Genetic networking of the Bemisia tabaci cryptic species complex reveals pattern of biological invasions

PLoS ONE

Volumn 6, Issue 10, 2011, Pages

  de Barro, Paul ^a   Ahmed, Muhammad ^b  

^a CSIRO   (Australia)

^b UNIVERSITY OF PRETORIA   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C OXIDASE;

ARTICLE; GENE REGULATORY NETWORK; GENE SEQUENCE; GENEALOGY; GENETIC VARIABILITY; HAPLOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENY; SEQUENCE ALIGNMENT; SPECIES INVASION; SWEET POTATO WHITEFLY; ANIMAL; CLASSIFICATION; ENZYMOLOGY; GENE; GENETICS; HEMIPTERA; INTRODUCED SPECIES; MITOCHONDRION; MOLECULAR GENETICS;

BEMISIA TABACI;

ANIMALS; ELECTRON TRANSPORT COMPLEX IV; GENES, INSECT; GENETIC VARIATION; HAPLOTYPES; HEMIPTERA; INTRODUCED SPECIES; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; PHYLOGENY;

EID: 80053445701     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0025579     Document Type: Article

References (71)

1. Cracraft J, (1983) Species concepts and speciation analysis. Curr Ornithol 1: 159-187.
2. de Queiroz K, (1999) The general lineage concept of species and the defining properties of the species category. In: Wilson RA, editors. Species: New interdisciplinary essays Cambridge, Massachusetts MIT Press pp. 49-89.
3. Hebert PD, Penton EH, Burns JM, Janzen DH, Hallwachs W, (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 101: 14812-14817.
4. Hebert PD, Cywinska A, Ball SL, deWaard JR, (2003) Biological identifications through DNA barcodes. Proc Biol Sci 270: 313-321.
5. Sites JW, Marshall JC, (2003) Delimiting species: a Renaissance issue in systematic biology. Trends Ecol Evol 18: 462-470.
6. Tautz D, Arctander P, Minelli A, Thomas RH, Vogler AP, (2003) A plea for DNA taxonomy. Trends Ecol Evol 18: 70-74.
7. Wiens JJ, (2007) Species Delimitation: New Approaches for Discovering Diversity, Syst Biol 56: 875-878.
8. Diday E, Bertrand P, (1986) An extension of hierarchical clustering: the pyramidal representation. In: Gelsema ES, Kanal LN, editors. Pattern Recognition in Practice pp. 411-424.
9. Eigen M, Winkler-Oswatitsch R, Dress A, (1988) Statistical geometry in sequence space: a method of quantitative sequence analysis. Proc Natl Acad Sci USA 85: 5913-5917.
10. Bandelt HJ, Dress AWM, (1992) Split decomposition: a new and useful approach to phylogenetic analysis of distance data. Mol Phylogenet Evol 1: 242-252.
11. Bandelt, HJ, Forster P, Sykes BC, Richards MB, (1995) Mitochondrial portraits of human populations using median networks. Genetics 141: 743-753.
12. Bandelt HJ, Forster P, Rohl A, (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
13. Foulds LR, Hendy MD, Penny D, (1979) A graph theoretic approach to the development of minimal phylogenetic trees. J Mol Evol 13: 127-149.
14. Bandelt HJ, Macaulay V, Richards M, (2000) Median networks: Speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA. Mol Phylogenet Evol 16: 8-28.
15. Excoffier L, Smouse PE, (1994) Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics 136: 343-359.
16. Fitch WM, (1997) Networks and viral evolution. J Mol Evol 44: S65-S75.
17. Strimmer K, Moulton V, (2000) Likelihood analysis of phylogenetic networks using directed graphical models. Mol Biol Evol 17: 875-881.
18. Makarenkov V, Legendre P, (2000) Improving the additive tree representation of a dissimilarity matrix using reticulations. In: Kiers HAL, Rasson JP, Groenen PJF, Schader M, editors. Data Analysis, Classification and Related Methods Springer pp. 35-46.
19. Xu S, (2000) Phylogenetic analysis under reticulate evolution. Mol Biol Evol 17: 897-907.
20. Hart MW, Sunday J, (2007) Things fall apart: biological species form unconnected parsimony networks. Biol Lett 3: 509-512.
21. Chen H, Strand M, Norenburg JL, Sun S, Kajihara H, et al. (2010) Statistical parsimony networks and species assemblages in Cephalotrichid Nemerteans (Nemertea). PLoS ONE 5 (9): e12885 doi:10.1371/journal.pone.0012885.
22. Clement M, Posada D, Crandall KA, (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659.
23. Templeton AR, Crandall KA, Sing CF, (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633.
24. Gentile G, Torre AD, Maegga B, Powell JR, Caccone A, (2002) Genetic differentiation in the African malaria vector, Anopheles gambiae s.s., and the problem of taxonomic status. Genetics 161: 1561-1578.
25. De Barro PJ, Liu SS, Boykin LM, Dinsdale AB, (2011) Bemisia tabaci: A statement of species status. Annu Rev Entomol 56: 1-19.
26. Boykin LM, Shatters RG, Rosell RC, McKenzie CL, Bagnall RA, et al. (2007) Global relationships of Bemisia tabaci (Hemiptera: Aleyrodidae) revealed using Bayesian analysis of mitochondrial CO1 DNA sequence. Mol Phylogenet Evol 44: 1306-1319.
27. Dinsdale A, Cook L, Riginos C, Buckley YM, De Barro P, (2010) Refined global analysis of Bemisia tabaci (Hemiptera: Sternorrhyncha: Aleyrodoidea: Aleyrodidae) mitochondrial cytochrome oxidase 1 to identify species level genetic boundaries. Ann Entomol Soc Am 103: 196-208.
28. Goldstein P Z, DeSalle R, (2011) Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description. BioEssays 33: 135-147.
29. Xu J, De Barro PJ, Liu SS, (2010) Reproductive incompatibility among genetic groups of Bemisia tabaci supports the proposition that the whitefly is a cryptic species complex. Bull Entomol Res 100: 359-366.
30. Crowder DW, Horowitz AR, De Barro PJ, Liu SS, Showalter AM, et al. (2010a) Mating behaviour, life history and adaptation to insecticides determine species exclusion between whiteflies. J Anim Ecol 79: 563-570.
31. Crowder DW, Sitvarin MI, Carriere Y, (2010b) Plasticity inmating behaviour drives asymmetric reproductive interference in whiteflies. Anim Behav 79: 579-587.
32. Elbaz M, Lahav N, Morin S, (2010) Evidence for pre-zygotic reproductive barrier between the B and Q biotypes of Bemisia tabaci. Bull Entomol Res 100: 581-590.
33. Wang P, Ruan YM, Liu SS, (2010) Crossing experiments and behavioral observations reveal reproductive incompatibility among three putative species of the whitefly Bemisia tabaci. Insect Sci 17: 508-516.
34. Wang P, Sun DB, Qui BL, Liu SS, (2011) The presence of six cryptic species of the whitefly Bemisia tabaci complex in China as revealed by crossing experiments. Insect Sci 18: 67-77.
35. Hu J, De Barro P, Zhao H, Wang J, Nardi F, et al. (2011) An extensive field survey combined with a phylogenetic analysis reveals rapid and widespread invasion of two alien whiteflies in China. PLoS ONE 6 (1): e16061 doi:10.1371/journal.pone.0016061.
36. Seal JN, Kellner K, Trindl A, Heinze J, (2011) Phylogeography of the parthenogenic ant Platythyrea punctata: highly successful colonization of the West Indies by a poor disperser. J Biogeogr 38: 868-882.
37. Lejeusne C, Bock DG, Therriault TW, MacIsaac HJ, Cristescu ME, (2011) Comparative phylogeography of two colonial ascidians reveals contrasting invasion histories in North America. Biol Invasions 13: 635-650.
38. Pilgrim EM, Darling JA, (2010) Genetic diversity in two introduced biofouling amphipods (Ampithoe valida & Jassa marmorata) along the Pacific North American coast: investigation into molecular identification and cryptic diversity. Divers Distrib 16: 827-839.
39. Cheek S, MacDonald O, (1994) Extended summaries SCI pesticides group symposium management of Bemisia tabaci. Pest Manag Sci 42: 135-142.
40. Dalton R, (2006) The Christmas Invasion. Nature 443: 898-900.
41. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
42. Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
43. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
44. Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
45. Excoffier L, Laval G, Schneider S, (2005) ARLEQUIN ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform 1: 47-50.
46. Abdo Z, Golding GB, (2007) A step toward barcoding life: a model-based, decision-theoretic method to assign genes to preexisting species groups. Syst Biol 56: 44-56.
47. Avise JC, Walker D, (1999) Species realities and numbers in sexual vertebrates: Perspectives from an asexually transmitted genome. Proc Natl Acad Sci USA 96: 992-995.
48. Hebert P DN, Cywinska A, Ball SL, deWaard J R, (2003) Biological identifications through DNA barcodes. Proc R Soc Lond B Biol Sci 270: 313-321.
49. Pons J, Barraclough T, Gomez-Zurita J, Cardoso A, Duran D, et al. (2006) Sequence-Based Species Delimitation for the DNA Taxonomy of undescribed insects. Syst Biol 55: 595-609.
50. Rosenberg NA, (2007) Statistical tests for taxonomic distinctiveness from observations of monophyly. Evolution 61: 317-23.
51. Cummings MP, Neel MC, Shaw KL, (2008) A genealogical approach to quantifying lineage divergence. Evolution 62: 2411-2422.
52. Rodrigo A, Bertels F, Heled J, Noder R, Shearman H, et al. (2008) The perils of plenty: what are we going to do with all these genes? Phil Trans R Soc Lond B Biol Sci 363: 3893-3902.
53. Ence DD, Carstens BC, (2010) SpedeSTEM: a rapid and accurate method for species delimitation. Mol Ecol Notes 11: 473-480.
54. O'Meara BC, (2010) New heuristic methods for joint species delimitation and species tree inference. Syst Biol 59: 59-73.
55. Yang Z, Rannala B, (2010) Bayesian species delimitation using multilocus sequence data. Proc Natl Acad Sci USA 107: 9264-9269.
56. Monaghan MT, Wild R, Elliot M, Fujisawa T, Balke M, et al. (2009) Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Syst Biol 58: 298-311.
57. Estoup A, Guillemaud T, (2010) Reconstructing routes of invasion using genetic data: why, how and so what. Mol Ecol 19: 4113-4130.
58. Kubatko LS, (2009) Identifying hybridization events in the presence of coalescence via model selection. Syst Biol 58: 478-488.
59. Kubatko LS, Carstens BC, Knowles LL, (2009) STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 25: 971-973.
60. Liu L, (2008) BEST: Bayesian estimation of species trees under the coalescent model. Bioinformatics 24: 2542-2543.
61. Heled J, Drummond AJ, (2010) Bayesian inference of species trees from multilocus data. Mol Biol Evol 27: 570-580.
62. Kelly D, Muirhead J, Heath D, Macisaac H, (2006) Contrasting patterns in genetic diversity following multiple invasions of fresh and brackish waters. Mol Ecol 15: 3641-3653.
63. Xavier R, Santos AM, Lima FP, Branco M, (2009) Invasion or invisibility: using genetic and distributional data to investigate the alien or indigenous status of the Atlantic populations of the peracarid isopod, Stenosoma nadejda (Rezig 1989). Mol Ecol 18: 3283-3290.
64. Goldstien SJ, Dupont L, Viard F, Hallas PJ, Nishikawa T, et al. (2011) Global Phylogeography of the widely introduced North West Pacific ascidian Styela clava. PLoS One 6 (2): e16755.
65. Lee P, Patel R, Conlan R, Wainwright S, Hipkin C, (2004) Comparison of genetic diversities in native and alien populations of Hoary Mustard (Hirschfeldia incana [L.] Iagreze-Fossat). Intl J Plant Sci 165: 833-843.
66. Wares JP, Hughes AR, Grosberg RK, (2005) Mechanisms that drive evolutionary change: insights from species introductions and invasions. In: Sax DF, Stachowicz JJ, Gaines SD, editors. Species invasions: Insights into ecology, evolution, and biogeography Sinauer Associates Massachusetts pp. 229-257.
67. Ellestrand NC, Schierenbeck KA, (2000) Hybridization as a stimulus for the evolution of invasiveness in plants? Proc Natl Acad Sci USA 97: 7043-7050.
68. Ahmed MZ, Shatters RG, Ren SX, Jin GH, Mandour NS, et al. (2009) Genetic distinctions among the Mediterranean and Chinese populations of Bemisia tabaci Q biotype and their endosymbiont Wolbachia populations. J Appl Entomol 133: 733-741.
69. Tsutsui ND, Suarez AV, Holway DA, Case TJ, (2000) Reduced genetic variation and the success of an invasive species. Proc Nat Acad Sci USA 97: 5948-5953.
70. Sakai AK, Allendorf FW, Holt JS, Lodge DM, Molofsky J, et al. (2001) The population biology of invasive species. Annu Rev Ecol Syst 32: 305-332.
71. Novak SJ, Mack RN, (2005) Genetic bottlenecks in alien plant species: influence of mating systems and introduction dynamics. In: Sax DF, Stachowicz JJ, Gaines SD, editors. Species invasions: Insights into ecology, evolution, and biogeography Sinauer Associates Massachusetts pp. 201-228.