Hiding behind hydrophobicity: Transmembrane segments in mass spectrometry

Journal of Biological Chemistry

Volumn 279, Issue 49, 2004, Pages 50915-50922

  Eichacker, Lutz A ^a   Granvogl, Bernhard ^a   Mirus, Oliver ^a   Müller, Bernd Christian ^b   Miess, Christian ^b   Schleiff, Enrico ^a  

^a UNIVERSITY OF MUNICH   (Germany)

^b F HOFFMANN LA ROCHE LTD   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MEMBRANES; DATA REDUCTION; MASS SPECTROMETRY; PROTEINS;

CHLOROPLAST MEMBRANES; SILICO; TRANSMEMBRANE SEGMENTS;

HYDROPHOBICITY;

PROTEOME;

ARABIDOPSIS; ARTICLE; BIOINFORMATICS; CHLOROPLAST; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; HYDROPHOBICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DETERMINATION; STATISTICAL ANALYSIS; THYLAKOID MEMBRANE;

ARABIDOPSIS; CELL MEMBRANE; CHLOROPLASTS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; GENOME, PLANT; HUMANS; INTRACELLULAR MEMBRANES; MASS SPECTROMETRY; MODELS, STATISTICAL; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; PROTEOME; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; THYLAKOIDS; TRYPSIN;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 10944249586     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M405875200     Document Type: Article

References (44)

1. Canovas, F. M., Dumas-Gaudot, E., Recorbet, G., Jorrin, J., Mock, H. P., and Rossignol, M. (2004) Proteomics 4, 285-298
2. Cash, P. (2003) Adv. Biochem. Eng. Biotechnol. 83, 93-115
3. Lister, R., Chew, O., Lee, M. N., Heazlewood, J. L., Clifton, R., Parker, K. L., Millar, A. H., and Whelan, J. (2004) Plant Physiol. 134, 777-789
4. Sickmann, A., Reinders, J., Wagner, Y., Joppich, C., Zahedi, R., Meyer, H. E., Schonfisch, B., Perschil, I., Chacinska, A., Guiard, B., Rehling, P., Pfanner, N., and Meisinger, C. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 13207-13212
5. Peltier, J. B., Friso, G., Kalume, D. E., Roepstorff, P., Nilsson, F., Adamska, I., and van Wijk, K. J. (2000) Plant Cell 12, 319-341
6. Schäfer, H., Nau, K., Sickmann, A., Erdmann, R., and Meyer, H. E. (2001) Electrophoresis 22, 2955-2968
7. Fukao, Y., Hayashi, M., and Nishimura, M. (2002) Plant Cell Physiol. 43, 689-696
8. Turck, N., Richert, S., Gendry, P., Stutzmann, J., Kedinger, M., Leize, E., Simon-Assmann, P., Van Dorsselaer, A., and Launay, J. F. (2004) Proteomics 4, 93-105
9. Rachakonda, S., and Cartee, L. (2004) Curr. Med. Chem. 11, 775-793
10. Onyango, P. (2004) Curr. Cancer Drug Targets 4, 111-124
11. Cooper, R. A., and Carucci, D. J. (2004) Curr. Drug Targets Infect. Disord. 4, 41-51
12. Zolg, J. W., and Langen, H. (2004) Mol. Cell. Proteomics 3, 345-354
13. Whelan, S. A., and Hart, G. W. (2003) Circ. Res. 93, 1047-1058
14. Veenstra, T. D. (2003) Adv. Protein Chem. 65, 161-194
15. Zhu, H., Bilgin, M., and Snyder, M. (2003) Annu. Rev. Biochem. 72, 783-812
16. Rowley, A., Choudhary, J. S., Marzioch, M., Ward, M. A., Weir, M., Solari, R. C., and Blackstock, W. P. (2000) Methods 20, 383-397
17. Anderson, N. L., Matheson, A. D., and Steiner, S. (2000) Curr. Opin. Biotechnol. 11, 408-412
18. Aebersold, R., and Goodlett, D. R. (2001) Chem. Rev. 101, 269-295
19. Kashino, Y. (2003) J. Chromatogr. B 797, 191-216
20. van Wijk, K. J. (2001) Plant Physiol. 126, 501-508
21. Schägger, H., Cramer, W. A., and von Jagow, G. (1994) Anal. Biochem. 217, 220-230
22. Kyte, J., and Doolittle, R. F. (1982) J. Mol. Biol. 157, 105-132
23. Santoni, V., Rabilloud, T., Doumas, P., Rouquie, D., Mansion, M., Kieffer, S., Garin, J., and Rossignol, M. (1999) Electrophoresis 20, 705-711
24. Santoni, V., Kieffer, S., Desclaux, D., Masson, F., and Rabilloud, T. (2000) Electrophoresis 21, 3329-3344
25. Hippler, M., Klein, J., Fink, A., Allinger, T., and Hoerth, P. (2001) Plant J. 28, 595-606
26. Devreese, B., Vanrobaeys, F., Smet, J., Van Beeumen, J., and Van Coster, R. (2002) Electrophoresis 23, 2525-2533
27. Küchler, M., Decker, S., Hormann, F., Soll, J., and Heins, L. (2002) EMBO J. 21, 6136-6145
28. Thidholm, E., Lindstrom, V., Tissier, C., Robinson, C., Schroder, W. P., and Funk, C. (2002) FEBS Lett. 513, 217-222
29. Washburn, M. P., Wolters, D., and Yates, J. R., III (2001) Nat. Biotechnol. 19, 242-247
30. Venter, H., Ashcroft, A. E., Keen, J. N., Henderson, P. J., and Herbert, R. B. (2002) Biochem. J. 363, 243-252
31. Hixson, K. K., Rodriguez, N., Camp, D. G., III, Strittmatter, E. F., Lipton, M. S., and Smith, R. D. (2002) Electrophoresis 23, 3224-3232
32. Blonder, J., Conrads, T. P., Yu, L. R., Terunuma, A., Janini, G. M., Issaq, H. J., Vogel, J. C., and Veenstra, T. D. (2004) Proteomics 4, 31-45
33. Eckart, K., Eichacker, L., Sohrt, K., Schleiff, E., Heins, L., and Soll, J. (2002) EMBO Rep. 3, 557-562
34. Schleiff, E., Eichacker, L. A., Eckart, K., Becker, T., Mirus, O., Stahl, T., and Soll, J. (2003) Protein Sci. 12, 748-759
35. Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. (2001) J. Mol. Biol. 305, 567-580
36. Eichacker, L. A., Helfrich, M., Rüdiger, W., and Müller, B. (1996) J. Biol. Chem. 271, 32174-32179
37. Eichacker, L., and Müller, B. (April 21, 2001) German Patent 1001-19-597 DE
38. Shevchenko, A., Wilm, M., Vorm, O., and Mann, M. (1996) Anal. Chem. 68, 850-858
39. Eisenberg, D., Schwarz, E., Komaromy, M., and Wall, R. (1984) J. Mol. Biol. 179, 125-142
40. Black, S. D., and Mould, D. R. (1991) Anal. Biochem. 193, 72-82
41. Wimley, W. C. (2002) Protein Sci. 11, 301-312
42. Wilm, M., and Mann, M. (1996) Anal. Chem. 68, 1-8
43. Ulmschneider, M. B., and Sansom, M. S. (2001) Biochim. Biophys. Acta 1512, 1-14
44. Wu, C. C., and Yates, J. R., III (2003) Nat. Biotechnol. 21, 262-267