메뉴 건너뛰기




Volumn 3, Issue 1, 2010, Pages 26-36

Complete genome sequence of Meiothermus ruber type strain (21 T)

(34)  Tindall, Brian J a   Sikorski, Johannes a   Lucas, Susan b   Goltsman, Eugene b   Copeland, Alex b   del Rio, Tijana Glavina b   Nolan, Matt b   Tice, Hope b   Cheng, Jan Fang b   Han, Cliff b,c   Pitluck, Sam b   Liolios, Konstantinos b   Ivanova, Natalia b   Mavromatis, Konstantinos b   Ovchinnikova, Galina b   Pati, Amrita b   Fähnrich, Regine a   Goodwin, Lynne b,c   Chen, Amy d   Palaniappan, Krishna d   more..


Author keywords

Aerobic; Deino cocci; Free living; GEBA; Gram negative; Non motile; Thermales; Thermophilic

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); MEIOTHERMUS; MEIOTHERMUS RUBER; NEGIBACTERIA; THERMALES; THERMUS;

EID: 80053364713     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.1032748     Document Type: Article
Times cited : (32)

References (48)
  • 1
    • 0029863893 scopus 로고    scopus 로고
    • Transfer of Thermus ruber (Loginova et al. 1984), Thermus silvanus (Tenreiro et al. 1995), and Thermus chlia-rophilus (Tenreiro et al. 1995) to Meiothermus gen. nov. as Meiothermus ruber comb. nov., Mei-othermus silvanus comb. nov., and Meiothermus chliarophilus comb. nov., respectively, and emendation of the genus Thermus
    • doi:10.1099/00207713-46-2-604
    • Nobre MF, Trüper HG, Da Costa MS. Transfer of Thermus ruber (Loginova et al. 1984), Thermus silvanus (Tenreiro et al. 1995), and Thermus chlia-rophilus (Tenreiro et al. 1995) to Meiothermus gen. nov. as Meiothermus ruber comb. nov., Mei-othermus silvanus comb. nov., and Meiothermus chliarophilus comb. nov., respectively, and emendation of the genus Thermus. Int J Syst Bac-teriol 1996; 46:604-606. doi:10.1099/00207713-46-2-604.
    • (1996) Int J Syst Bac-teriol , vol.46 , pp. 604-606
    • Nobre, M.F.1    Trüper, H.G.2    da Costa, M.S.3
  • 2
    • 0016525360 scopus 로고
    • Obligate thermophilic-bacterium Thermus ruber in hot springs of Kam-chatka
    • Loginova LG, Egorova LA. Obligate thermophilic-bacterium Thermus ruber in hot springs of Kam-chatka. Mikrobiologiya 1975; 44:661-665.
    • (1975) Mikrobiologiya , vol.44 , pp. 661-665
    • Loginova, L.G.1    Egorova, L.A.2
  • 3
    • 0018839477 scopus 로고
    • Ap-proved Lists of Bacterial Names
    • doi:10.1099/00207713-30-1-225
    • Skerman VBD, McGowan V, Sneath PHA. Ap-proved Lists of Bacterial Names. Int J Syst Bacte-riol 1980; 30:225-420. doi:10.1099/00207713-30-1-225.
    • (1980) Int J Syst Bacte-riol , vol.30 , pp. 225-420
    • Skerman, V.B.D.1    McGowan, V.2    Sneath, P.H.A.3
  • 6
    • 0040460179 scopus 로고    scopus 로고
    • List of bacterial names with standing in nomenclature: A folder available on the Internet
    • PubMed doi:10.1099/00207713-47-2-5907
    • Euzéby JP. List of bacterial names with standing in nomenclature: A folder available on the Internet. Int J Syst Bacteriol 1997; 47:590-592. PubMed doi:10.1099/00207713-47-2-5907.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 590-592
    • Euzéby, J.P.1
  • 7
    • 67650407657 scopus 로고    scopus 로고
    • Meiother-mus rufus sp. nov., a new slightly thermophilic red-pigmented species and emended description of the genus Meiothermus
    • PubMed doi:10.1016/j.syapm.2009.05.002
    • Albuquerque L, Ferreira C, Tomaz D, Tiago I, Veríssimo A, da Costa MS, Nobre MF. Meiother-mus rufus sp. nov., a new slightly thermophilic red-pigmented species and emended description of the genus Meiothermus. Syst Appl Microbiol 2009; 32:306-313. PubMed doi:10.1016/j.syapm.2009.05.002.
    • (2009) Syst Appl Microbiol , vol.32 , pp. 306-313
    • Albuquerque, L.1    Ferreira, C.2    Tomaz, D.3    Tiago, I.4    Veríssimo, A.5    da Costa, M.S.6    Nobre, M.F.7
  • 8
    • 0028882122 scopus 로고
    • Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., two new species related to Thermus ruber but with lower growth temperatures
    • PubMed doi:10.1099/00207713-45-4-633
    • Tenreiro S, Nobre MF, da Costa MS. Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., two new species related to Thermus ruber but with lower growth temperatures. Int J Syst Bacteriol 1995; 45:633-639. PubMed doi:10.1099/00207713-45-4-633.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 633-639
    • Tenreiro, S.1    Nobre, M.F.2    da Costa, M.S.3
  • 10
    • 77950602454 scopus 로고    scopus 로고
    • Meiothermus cateniformans sp. nov., a slightly thermophilic species from north-eastern China
    • PubMed doi:10.1099/ijs.0.007914-0
    • Zhang XQ, Zhang WJ, Wei BP, Xu XW, Zhu XF, Wu M. Meiothermus cateniformans sp. nov., a slightly thermophilic species from north-eastern China. Int J Syst Evol Microbiol 2010; 60:840-844. PubMed doi:10.1099/ijs.0.007914-0.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 840-844
    • Zhang, X.Q.1    Zhang, W.J.2    Wei, B.P.3    Xu, X.W.4    Zhu, X.F.5    Wu, M.6
  • 11
    • 0036740530 scopus 로고    scopus 로고
    • Meiothermus taiwanensis sp. nov., a novel filamentous, ther-mophilic species isolated in Taiwan
    • PubMed doi:10.1099/ijs.0.02189-0
    • Chen MY, Lin GH, Lin YT, Tsay SS. Meiothermus taiwanensis sp. nov., a novel filamentous, ther-mophilic species isolated in Taiwan. Int J Syst Evol Microbiol 2002; 52:1647-1654. PubMed doi:10.1099/ijs.0.02189-0.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1647-1654
    • Chen, M.Y.1    Lin, G.H.2    Lin, Y.T.3    Tsay, S.S.4
  • 12
    • 0030870935 scopus 로고    scopus 로고
    • Meiothermus cerbereus sp. nov., a new slightly thermophilic species with high levels of 3-hydroxy fatty acids
    • PubMed doi:10.1099/00207713-47-4-1225
    • Chung AP, Rainey F, Nobre MF, Burghardt J, Cos-ta MSD. Meiothermus cerbereus sp. nov., a new slightly thermophilic species with high levels of 3-hydroxy fatty acids. Int J Syst Bacteriol 1997; 47:1225-1230. PubMed doi:10.1099/00207713-47-4-1225.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 1225-1230
    • Chung, A.P.1    Rainey, F.2    Nobre, M.F.3    Burghardt, J.4    Cos-Ta, M.S.D.5
  • 13
    • 0029863893 scopus 로고    scopus 로고
    • Transfer of Thermus ruber (Loginova et al. 1984), Thermus silvanus (Tenreiro et al. 1995), and Thermus chlia-rophilus (Tenreiro et al. 1995) to Meiothermus gen. nov. as Meiothermus ruber comb. nov., Mei-othermus silvanus comb. nov., and Meiothermus chliarophilus comb. nov., respectively, and emendation of the genus Thermus
    • doi:10.1099/00207713-46-2-604
    • Nobre MF, Trüper HG. Da Costa. Transfer of Thermus ruber (Loginova et al. 1984), Thermus silvanus (Tenreiro et al. 1995), and Thermus chlia-rophilus (Tenreiro et al. 1995) to Meiothermus gen. nov. as Meiothermus ruber comb. nov., Mei-othermus silvanus comb. nov., and Meiothermus chliarophilus comb. nov., respectively, and emendation of the genus Thermus. Int J Syst Bac-teriol 1996; 46:604-606. doi:10.1099/00207713-46-2-604.
    • (1996) Int J Syst Bac-teriol , vol.46 , pp. 604-606
    • Nobre, M.F.1    Trüper, H.G.2    da Costa3
  • 14
    • 0036740530 scopus 로고    scopus 로고
    • Meiothermus taiwanensis sp. nov., a novel filamentous, ther-mophilic species isolated in Taiwan
    • PubMed doi:10.1099/ijs.0.02189-0
    • Chen MY, Lin GH, Lin YT, Tsay SS. Meiothermus taiwanensis sp. nov., a novel filamentous, ther-mophilic species isolated in Taiwan. Int J Syst Evol Microbiol 2002; 52:1647-1654. PubMed doi:10.1099/ijs.0.02189-0.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1647-1654
    • Chen, M.Y.1    Lin, G.H.2    Lin, Y.T.3    Tsay, S.S.4
  • 15
    • 35648991375 scopus 로고    scopus 로고
    • EzTaxon: A web-based tool for the iden-tification of prokaryotes based on 16S ribosomal RNA gene sequences
    • PubMed doi:10.1099/ijs.0.64915-0
    • Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW. EzTaxon: a web-based tool for the iden-tification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 2007; 57: 2259-2261. PubMed doi:10.1099/ijs.0.64915-0.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2259-2261
    • Chun, J.1    Lee, J.H.2    Jung, Y.3    Kim, M.4    Kim, S.5    Kim, B.K.6    Lim, Y.W.7
  • 16
    • 0037027551 scopus 로고    scopus 로고
    • Meio-thermus rosaceus sp. nov. isolated from Teng-chong hot spring in Yunnan, China
    • PubMed doi:10.1111/j.1574-6968.2002.tb11445.x
    • Chen C, Lin L, Peng Q, Ben K, Zhou Z. Meio-thermus rosaceus sp. nov. isolated from Teng-chong hot spring in Yunnan, China. FEMS Micro-biol Lett 2002; 216:263-268. PubMed doi:10.1111/j.1574-6968.2002.tb11445.x.
    • (2002) FEMS Micro-biol Lett , vol.216 , pp. 263-268
    • Chen, C.1    Lin, L.2    Peng, Q.3    Ben, K.4    Zhou, Z.5
  • 18
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the do-mains Archaea, Bacteria, and Eucarya
    • PubMed doi:10.1073/pnas.87.12.4576
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the do-mains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed doi:10.1073/pnas.87.12.4576.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 19
    • 84860343171 scopus 로고    scopus 로고
    • Taxonomic outline of the Bacteria and Archaea, Release 7.7 March 6, Part 2 - The Bacteria: Phyla Aquificae, Thermotogae, Thermodesulfobacteria, Deino-coccus-Thermus, Chrysiogenetes, Chloroflexi, Thermomicrobia, Nitrospira, Deferribacteres, Cyanobacteria, and Chlorobi
    • Garrity GM, Lilburn TG, Cole JR, Harrison SH, Euzéby J, Tindall BJ. Taxonomic outline of the Bacteria and Archaea, Release 7.7 March 6, 2007. Part 2 - The Bacteria: Phyla Aquificae, Thermotogae, Thermodesulfobacteria, Deino-coccus-Thermus, Chrysiogenetes, Chloroflexi, Thermomicrobia, Nitrospira, Deferribacteres, Cyanobacteria, and Chlorobi. http://www.taxonomicoutline.org
    • (2007)
    • Garrity, G.M.1    Lilburn, T.G.2    Cole, J.R.3    Harrison, S.H.4    Euzéby, J.5    Tindall, B.J.6
  • 20
    • 0024958864 scopus 로고
    • The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construc-tion
    • PubMed
    • Weisburg WG, Giovannoni SJ, Woese CR. The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construc-tion. Syst Appl Microbiol 1989; 11:128-134. PubMed.
    • (1989) Syst Appl Microbiol , vol.11 , pp. 128-134
    • Weisburg, W.G.1    Giovannoni, S.J.2    Woese, C.R.3
  • 21
    • 0019362778 scopus 로고
    • Nomenclature for Mi-crococcus radiodurans and other radiation resis-tant cocci: Deinococcaceae fam. nov. and Dei-nococcus gen. nov., including five species
    • doi:10.1099/00207713-31-3-353
    • Brooks BW, Murray RGE. Nomenclature for Mi-crococcus radiodurans and other radiation resis-tant cocci: Deinococcaceae fam. nov. and Dei-nococcus gen. nov., including five species. Int J Syst Bacteriol 1981; 31:353-360. doi:10.1099/00207713-31-3-353.
    • (1981) Int J Syst Bacteriol , vol.31 , pp. 353-360
    • Brooks, B.W.1    Murray, R.G.E.2
  • 22
    • 0030950157 scopus 로고    scopus 로고
    • Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison
    • PubMed doi:10.1099/00207713-47-2-510
    • Rainey FA, Nobre MF, Schumman P, Stacke-brandt E, da Costa MS. Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. Int J Syst Bacteriol 1997; 47:510-514. PubMed doi:10.1099/00207713-47-2-510.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 510-514
    • Rainey, F.A.1    Nobre, M.F.2    Schumman, P.3    Stacke-Brandt, E.4    da Costa, M.S.5
  • 23
    • 0014501198 scopus 로고
    • Thermus aquaticus gen. n. and sp. n., a nonsporulating extreme thermophile
    • PubMed
    • Brock TD, Freeze H. Thermus aquaticus gen. n. and sp. n., a nonsporulating extreme thermophile. J Bacteriol 1969; 98:289-297. PubMed.
    • (1969) J Bacteriol , vol.98 , pp. 289-297
    • Brock, T.D.1    Freeze, H.2
  • 24
    • 0009378811 scopus 로고    scopus 로고
    • Class I. Deinococci class. nov
    • In: Garrity GM, Boone DR, Castenholz RW, Springer, New York
    • Garrity GM, Holt JG. Class I. Deinococci class. nov. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriolo-gy, Second Edition, Volume 1, Springer, New York, 2001, p. 395.
    • (2001) Bergey's Manual of Systematic Bacteriolo-gy, Second Edition , vol.1 , pp. 395
    • Garrity, G.M.1    Holt, J.G.2
  • 25
    • 0036560850 scopus 로고    scopus 로고
    • Validation List no. 85. Validation of publication of new names and new combinations previously effectively published outside the IJ-SEM
    • List Editor, PubMed doi:10.1099/ijs.0.02358-0
    • List Editor. Validation List no. 85. Validation of publication of new names and new combinations previously effectively published outside the IJ-SEM. Int J Syst Evol Microbiol 2002; 52:685-690. PubMed doi:10.1099/ijs.0.02358-0.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 685-690
  • 27
  • 30
    • 0033053881 scopus 로고    scopus 로고
    • Carotenoid glycoside esters from the thermophilic bacterium Meiothermus ruber
    • PubMed doi:10.1021/np980573d
    • Burgess ML, Barrow KD, Gao C, Heard GM, Glenn D. Carotenoid glycoside esters from the thermophilic bacterium Meiothermus ruber. J Nat Prod 1999; 62:859-863. PubMed doi:10.1021/np980573d.
    • (1999) J Nat Prod , vol.62 , pp. 859-863
    • Burgess, M.L.1    Barrow, K.D.2    Gao, C.3    Heard, G.M.4    Glenn, D.5
  • 31
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • PubMed
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17:540-552. PubMed.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 32
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • PubMed doi:10.1093/bioinformatics/18.3.452
    • Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinformat-ics 2002; 18:452-464. PubMed doi:10.1093/bioinformatics/18.3.452.
    • (2002) Bioinformat-ics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.F.3
  • 33
    • 50249100595 scopus 로고    scopus 로고
    • A Rapid Bootstrap Algorithm for the RAxML Web Servers
    • PubMed doi:10.1080/10635150802429642
    • Stamatakis A, Hoover P, Rougemont J. A Rapid Bootstrap Algorithm for the RAxML Web Servers. Syst Biol 2008; 57:758-771. PubMed doi:10.1080/10635150802429642.
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 36
    • 75549086416 scopus 로고    scopus 로고
    • The Genomes On Line Database (GOLD) in 2009: Status of genomic and metagenomic projects and their associated metadata
    • PubMed doi:10.1093/nar/gkp848
    • Liolios K, Chen IM, Mavromatis K, Tavernarakis N, Hugenholtz P, Markowitz VM, Kyrpides NC. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2010; 38:D346-D354. PubMed doi:10.1093/nar/gkp848.
    • (2010) Nucleic Acids Res , vol.38
    • Liolios, K.1    Chen, I.M.2    Mavromatis, K.3    Tavernarakis, N.4    Hugenholtz, P.5    Markowitz, V.M.6    Kyrpides, N.C.7
  • 37
    • 0025866041 scopus 로고
    • Polar lipid and fatty acid composition of strains of Thermus ruber
    • Donato ME, Seleiro EA, da Costa MS. Polar lipid and fatty acid composition of strains of Thermus ruber. Syst Appl Microbiol 1991; 14:234-239.
    • (1991) Syst Appl Microbiol , vol.14 , pp. 234-239
    • Donato, M.E.1    Seleiro, E.A.2    da Costa, M.S.3
  • 38
    • 33747129752 scopus 로고    scopus 로고
    • Structural elucidation of phosphogly-colipids from strains of the bacterial thermophiles Thermus and Meiothermus
    • PubMed doi:10.1194/jlr.M600034-JLR200
    • Yang YL, Yang FL, Jao SC, Chen MY, Tsay SS, Zou W, Wu SH. Structural elucidation of phosphogly-colipids from strains of the bacterial thermophiles Thermus and Meiothermus. J Lipid Res 2006; 47:1823-1832. PubMed doi:10.1194/jlr.M600034-JLR200.
    • (2006) J Lipid Res , vol.47 , pp. 1823-1832
    • Yang, Y.L.1    Yang, F.L.2    Jao, S.C.3    Chen, M.Y.4    Tsay, S.S.5    Zou, W.6    Wu, S.H.7
  • 39
    • 0022387779 scopus 로고
    • Structure of a novel phos-phoglycolipid from Deinococcus radiodurans
    • PubMed
    • Anderson R, Hansen K. Structure of a novel phos-phoglycolipid from Deinococcus radiodurans. J Biol Chem 1985; 260:12219-12223. PubMed.
    • (1985) J Biol Chem , vol.260 , pp. 12219-12223
    • Anderson, R.1    Hansen, K.2
  • 40
    • 0032898034 scopus 로고    scopus 로고
    • Characterization of glycolipids from Meiothermus spp
    • PubMed doi:10.1099/13500872-145-5-1191
    • Ferreira AM, Wait R, Nobre MF, da Costa MS. Characterization of glycolipids from Meiothermus spp. Microbiology 1999; 145:1191-1199. PubMed doi:10.1099/13500872-145-5-1191.
    • (1999) Microbiology , vol.145 , pp. 1191-1199
    • Ferreira, A.M.1    Wait, R.2    Nobre, M.F.3    da Costa, M.S.4
  • 41
    • 52249100797 scopus 로고    scopus 로고
    • An alternative menaqui-none biosynthetic pathway operating in microor-ganisms
    • PubMed doi:10.1126/science.1160446
    • Hiratsuka T, Furihata K, Ishikawa J, Yamashita H, Itoh N, Seto H, Dairi T. An alternative menaqui-none biosynthetic pathway operating in microor-ganisms. Science 2008; 321:1670-1673. PubMed doi:10.1126/science.1160446.
    • (2008) Science , vol.321 , pp. 1670-1673
    • Hiratsuka, T.1    Furihata, K.2    Ishikawa, J.3    Yamashita, H.4    Itoh, N.5    Seto, H.6    Dairi, T.7
  • 42
    • 77952889628 scopus 로고    scopus 로고
    • En route to a genome-based classification of Archaea and Bacteria?
    • PubMed doi:10.1016/j.syapm.2010.03.003
    • Klenk HP, Göker M. En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol 2010; 33:175-182. PubMed doi:10.1016/j.syapm.2010.03.003.
    • (2010) Syst Appl Microbiol , vol.33 , pp. 175-182
    • Klenk, H.P.1    Göker, M.2
  • 44
    • 84860325433 scopus 로고    scopus 로고
    • List of growth media used at DSMZ
    • List of growth media used at DSMZ: http://www.dsmz.de/microorganisms/media_list.php.
  • 48
    • 69949116874 scopus 로고    scopus 로고
    • IMG ER: A system for microbial ge-nome annotation expert review and curation
    • PubMed doi:10.1093/bioinformatics/btp393
    • Markowitz VM, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. IMG ER: a system for microbial ge-nome annotation expert review and curation. Bio-informatics 2009; 25:2271-2278. PubMed doi:10.1093/bioinformatics/btp393.
    • (2009) Bio-informatics , vol.25 , pp. 2271-2278
    • Markowitz, V.M.1    Ivanova, N.N.2    Chen, I.M.A.3    Chu, K.4    Kyrpides, N.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.