-
1
-
-
77955482238
-
Paramutation in maize: RNA mediated trans-generational gene silencing
-
Arteaga-Vazquez MA, Chandler VL (2010) Paramutation in maize: RNA mediated trans-generational gene silencing. Curr Opin Genet Dev 20:156-163.
-
(2010)
Curr Opin Genet Dev
, vol.20
, pp. 156-163
-
-
Arteaga-Vazquez, M.A.1
Chandler, V.L.2
-
2
-
-
0025307383
-
Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues
-
Goff SA, et al. (1990) Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues. EMBO J 9:2517-2522.
-
(1990)
EMBO J
, vol.9
, pp. 2517-2522
-
-
Goff, S.A.1
-
3
-
-
0001664780
-
A regular and continuing conversion-type phenomenon at the B locus in maize
-
Coe EH (1959) A regular and continuing conversion-type phenomenon at the B locus in maize. Proc Natl Acad Sci USA 45:828-832.
-
(1959)
Proc Natl Acad Sci USA
, vol.45
, pp. 828-832
-
-
Coe, E.H.1
-
4
-
-
33746363573
-
An RNA-dependent RNA polymerase is required for paramutation in maize
-
Alleman M, et al. (2006) An RNA-dependent RNA polymerase is required for paramutation in maize. Nature 442:295-298.
-
(2006)
Nature
, vol.442
, pp. 295-298
-
-
Alleman, M.1
-
5
-
-
0034353111
-
Mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci
-
Dorweiler JE, et al. (2000) mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci. Plant Cell 12:2101-2118.
-
(2000)
Plant Cell
, vol.12
, pp. 2101-2118
-
-
Dorweiler, J.E.1
-
6
-
-
0035154874
-
Genetic factors required to maintain repression of a paramutagenic maize pl1 allele
-
Hollick JB, Chandler VL (2001) Genetic factors required to maintain repression of a paramutagenic maize pl1 allele. Genetics 157:369-378.
-
(2001)
Genetics
, vol.157
, pp. 369-378
-
-
Hollick, J.B.1
Chandler, V.L.2
-
7
-
-
33750244877
-
Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors
-
Woodhouse MR, Freeling M, Lisch D (2006) Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors. PLoS Biol 4:e339.
-
(2006)
PLoS Biol
, vol.4
-
-
Woodhouse, M.R.1
Freeling, M.2
Lisch, D.3
-
8
-
-
61349107326
-
RNA polymerase IV functions in paramutation in Zea mays
-
Erhard KF, Jr, et al. (2009) RNA polymerase IV functions in paramutation in Zea mays. Science 323:1201-1205.
-
(2009)
Science
, vol.323
, pp. 1201-1205
-
-
Erhard Jr., K.F.1
-
9
-
-
70149109627
-
Production and processing of siRNA precursor transcripts from the highly repetitive maize genome
-
Hale CJ, Erhard KF, Jr, Lisch D, Hollick JB (2009) Production and processing of siRNA precursor transcripts from the highly repetitive maize genome. PLoS Genet 5: e1000598.
-
(2009)
PLoS Genet
, vol.5
-
-
Hale, C.J.1
Erhard Jr., K.F.2
Lisch, D.3
Hollick, J.B.4
-
11
-
-
77950417414
-
Transgenic expression of CBBP, a CXC domain protein, establishes paramutation in maize
-
Brzeska K, Brzeski J, Smith J (2010) Chandler VL. Transgenic expression of CBBP, a CXC domain protein, establishes paramutation in maize. Proc Natl Acad Sci USA 107: 5516-5521.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5516-5521
-
-
Brzeska, K.1
Brzeski, J.2
Smith, J.3
Chandler, V.L.4
-
12
-
-
61849138270
-
RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene
-
Sidorenko L, Chandler V (2008) RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics 180:1983-1993.
-
(2008)
Genetics
, vol.180
, pp. 1983-1993
-
-
Sidorenko, L.1
Chandler, V.2
-
13
-
-
73649118150
-
Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs
-
Jia Y, et al. (2009) Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet 5:e1000737.
-
(2009)
PLoS Genet
, vol.5
-
-
Jia, Y.1
-
14
-
-
54449085115
-
Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant
-
Nobuta K, et al. (2008) Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Proc Natl Acad Sci USA 105: 14958-14963.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14958-14963
-
-
Nobuta, K.1
-
15
-
-
66149176899
-
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
-
Wang X, et al. (2009) Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 21:1053-1069.
-
(2009)
Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.1
-
16
-
-
0037197916
-
A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing
-
Lisch D, Carey CC, Dorweiler JE, Chandler VL (2002) A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing. Proc Natl Acad Sci USA 99:6130-6135.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6130-6135
-
-
Lisch, D.1
Carey, C.C.2
Dorweiler, J.E.3
Chandler, V.L.4
-
17
-
-
33746459425
-
Transcriptionally silenced transgenes in maize are activated by three mutations defective in paramutation
-
DOI 10.1534/genetics.106.058669
-
McGinnis KM, Springer C, Lin Y, Carey CC, Chandler V (2006) Transcriptionally silenced transgenes in maize are activated by three mutations defective in paramutation. Genetics 173:1637-1647. (Pubitemid 44127665)
-
(2006)
Genetics
, vol.173
, Issue.3
, pp. 1637-1647
-
-
McGinnis, K.M.1
Springer, C.2
Lin, Y.3
Carey, C.C.4
Chandler, V.5
-
18
-
-
33644769152
-
The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize
-
DOI 10.1534/genetics.105.051383
-
Woodhouse MR, Freeling M, Lisch D (2006) The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize. Genetics 172:579-592. (Pubitemid 43345517)
-
(2006)
Genetics
, vol.172
, Issue.1
, pp. 579-592
-
-
Woodhouse, M.R.1
Freeling, M.2
Lisch, D.3
-
19
-
-
0035093607
-
Transgene-induced silencing identifies sequences involved in the establishment of paramutation of the maize p1 gene
-
Sidorenko LV, Peterson T (2001) Transgene-induced silencing identifies sequences involved in the establishment of paramutation of the maize p1 gene. Plant Cell 13: 319-335.
-
(2001)
Plant Cell
, vol.13
, pp. 319-335
-
-
Sidorenko, L.V.1
Peterson, T.2
-
20
-
-
0036682518
-
Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation
-
DOI 10.1101/gad.1006702
-
Stam M, Belele C, Dorweiler JE, Chandler VL (2002) Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation. Genes Dev 16:1906-1918. (Pubitemid 34832920)
-
(2002)
Genes and Development
, vol.16
, Issue.15
, pp. 1906-1918
-
-
Stam, M.1
Belele, C.2
Dorweiler, J.E.3
Chandler, V.L.4
-
21
-
-
0036811708
-
The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences
-
Stam M, et al. (2002) The regulatory regions required for B′ paramutation and expression are located far upstream of the maize b1 transcribed sequences. Genetics 162:917-930. (Pubitemid 35365051)
-
(2002)
Genetics
, vol.162
, Issue.2
, pp. 917-930
-
-
Stam, M.1
Belele, C.2
Ramakrishna, W.3
Dorweiler, J.E.4
Bennetzen, J.L.5
Chandler, V.L.6
-
23
-
-
66449105851
-
Tissue- and expression level-specific chromatin looping at maize b1 epialleles
-
Louwers M, et al. (2009) Tissue- and expression level-specific chromatin looping at maize b1 epialleles. Plant Cell 21:832-842.
-
(2009)
Plant Cell
, vol.21
, pp. 832-842
-
-
Louwers, M.1
-
24
-
-
77954891466
-
The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation
-
10.1111/j.1365-313X.2010.04245.x
-
Haring M, et al. (2010) The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation. Plant J, 10.1111/j.1365-313X.2010. 04245.x.
-
(2010)
Plant J
-
-
Haring, M.1
-
25
-
-
58749097426
-
Small RNAs in transcriptional gene silencing and genome defence
-
Moazed D (2009) Small RNAs in transcriptional gene silencing and genome defence. Nature 457:413-420.
-
(2009)
Nature
, vol.457
, pp. 413-420
-
-
Moazed, D.1
-
26
-
-
58749096360
-
On the road to reading the RNA-interference code
-
Siomi H, Siomi MC (2009) On the road to reading the RNA-interference code. Nature 457:396-404.
-
(2009)
Nature
, vol.457
, pp. 396-404
-
-
Siomi, H.1
Siomi, M.C.2
-
27
-
-
73649130942
-
A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes
-
Sidorenko L, et al. (2009) A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes. PLoS Genet 5:e1000725.
-
(2009)
PLoS Genet
, vol.5
-
-
Sidorenko, L.1
-
28
-
-
0019129833
-
The use of alpha-amanitin to inhibit in vivo RNA synthesis and germination in wheat embryos
-
Jendrisak J (1980) The use of alpha-amanitin to inhibit in vivo RNA synthesis and germination in wheat embryos. J Biol Chem 255:8529-8533.
-
(1980)
J Biol Chem
, vol.255
, pp. 8529-8533
-
-
Jendrisak, J.1
-
30
-
-
0001402506
-
The properties, origin, and mechanism of conversion-type inheritance at the B locus in maize
-
Coe EH (1966) The properties, origin, and mechanism of conversion-type inheritance at the B locus in maize. Genetics 53:1035-1063.
-
(1966)
Genetics
, vol.53
, pp. 1035-1063
-
-
Coe, E.H.1
-
31
-
-
0029023091
-
Sequences required for paramutation of the maize b gene map to a region containing the promoter and upstream sequences
-
Patterson GI, Kubo KM, Shroyer T, Chandler VL (1995) Sequences required for paramutation of the maize b gene map to a region containing the promoter and upstream sequences. Genetics 140:1389-1406.
-
(1995)
Genetics
, vol.140
, pp. 1389-1406
-
-
Patterson, G.I.1
Kubo, K.M.2
Shroyer, T.3
Chandler, V.L.4
-
32
-
-
0026440778
-
Allelic diversity of the maize B regulatory gene: Different leader and promoter sequences of two B alleles determine distinct tissue specificities of anthocyanin production
-
Radicella JP, Brown D, Tolar LA, Chandler VL (1992) Allelic diversity of the maize B regulatory gene: Different leader and promoter sequences of two B alleles determine distinct tissue specificities of anthocyanin production. Genes Dev 6:2152-2164.
-
(1992)
Genes Dev
, vol.6
, pp. 2152-2164
-
-
Radicella, J.P.1
Brown, D.2
Tolar, L.A.3
Chandler, V.L.4
-
33
-
-
32944461742
-
Transcriptional gene silencing as a tool for uncovering gene function in maize
-
DOI 10.1111/j.1365-313X.2005.02492.x
-
Cigan AM, Unger-Wallace E, Haug-Collet K (2005) Transcriptional gene silencing as a tool for uncovering gene function in maize. Plant J 43:929-940. (Pubitemid 43922155)
-
(2005)
Plant Journal
, vol.43
, Issue.6
, pp. 929-940
-
-
Mark Cigan, A.1
Unger-Wallace, E.2
Haug-Collet, K.3
-
34
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen X (2009) Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 25:21-44.
-
(2009)
Annu Rev Cell Dev Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
35
-
-
56649102198
-
Feminized tassels of maize mop1 and ts1 mutants exhibit altered levels of miR156 and specific SBP-box genes
-
Hultquist JF, Dorweiler JE (2008) Feminized tassels of maize mop1 and ts1 mutants exhibit altered levels of miR156 and specific SBP-box genes. Planta 229:99-113.
-
(2008)
Planta
, vol.229
, pp. 99-113
-
-
Hultquist, J.F.1
Dorweiler, J.E.2
-
36
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
Axtell MJ, Bartel DP (2005) Antiquity of microRNAs and their targets in land plants. Plant Cell 17:1658-1673.
-
(2005)
Plant Cell
, vol.17
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
37
-
-
33750373240
-
Temporal regulation of shoot development in Arabidopsis thaliana by miRr156 and its target SPL3
-
DOI 10.1242/dev.02521
-
Wu G, Poethig RS (2006) Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. Development 133:3539-3547. (Pubitemid 44614278)
-
(2006)
Development
, vol.133
, Issue.18
, pp. 3539-3547
-
-
Wu, G.1
Poethig, R.S.2
-
38
-
-
34047174556
-
The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
-
DOI 10.1038/ng2001, PII NG2001
-
Chuck G, Cigan AM, Saeteurn K, Hake S (2007) The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA. Nat Genet 39:544-549. (Pubitemid 46514780)
-
(2007)
Nature Genetics
, vol.39
, Issue.4
, pp. 544-549
-
-
Chuck, G.1
Cigan, A.M.2
Saeteurn, K.3
Hake, S.4
-
40
-
-
65249148019
-
RNA-mediated chromatin-based silencing in plants
-
Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJ (2009) RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 21:367-376.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 367-376
-
-
Matzke, M.1
Kanno, T.2
Daxinger, L.3
Huettel, B.4
Matzke, A.J.5
-
41
-
-
34447118910
-
Physical and functional coupling of RNA-dependent RNA polymerase and Dicer in the biogenesis of endogenous siRNAs
-
Lee SR, Collins K (2007) Physical and functional coupling of RNA-dependent RNA polymerase and Dicer in the biogenesis of endogenous siRNAs. Nat Struct Mol Biol 14: 604-610.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 604-610
-
-
Lee, S.R.1
Collins, K.2
-
42
-
-
73349109162
-
A Pol V-mediated silencing, independent of RNA-directed DNA methylation, applies to 5S rDNA
-
Douet J, Tutois S, Tourmente S (2009) A Pol V-mediated silencing, independent of RNA-directed DNA methylation, applies to 5S rDNA. PLoS Genet 5:e1000690.
-
(2009)
PLoS Genet
, vol.5
-
-
Douet, J.1
Tutois, S.2
Tourmente, S.3
-
43
-
-
68449100991
-
RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway
-
Pontes O, Costa-Nunes P, Vithayathil P, Pikaard CS (2009) RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway. Mol Plant 2:700-710.
-
(2009)
Mol Plant
, vol.2
, pp. 700-710
-
-
Pontes, O.1
Costa-Nunes, P.2
Vithayathil, P.3
Pikaard, C.S.4
-
44
-
-
58149347080
-
A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation
-
Daxinger L, et al. (2009) A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J 28:48-57.
-
(2009)
EMBO J
, vol.28
, pp. 48-57
-
-
Daxinger, L.1
-
46
-
-
3042801584
-
Chromatin conversations: Mechanisms and implications of paramutation
-
Chandler VL, Stam M (2004) Chromatin conversations: Mechanisms and implications of paramutation. Nat Rev Genet 5:532-544.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 532-544
-
-
Chandler, V.L.1
Stam, M.2
-
47
-
-
19944428174
-
Transgene-induced RNA interference as a tool for plant functional genomics
-
McGinnis K, et al. (2005) Transgene-induced RNA interference as a tool for plant functional genomics. Methods Enzymol 392:1-24.
-
(2005)
Methods Enzymol
, vol.392
, pp. 1-24
-
-
McGinnis, K.1
-
48
-
-
0036000038
-
Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system
-
Frame BR, et al. (2002) Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system. Plant Physiol 129:13-22.
-
(2002)
Plant Physiol
, vol.129
, pp. 13-22
-
-
Frame, B.R.1
-
49
-
-
0003632935
-
-
(Iowa State Univ Press, Ames, Iowa), 7th Ed
-
Snedecor GW, Cochran WG (1980) Statistical Methods (Iowa State Univ Press, Ames, Iowa), 7th Ed, p 112.
-
(1980)
Statistical Methods
, pp. 112
-
-
Snedecor, G.W.1
Cochran, W.G.2
-
50
-
-
0027490840
-
Paramutation, an allelic interaction, is associated with a stable and heritable reduction of transcription of the maize b regulatory gene
-
Patterson GI, Thorpe CJ, Chandler VL (1993) Paramutation, an allelic interaction, is associated with a stable and heritable reduction of transcription of the maize b regulatory gene. Genetics 135:881-894.
-
(1993)
Genetics
, vol.135
, pp. 881-894
-
-
Patterson, G.I.1
Thorpe, C.J.2
Chandler, V.L.3
|