
  • 13
    • 69249223097 scopus 로고    scopus 로고
    • Maizegdb: The maize model organism database for basic, translational, and applied research
    • Article ID 496957
    • Lawrence, C. J., Harper, L. C., Schaeffer, M. L. et al. (2008) MaizeGDB: The maize model organism database for basic, translational, and applied research. Int. J. Plant Genomics, 2008, Article ID 496957.
    • (2008) Int. J. Plant Genomics, 2008
    • Lawrence, C.J.1    Harper, L.C.2    Schaeffer, M.L.3
  • 15
    • 75549088763 scopus 로고    scopus 로고
    • Soybase the usda-Ars soybean genetics and genomics database
    • Grant, D., Nelson, R. T., Cannon, S. B. et al. SoyBase, the USDA-ARS soybean genetics and genomics database. Nucleic Acids Res., 38, D843-D846.
    • Nucleic Acids Res. , vol.38
    • Grant, D.1    Nelson, R.T.2    Cannon, S.B.3
  • 18
    • 68349133261 scopus 로고    scopus 로고
    • From dwarves to giants? Plant height manipulation for biomass yield
    • Salas Fernandez, M. G., Becraft, P. W., Yin, Y. et al. (2009) From dwarves to giants? Plant height manipulation for biomass yield. Trends Plant Sci., 14, 454-461.
    • (2009) Trends Plant Sci. , vol.14 , pp. 454-461
    • Salas Fernandez, M.G.1    Becraft, P.W.2    Yin, Y.3
  • 19
    • 66249088700 scopus 로고    scopus 로고
    • High-Throughput linkage analysis of mutator insertion sites in maize
    • Yi, G., Luth, D., Goodman, T. D. et al. (2009) High-Throughput linkage analysis of Mutator insertion sites in maize. Plant J., 58, 883-892.
    • (2009) Plant J. , vol.58 , pp. 883-892
    • Yi, G.1    Luth, D.2    Goodman, T.D.3
  • 21
    • 64549158918 scopus 로고    scopus 로고
    • Kernel composition, starch structure, and enzyme digestibility of opaque-2 maize and quality protein maize
    • Hasjim, J., Srichuwong, S., Scott, M. P. et al. (2009) Kernel composition, starch structure, and enzyme digestibility of opaque-2 maize and quality protein maize. J. Agric. Food Chem., 57, 2049-2055.
    • (2009) J. Agric. Food Chem. , vol.57 , pp. 2049-2055
    • Hasjim, J.1    Srichuwong, S.2    Scott, M.P.3
  • 22
    • 77954562499 scopus 로고    scopus 로고
    • Resistant-starch formation in high-Amylose maize starch during kernel development
    • Jiang, H., Lio, J., Blanco, M. et al. Resistant-starch formation in high-Amylose maize starch during kernel development. J. Agric. Food Chem., 58, 8043-8047.
    • J. Agric. Food Chem. , vol.58 , pp. 8043-8047
    • Jiang, H.1    Lio, J.2    Blanco, M.3
  • 24
    • 77955884311 scopus 로고    scopus 로고
    • Genome-wide distribution of transposed dissociation elements in maize
    • Vollbrecht, E., Duvick, J., Schares, J. P. et al. (2010) Genome-wide distribution of transposed Dissociation elements in maize. Plant Cell, 22, 1667-1685.
    • (2010) Plant Cell , vol.22 , pp. 1667-1685
    • Vollbrecht, E.1    Duvick, J.2    Schares, J.P.3
  • 25
    • 77953195378 scopus 로고    scopus 로고
    • Spatial configuration of transposable element ac termini affects their ability to induce chromosomal breakage in maize
    • Yu, C., Zhang, J., Pulletikurti, V. et al. (2010) Spatial configuration of transposable element Ac termini affects their ability to induce chromosomal breakage in maize. Plant Cell, 22, 744-754.
    • (2010) Plant Cell , vol.22 , pp. 744-754
    • Yu, C.1    Zhang, J.2    Pulletikurti, V.3
  • 26
    • 77951239484 scopus 로고    scopus 로고
    • The maize sbp-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries
    • Chuck, G., Whipple, C., Jackson, D. et al. (2010) The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries. Development, 137, 1243-1250.
    • (2010) Development , vol.137 , pp. 1243-1250
    • Chuck, G.1    Whipple, C.2    Jackson, D.3
  • 27
    • 78651262135 scopus 로고    scopus 로고
    • Emergence and patterning of the five cell types of the zea mays anther locule
    • Kelliher, T. and Walbot, V. (2011) Emergence and patterning of the five cell types of the Zea mays anther locule. Dev. Biol., 350, 32-49.
    • (2011) Dev. Biol. , vol.350 , pp. 32-49
    • Kelliher, T.1    Walbot, V.2
  • 28
    • 62549087063 scopus 로고    scopus 로고
    • Maize AMEIOTIC1 is essential for multiple early meiotic processes and likely required for the initiation of meiosis
    • Pawlowski, W. P., Wang, C. J., Golubovskaya, I. N. et al. (2009) Maize AMEIOTIC1 is essential for multiple early meiotic processes likely required for the initiation of meiosis. Proc. Natl Acad. Sci. U.S.A. 106 3603-3608.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 3603-3608
    • Pawlowski, W.P.1    Wang, C.J.2    Golubovskaya, I.N.3
  • 29
    • 77954741256 scopus 로고    scopus 로고
    • Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs
    • Woodhouse, M. R., Schnable, J. C., Pedersen, B. S. et al. (2010) Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol., 8, e1000409.
    • (2010) PLoS Biol. , vol.8
    • Woodhouse, M.R.1    Schnable, J.C.2    Pedersen, B.S.3
  • 30
    • 77955601269 scopus 로고    scopus 로고
    • RNAmediated trans-communication can establish paramutation at the b1 locus in maize
    • Arteaga-Vazquez, M., Sidorenko, L., Rabanal, F. A. et al. RNAmediated trans-communication can establish paramutation at the b1 locus in maize. Proc. Natl Acad. Sci. USA, 107, 12986-12991.
    • Proc. Natl Acad. Sci. USA , vol.107 , pp. 12986-12991
    • Arteaga-Vazquez, M.1    Sidorenko, L.2    Rabanal, F.A.3
  • 31
    • 70350633812 scopus 로고    scopus 로고
    • Plant smu-1 and smu-2 homologues regulate pre-mrna splicing and multiple aspects of development
    • Chung, T., Wang, D., Kim, C. S. et al. (2009) Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development. Plant Physiol., 151, 1498-1512.
    • (2009) Plant Physiol. , vol.151 , pp. 1498-1512
    • Chung, T.1    Wang, D.2    Kim, C.S.3
  • 32
    • 73649094751 scopus 로고    scopus 로고
    • Sequencing, mapping, and analysis of 27 455 maize full-length cdnas
    • Soderlund, C., Descour, A., Kudrna, D. et al. (2009) Sequencing, mapping, and analysis of 27 455 maize full-length cDNAs. PLoS Genet., 5, e1000740.
    • (2009) PLoS Genet. , vol.5
    • Soderlund, C.1    Descour, A.2    Kudrna, D.3
  • 33
    • 73649087948 scopus 로고    scopus 로고
    • The physical and genetic framework of the maize b73 genome
    • Wei, F., Zhang, J., Zhou, S. et al. (2009) The physical and genetic framework of the maize B73 genome. PLoS Genet., 5, e1000715.
    • (2009) PLoS Genet. , vol.5
    • Wei, F.1    Zhang, J.2    Zhou, S.3
  • 34
    • 77949326869 scopus 로고    scopus 로고
    • Heterosis is prevalent for multiple traits in diverse maize germplasm
    • Flint-Garcia, S. A., Buckler, E. S., Tiffin, P. et al. (2009) Heterosis is prevalent for multiple traits in diverse maize germplasm. PLoS One, 4, e7433.
    • (2009) PLoS One , vol.4
    • Flint-Garcia, S.A.1    Buckler, E.S.2    Tiffin, P.3
  • 35
    • 70450204614 scopus 로고    scopus 로고
    • A first-generation haplotype map of maize
    • Gore, M. A., Chia, J. M., Elshire, R. J. et al. (2009) A first-generation haplotype map of maize. Science, 326, 1115-1117.
    • (2009) Science , vol.326 , pp. 1115-1117
    • Gore, M.A.1    Chia, J.M.2    Elshire, R.J.3
  • 36
    • 69949178699 scopus 로고    scopus 로고
    • Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize
    • Han, F., Gao, Z. and Birchler, J. A. (2009) Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize. Plant Cell, 21, 1929-1939.
    • (2009) Plant Cell , vol.21 , pp. 1929-1939
    • Han, F.1    Gao, Z.2    Birchler, J.A.3
  • 37
    • 76649090968 scopus 로고    scopus 로고
    • Density-dependent and density-independent mortality of the western corn rootworm: Impact on dose calculations of rootworm-resistant bt corn
    • Hibbard, B. E., Meihls, L. N., Ellersieck, M. R. et al. Density-dependent and density-independent mortality of the western corn rootworm: impact on dose calculations of rootworm-resistant Bt corn. J. Econ. Entomol., 103, 77-84.
    • J. Econ. Entomol. , vol.103 , pp. 77-84
    • Hibbard, B.E.1    Meihls, L.N.2    Ellersieck, M.R.3
  • 38
    • 68449094455 scopus 로고    scopus 로고
    • Genetic properties of the maize nested association mapping population
    • McMullen, M. D., Kresovich, S., Villeda, H. S. et al. (2009) Genetic properties of the maize nested association mapping population. Science, 325, 737-740.
    • (2009) Science , vol.325 , pp. 737-740
    • McMullen, M.D.1    Kresovich, S.2    Villeda, H.S.3
  • 40
    • 58449130508 scopus 로고    scopus 로고
    • Suppressor of sessile spikelets1 functions in the ramosa pathway controlling meristem determinacy in maize
    • Wu, X., Skirpan, A. and McSteen, P. (2009) Suppressor of sessile spikelets1 functions in the ramosa pathway controlling meristem determinacy in maize. Plant Physiol., 149, 205-219.
    • (2009) Plant Physiol. , vol.149 , pp. 205-219
    • Wu, X.1    Skirpan, A.2    McSteen, P.3
  • 41
    • 77950983977 scopus 로고    scopus 로고
    • Complexity and coordination of root growth at low water potentials: Recent advances from transcriptomic and proteomic analyses
    • Yamaguchi, M. and Sharp, R. E. (2010) Complexity and coordination of root growth at low water potentials: recent advances from transcriptomic and proteomic analyses. Plant Cell Environ., 33, 590-603.
    • (2010) Plant Cell Environ. , vol.33 , pp. 590-603
    • Yamaguchi, M.1    Sharp, R.E.2
  • 42
    • 1542653183 scopus 로고    scopus 로고
    • Maintaining collections of mutants for plant functional genomics
    • Scholl, R., Sachs, M. M. and Ware, D. (2003) Maintaining collections of mutants for plant functional genomics. Methods Mol. Biol., 236, 311-326.
    • (2003) Methods Mol. Biol. , vol.236 , pp. 311-326
    • Scholl, R.1    Sachs, M.M.2    Ware, D.3
  • 43
    • 38349114236 scopus 로고    scopus 로고
    • Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification
    • Harjes, C. E., Rocheford, T. R., Bai, L. et al. (2008) Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science, 319, 330-333.
    • (2008) Science , vol.319 , pp. 330-333
    • Harjes, C.E.1    Rocheford, T.R.2    Bai, L.3
  • 44
    • 32544450121 scopus 로고    scopus 로고
    • Genetic and QTL analysis of maize tassel and ear inflorescence architecture
    • DOI 10.1007/s00122-005-0133-x
    • Upadyayula, N., da Silva, H. S., Bohn, M. O. et al. (2006) Genetic and QTL analysis of maize tassel and ear inflorescence architecture. Theor. Appl. Genet., 112, 592-606. (Pubitemid 43234484)
    • (2006) Theoretical and Applied Genetics , vol.112 , Issue.4 , pp. 592-606
    • Upadyayula, N.1    Da Silva, H.S.2    Bohn, M.O.3    Rocheford, T.R.4
  • 46
    • 78049338441 scopus 로고    scopus 로고
    • Genome-wide patterns of genetic variation among elite maize inbred lines
    • Lai, J., Li, R., Xu, X. et al. (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat. Genet., 42, 1027-1030.
    • (2010) Nat. Genet. , vol.42 , pp. 1027-1030
    • Lai, J.1    Li, R.2    Xu, X.3
  • 47
    • 77949543756 scopus 로고    scopus 로고
    • The locus lookup tool at maizegdb: Identification of genomic regions in maize by integrating sequence information with physical and genetic maps
    • Andorf, C. M., Lawrence, C. J., Harper, L. C. et al. (2010) The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps. Bioinformatics, 26, 434-436.
    • (2010) Bioinformatics , vol.26 , pp. 434-436
    • Andorf, C.M.1    Lawrence, C.J.2    Harper, L.C.3
  • 48
    • 77949551716 scopus 로고    scopus 로고
    • Maizegdb becomes 'sequence-centric'
    • doi:10.1093/database/bap020
    • Sen, T. Z., Andorf, C. M., Schaeffer, M. L. et al. (2009) MaizeGDB becomes 'sequence-centric'. Database, 2009, doi:10.1093/database/bap020.
    • (2009) Database, 2009
    • Sen, T.Z.1    Andorf, C.M.2    Schaeffer, M.L.3
  • 49
    • 31844439994 scopus 로고    scopus 로고
    • Steady-state transposon mutagenesis in inbred maize
    • McCarty, D. R., Settles, A. M., Suzuki, M. et al. (2005) Steady-state transposon mutagenesis in inbred maize. Plant J., 44, 52-61.
    • (2005) Plant J. , vol.44 , pp. 52-61
    • McCarty, D.R.1    Settles, A.M.2    Suzuki, M.3
  • 51
    • 79955875150 scopus 로고    scopus 로고
    • Genome-wide atlas of transcription during maize development
    • epub ahead of print; doi: 10.1111/j.1365-313 X.2011.04527.x), March 9, 2009
    • Sekhon, R. S., Lin, H., Childs, K. L. et al. (2011) Genome-wide atlas of transcription during maize development. Plant J., March 9, 2009 (epub ahead of print; doi: 10.1111/j.1365-313 X.2011.04527.x).
    • (2011) Plant J.
    • Sekhon, R.S.1    Lin, H.2    Childs, K.L.3
  • 53
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S. F., Gish, W., Miller, W. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3
  • 54
    • 33747343900 scopus 로고    scopus 로고
    • Yrgate: A web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes
    • Wilkerson, M. D., Schlueter, S. D. and Brendel, V. (2006) yrGATE: A web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes. Genome Biol., 7, R58.
    • (2006) Genome Biol. , vol.7
    • Wilkerson, M.D.1    Schlueter, S.D.2    Brendel, V.3
  • 55
    • 33750452293 scopus 로고    scopus 로고
    • Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction
    • DOI 10.1534/genetics.106.060467
    • Luce, A. C., Sharma, A., Mollere, O. S. et al. (2006) Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction. Genetics, 174, 1057-1061. (Pubitemid 44656489)
    • (2006) Genetics , vol.174 , Issue.2 , pp. 1057-1061
    • Luce, A.C.1    Sharma, A.2    Mollere, O.S.B.3    Wolfgruber, T.K.4    Nagaki, K.5    Jiang, J.6    Presting, G.G.7    Dawe, R.K.8
  • 57
    • 78649488563 scopus 로고    scopus 로고
    • The developmental dynamics of the maize leaf transcriptome
    • Li, P., Ponnala, L., Gandotra, N. et al. (2010) The developmental dynamics of the maize leaf transcriptome. Nat. Genet., 42, 1060-1067.
    • (2010) Nat. Genet. , vol.42 , pp. 1060-1067
    • Li, P.1    Ponnala, L.2    Gandotra, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.