RNA-Binding Protein Khd1 and Ccr4 Deadenylase Play Overlapping Roles in the Cell Wall Integrity Pathway in Saccharomyces cerevisiae ∇

Eukaryotic Cell

Volumn 10, Issue 10, 2011, Pages 1340-1347

  Ito, Wataru ^a   Li, Xia ^a   Irie, Kaoru ^a   Mizuno, Tomoaki ^a   Irie, Kenji ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CCR4 PROTEIN, S CEREVISIAE; GUANINE NUCLEOTIDE EXCHANGE FACTOR; GUANOSINE TRIPHOSPHATASE ACTIVATING PROTEIN; HEK2 PROTEIN, S CEREVISIAE; RHO GTPASE ACTIVATING PROTEIN; RHO GTPASE-ACTIVATING PROTEIN; RHO GUANINE NUCLEOTIDE EXCHANGE FACTORS; RIBONUCLEASE; RIBONUCLEOPROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

ARTICLE; CELL WALL; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION;

CELL WALL; GENE EXPRESSION REGULATION, FUNGAL; GTPASE-ACTIVATING PROTEINS; GUANINE NUCLEOTIDE EXCHANGE FACTORS; RIBONUCLEASES; RIBONUCLEOPROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SIGNAL TRANSDUCTION;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 80053435490     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.05181-11     Document Type: Article

References (47)

1. Azzouz, N., et al. 2009. Specific roles for the Ccr4-Not complex subunits in expression of the genome. RNA 15:377-383.
2. Baudin, A., K. O. Ozier, A. Denouel, F. Lacroute, and C. Cullin. 1993. A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucleic Acids Res. 21:3329-3330.
3. Biswas, D., Y. Yu, D. Mitra, and D. J. Stillman. 2006. Genetic interactions between Nhp6 and Gcn5 with Mot1 and the Ccr4-Not complex that regulate binding of TATA-binding protein in Saccharomyces cerevisiae. Genetics 172:837-849.
4. Bobola, N., R. P. Jansen, T. H. Shin, and K. Nasmyth. 1996. Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells. Cell 84:699-709.
5. Bomsztyk, K., O. Denisenko, and J. Ostrowski. 2004. hnRNP K: one protein multiple processes. Bioessays 26:629-638.
6. Collart, M. A. 2003. Global control of gene expression in yeast by the Ccr4-Not complex. Gene 313:1-16.
7. Collart, M. A., and K. Struhl. 1994. NOT1(CDC39), NOT2(CDC36), NOT3, and NOT4 encode a global-negative regulator of transcription that differentially affects TATA-element utilization. Genes Dev. 8:525-537.
8. Coller, J., and R. Parker. 2004. Eukaryotic mRNA decapping. Annu. Rev. Biochem. 73:861-890.
9. Cui, Y., et al. 2008. Genome wide expression analysis of the CCR4-NOT complex indicates that it consists of three modules with the NOT module controlling SAGA-responsive genes. Mol. Genet. Genomics 279:323-337.
10. Denisenko, O., and K. Bomsztyk. 2002. Yeast hnRNP K-like genes are involved in regulation of the teromeric position effect and telomere length. Mol. Cell. Biol. 22:286-297.
11. Denisenko, O., and K. Bomsztyk. 2008. Epistatic interaction between the K-homology domain protein HEK2 and SIR1 at HMR and telomeres in yeast. J. Mol. Biol. 375:1178-1187.
12. Gerber, A. P., D. Herschlag, and P. O. Brown. 2004. Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol. 2:342-354.
13. Gietz, R. D., and A. Sugino. 1988. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527-534.
14. Glisovic, T., J. L. Bachorik, J. Yong, and G. Dreyfuss. 2008. RNA-binding proteins and post-transcriptional gene regulation. FEBS Lett. 14:1977-1986.
15. Goldstrohm, A. C., B. A. Hook, D. J. Seay, and M. Wickens. 2006. PUF proteins bind Pop2p to regulate messenger RNAs. Nat. Struct. Mol. Biol. 13:533-539.
16. Halbeisen, R. E., A. Galgano, T. Scherrer, and A. P. Gerber. 2008. Posttranscriptional gene regulation: From genome-wide studies to principles. Cell. Mol. Life Sci. 65:798-813.
17. Hasegawa, Y., K. Irie, and A. P. Gerber. 2008. Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast. RNA 14:2333-2346.
18. Hata, H., et al. 1998. Dhh1p, a putative RNA helicase, associates with the general transcription factors Pop2p and Ccr4p from Saccharomyces cerevisiae. Genetics 148:571-579.
19. Hogan, D. J., D. P. Riordan, A. P. Gerber, D. Herschlag, and P. O. Brown. 2008. Diverse RNA-Binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 6:2297-2313.
20. Hook, B. A., A. C. Goldstrohm, D. J. Seay, and M. Wickens. 2007. Two yeast PUF proteins negatively regulate a single mRNA. J. Biol. Chem. 282:15430-15438.
21. Irie, K., et al. 2002. The Khd1 protein, which has three KH RNA-binding motifs, is required for proper localization of ASH1 mRNA in yeast. EMBO J. 21:1158-1167.
22. Kaiser, C. A., A. Adams, and D. E. Gottschling. 1994. Methods in yeast genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
23. Keene, J. D. 2007. RNA regulons: coordination of post-transcriptional events. Nat. Rev. Genet. 8:533-543.
24. Klis, F. M. 1994. Review: cell wall assembly in yeast. Yeast 10:851-869.
25. Krause, S. A., and J. V. Gray. 2002. The protein kinase C pathway is required for viability in quiescence in Saccharomyces cerevisiae. Curr. Biol. 12:588-593.
26. Levin, D. E. 2005. Cell wall integrity signaling in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 69:262-291.
27. Longtine, M. S., et al. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961.
28. Makeyev, A. V., and S. A. Liebhaber. 2002. The Poly(C)-binding proteins: a multiplicity of functions and a search for mechanisms. RNA 8:265-278.
29. Manning, B. D., R. Padmanabha, and M. Snyder. 1997. The Rho-GEF Rom2p localizes to sites of polarized cell growth and participates in cytoskeletal functions in Saccharomyces cerevisiae. Mol. Biol. Cell 8:1829-1844.
30. Manukyan, A., et al. 2008. Ccr4 alters cell size in yeast by modulating the timing of CLN1 and CLN2 expression. Genetics 179:345-357.
31. Mauchi, N., Y. Ohtake, and K. Irie. 2010. Stability control of MTL1 mRNA by the RNA-binding protein Khd1p in yeast. Cell Struct. Funct. 35:95-105.
32. Nonaka, H., et al. 1995. A downstream target of RHO1 small GTP-binding protein is PKC1, a homolog of protein kinase C, which leads to activation of the MAP kinase cascade in Saccharomyces cerevisiae. EMBO J. 14:5931-5938.
33. Ozaki, K., et al. 1996. Rom1p and Rom2p are GDP/GTP exchange proteins (GEPs) for the Rho1p small GTP binding protein in Saccharomyces cerevisiae. EMBO J. 15:2196-2207.
34. Pan, X., et al. 2006. A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 124:1069-1081.
35. Paquin, N., et al. 2007. Local activation of yeast ASH1 mRNA translation through phosphorylation of Khd1p by the casein kinase Yck1p. Mol. Cell 26:795-809.
36. Sakumoto, N., et al. 1999. A series of protein phosphatase gene disruptants in Saccharomyces cerevisiae. Yeast 15:1669-1679.
37. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
38. Schneider, B. L., B. Steiner, W. Seufert, and A. B. Futcher. 1996. pMPYZAP: a reusable polymerase chain reaction-directed gene disruption cassette for Saccharomyces cerevisiae. Yeast 12:129-134.
39. Sekiya-Kawasaki, M., et al. 2002. Dissection of upstream regulatory components of the Rho1p effector, 1,3-beta-glucan synthase, in Saccharomyces cerevisiae. Genetics 162:663-676.
40. Sil, A., and I. Herskowitz. 1996. Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene. Cell 84:711-722.
41. Siomi, H., and G. Dreyfuss. 1997. RNA-binding proteins as regulators of gene expression. Curr. Opin. Genet. Dev. 3:345-353.
42. Stewart, M. S., S. A. Krause, J. McGhie, and J. V. Gray. 2007. Mpt5p, a stress tolerance- and lifespan-promoting PUF protein in Saccharomyces cerevisiae, acts upstream of the cell wall integrity pathway. Eukaryot. Cell 6:262-270.
43. Tadauchi, T., K. Matsumoto, I. Herskowitz, and K. Irie. 2001. Post-transcriptional regulation through the HO 3-UTR by Mpt5, a yeast homolog of Pumilio and FBF. EMBO J. 20:552-561.
44. Traven, A., et al. 2009. The Ccr4-Pop2-NOT mRNA deadenylase contributes to septin organization in Saccharomyces cerevisiae. Genetics 182:955-966.
45. Watanabe, D., M. Abe, and Y. Ohya. 2001. Yeast Lrg1p acts as a specialized RhoGAP regulating 1,3-beta-glucan synthesis. Yeast 18:943-951.
46. Wolf, J. J., et al. 2010. Feed-forward regulation of a cell fate determinant by an RNA-binding protein generates asymmetry in yeast. Genetics 185:513-522.
47. Woolstencroft, R. N., et al. 2006. Ccr4 contributes to tolerance of replication stress through control of CRT1 mRNA poly(A) tail length. J. Cell Sci. 119:5178-5192.