A reference map of the membrane proteome of Enterococcus faecalis

Proteomics

Volumn 11, Issue 19, 2011, Pages 3935-3941

  Maddalo, Gianluca ^a   Chovanec, Peter ^b   Stenberg Bruzell, Filippa ^a   Nielsen, Hailyn V ^c   Jensen Seaman, Michael I ^b   Ilag, Leopold L ^a   Kline, Kimberly A ^c   Daley, Daniel O ^a  

^a STOCKHOLM UNIVERSITY   (Sweden)

^b DUQUESNE UNIVERSITY   (United States)

^c WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Blue native PAGE; Enterococcus faecalis; Membrane proteome; Microbiology; Nano LC ESI MS MS; Protein complex

Indexed keywords

MEMBRANE PROTEIN;

ARTICLE; BACTERIAL VIRULENCE; ENTEROCOCCUS FAECALIS; HOMEOSTASIS; MASS SPECTROMETRY; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN INTERACTION;

BACTERIAL PROTEINS; CELL MEMBRANE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENTEROCOCCUS FAECALIS; PROTEOME; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

ANIMALIA; BACTERIA (MICROORGANISMS); ENTEROCOCCUS FAECALIS; POSIBACTERIA;

EID: 80053039270     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201100103     Document Type: Article

References (25)

1. Fisher, K., Phillips, C., The ecology, epidemiology and virulence of Enterococcus. Microbiology 2009, 155, 1749-1757.
2. st century. Cell. Mol. Life Sci. 2003, 60, 2622-2636.
3. Hidron, A. I., Edwards, J. R., Patel, J., Horan, T. C. et al., NHSN annual update: antimicrobial-resistant pathogens associated with healthcare-associated infections: annual summary of data reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention 2006-2007. Infect. Control Hosp. Epidemiol. 2008, 29, 996-1011.
4. Paulsen, I. T., Banerjei, L., Myers, G. S., Nelson, K. E. et al., Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 2003, 299, 2071-2074.
5. Bourgogne, A., Garsin, D. A., Qin, X., Singh, K. V. et al., Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF. Genome Biol. 2008, 9, R110.
6. Scott, J. R., Barnett, T. C., Surface proteins of gram-positive bacteria and how they get there. Annu. Rev. Microbiol. 2006, 60, 397-423.
7. Hurdle, J. G., O'Neill, A. J., Chopra, I., Lee, R. E., Targeting bacterial membrane function: an underexploited mechanism for treating persistent infections. Nat. Rev. Microbiol. 2011, 9, 62-75.
8. Benachour, A., Morin, T., Hebert, L., Budin-Verneuil, A. et al., Identification of secreted and surface proteins from Enterococcus faecalis. Can. J. Microbiol. 2009, 55, 967-974.
9. Bohle, L. A., Riaz, T., Egge-Jacobsen, W., Skaugen, M. et al., Identification of surface proteins in Enterococcus faecalis V583. Biomed. Chromatogr. Genomics 2011, 12, 135.
10. Ike, Y., Craig, R. A., White, B. A., Yagi, Y., Clewell, D. B., Modification of Streptococcus faecalis sex pheromones after acquisition of plasmid DNA. Proc. Natl. Acad. Sci. USA 1983, 80, 5369-5373.
11. Maddalo, G., Stenberg Bruzell, F., Gotzke, H., Toddo, S. et al., Systematic analysis of native membrane protein complexes in Escherichia coli. J. Proteome Res. 2011, 10, 1848-1859.
12. Bendtsen, J. D., Nielsen, H., von Heijne, G., Brunak, S., Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 2004, 340, 783-795.
13. Bernsel, A., Viklund, H., Falk, J., Lindahl, E. et al., Prediction of membrane-protein topology from first principles. Proc. Natl. Acad. Sci. USA 2008, 105, 7177-7181.
14. Bagos, P. G., Tsirigos, K. D., Liakopoulos, T. D., Hamodrakas, S. J., Prediction of lipoprotein signal peptides in gram-positive bacteria with a Hidden Markov Model. J. Proteome Res. 2008, 7, 5082-5093.
15. Bohle, L. A., Faergestad, E. M., Veiseth-Kent, E., Steinmoen, H. et al., Identification of proteins related to the stress response in Enterococcus faecalis V583 caused by bovine bile. Proteome Sci. 2010, 8, 37.
16. Giard, J. C., Laplace, J. M., Rince, A., Pichereau, V. et al., The stress proteome of Enterococcus faecalis. Electrophoresis 2001, 22, 2947-2954.
17. Heim, S., Lleo, M. M., Bonato, B., Guzman, C. A., Canepari, P., The viable but nonculturable state and starvation are different stress responses of Enterococcus faecalis, as determined by proteome analysis. J. Bacteriol. 2002, 184, 6739-6745.
18. Wang, X., He, X., Jiang, Z., Wang, J. et al., Proteomic analysis of the Enterococcus faecalis V583 strain and clinical isolate V309 under vancomycin treatment. J. Proteome Res. 2010, 9, 1772-1785.
19. Bernsel, A., Daley, D. O., Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why? Trends Microbiol. 2009, 17, 444-449.
20. Eichacker, L. A., Granvogl, B., Mirus, O., Muller, B. C. et al., Hiding behind hydrophobicity. Transmembrane segments in mass spectrometry. J. Biol. Chem. 2004, 279, 50915-50922.
21. Fischer, F., Poetsch, A., Protein cleavage strategies for an improved analysis of the membrane proteome. Proteome Sci. 2006, 4, 2.
22. Santoni, V., Molloy, M., Rabilloud, T., Membrane proteins and proteomics: un amour impossible? Electrophoresis 2000, 21, 1054-1070.
23. Stenberg, F., Daley, D. O., Exploring membrane proteomes. in: Hagen, V. (Ed.), Proteomics Sample Preparation, Wiley-VCH, Weinheim 2008, pp. 303-312.
24. Weiner, J. H., Li, L., Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis. Biochim. Biophys. Acta 2008, 1778, 1698-1713.
25. Griffin, N. M., Schnitzer, J. E., Overcoming key technological challenges in using mass spectrometry for mapping cell surfaces in tissues. Mol. Cell Proteomics 2011, 10, R110 000935.