Protective association exhibited by the single nucleotide polymorphism (SNP) rs1052133 in the gene human 8-oxoguanine DNA glycosylase (hOGG1) with the risk of squamous cell carcinomas of the head & neck (SCCHN) among north Indians

Indian Journal of Medical Research

Volumn 133, Issue 6, 2011, Pages 605-612

  Mitra, Amit Kumar ^a   Singh, Sarvendra Vikram ^a   Garg, Vivek Kumar ^b   Sharma, Mandira ^b   Chaturvedi, Rashmi ^b   Rath, Srikanta Kumar ^a  

^a CENTRAL DRUG RESEARCH INSTITUTE   (India)

^b Lucknow Cancer Institute   (India)

Author keywords

BER; MAF; Odds ratio; OGG1; SCCHN; SNP

Indexed keywords

8 OXOGUANINE DNA GLYCOSYLASE 1; CYSTEINE; DNA; DNA GLYCOSYLTRANSFERASE; GLYCINE; SERINE; UNCLASSIFIED DRUG;

ALLELE; AMINO ACID SUBSTITUTION; ARTICLE; CANCER RISK; CASE CONTROL STUDY; CAUCASIAN; CONTROLLED STUDY; DNA SEQUENCE; EXON; GENE EXPRESSION; GENETIC ASSOCIATION; GENOTYPE; HEAD AND NECK CARCINOMA; HETEROZYGOSITY; HISTOPATHOLOGY; HOMOZYGOSITY; HUMAN; INDIA; INDIAN; MAJOR CLINICAL STUDY; MUTANT; POLYMERASE CHAIN REACTION; PROMOTER REGION; RACE DIFFERENCE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RISK FACTOR; SINGLE NUCLEOTIDE POLYMORPHISM; SQUAMOUS CELL CARCINOMA; SQUAMOUS CELL CARCINOMA OF THE HEAD AND NECK;

EID: 80052976265     PISSN: 09715916     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (33)

1. Lindahl T, Karran P, Wood RD. DNA excision repair pathways. Curr Opin Genet Dev 1997; 7: 158-69.
2. Kohno T, Shinmura K, Tosaka M, Tani M, Kim SR, Sugimura H, et al. Genetic polymorphisms and alternative splicing of the hOGG1 gene, that is involved in the repair of 8-hydroxyguanine in damaged DNA. Oncogene 1998; 16: 3219-25.
3. Memisoglu A, Samson L. Base excision repair in yeast and mammals. Mutat Res 2000; 451: 39-51.
4. Mohrenweiser HW, Wilson DM, 3rd, Jones IM. Challenges and complexities in estimating both the functional impact and the disease risk associated with the extensive genetic variation in human DNA repair genes. Mutat Res 2003; 526: 93-125.
5. Shinmura K, Yokota J. The OGG1 gene encodes a repair enzyme for oxidatively damaged DNA and is involved in human carcinogenesis. Antioxid Redox Signal 2001; 3: 597-609.
6. Weiss JM, Goode EL, Ladiges WC, Ulrich CM. Polymorphic variation in hOGG1 and risk of cancer: a review of the functional and epidemiologic literature. Mol Carcinog 2005; 42: 127-41.
7. Elahi A, Zheng Z, Park J, Eyring K, McCaffrey T, Lazarus P. The human OGG1 DNA repair enzyme and its association with orolaryngeal cancer risk. Carcinogenesis 2002; 23: 1229-34.
8. Sugimura H, Kohno T, Wakai K, Nagura K, Genka K, Igarashi H, et al. hOGG1 Ser326Cys polymorphism and lung cancer susceptibility. Cancer Epidemiol Biomarkers Prev 1999; 8: 669-74.
9. Xing DY, Tan W, Song N, Lin DX. Ser326Cys polymorphism in hOGG1 gene and risk of esophageal cancer in a Chinese population. Int J Cancer 2001; 95: 140-3.
10. Dherin C, Radicella JP, Dizdaroglu M, Boiteux S. Excision of oxidatively damaged DNA bases by the human alpha-hOgg1 protein and the polymorphic alpha-hOgg1(Ser326Cys) protein which is frequently found in human populations. Nucleic Acids Res 1999; 27: 4001-7.
11. Janssen K, Schlink K, Gotte W, Hippler B, Kaina B, Oesch F. DNA repair activity of 8-oxoguanine DNA glycosylase 1 (OGG1) in human lymphocytes is not dependent on genetic polymorphism Ser326/Cys326. Mutat Res 2001; 486: 207-16.
12. Arcand SL, Provencher D, Mes-Masson AM, Tonin PN. OGG1 Cys326 variant, allelic imbalance of chromosome band 3p25.3 and TP53 mutations in ovarian cancer. Int J Oncol 2005; 27: 1315-20.
13. Hashimoto T, Uchida K, Okayama N, Imate Y, Suehiro Y, Hamanaka Y, et al. Interaction of OGG1 Ser326Cys polymorphism with cigarette smoking in head and neck squamous cell carcinoma. Mol Carcinog 2006; 45: 344-8.
14. Monteiro E, Varzim G, Silva R, da Costa B, Lopes C. Polymorphisms of the human OGG1 gene in laryngeal cancer: implications in radiotherapy response and survival. Rev Laryngol Otol Rhinol (Bord) 2005; 126: 135-40.
15. Nohmi T, Kim SR, Yamada M. Modulation of oxidative mutagenesis and carcinogenesis by polymorphic forms of human DNA repair enzymes. Mutat Res 2005; 591: 60-73.
16. Takezaki T, Gao CM, Wu JZ, Li ZY, Wang JD, Ding JH, et al. hOGG1 Ser(326)Cys polymorphim and modification by environmental factors of stomach cancer risk in Chinese. Int J Cancer 2002; 99: 624-7.
17. Tsukino H, Hanaoka T, Otani T, Iwasaki M, Kobayashi M, Hara M, et al. hOGG1 Ser326Cys polymorphism, interaction with environmental exposures, and gastric cancer risk in Japanese populations. Cancer Sci 2004; 95: 977-83.
18. Vogel U, Olsen A, Wallin H, Overvad K, Tjonneland A, Nexo BA. No association between OGG1 Ser326Cys and risk of basal cell carcinoma. Cancer Epidemiol Biomarkers Prev 2004; 13: 1680-1.
19. Xu J, Zheng SL, Turner A, Isaacs SD, Wiley KE, Hawkins GA, et al. Associations between hOGG1 sequence variants and prostate cancer susceptibility. Cancer Res 2002; 62: 2253-7.
20. Bamshad M, Kivisild T, Watkins WS, Dixon ME, Ricker CE, Rao BB, et al. Genetic evidence on the origins of Indian caste populations. Genome Res 2001; 11: 994-1004.
21. Majumder PP. Ethnic populations of India as seen from an evolutionary perspective. J Biosci 2001; 26 (4 Suppl): 533-45.
22. Malhotra KC. Morphological composition of the people of India. J Hum Evol 1978; 7: 45-63.
23. Gadgil M, Joshi NV, Prasad UV, Manoharan S, Patil S. In the Indian human heritage. Hyderabad: Universities Press; 1998. p. 100-29.
24. The International HapMap Consortium. The International HapMap Project. Nature 2003; 426: 789-96.
25. Packer BR, Yeager M, Burdett L, Welch R, Beerman M, Qi L, et al. SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes. Nucleic Acids Res 2006; 34: D617-D21.
26. Packer BR, Yeager M, Staats B, Welch R, Crenshaw A, Kiley M, et al. SNP500Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes. Nucleic Acids Res 2004; 32: D528-D32.
27. Ramensky V, Bork P, Sunyaev S. Human non-synonymous SNPs: server and survey. Nucleic Acids Res 2002; 30: 3894-900.
28. Sunyaev S, Ramensky V, Bork P. Towards a structural basis of human non-synonymous single nucleotide polymorphisms. Trends Genet 2000; 16: 198-200.
29. Sunyaev S, Ramensky V, Koch I, Lathe W, 3rd, Kondrashov AS, Bork P. Prediction of deleterious human alleles. Hum Mol Genet. 2001; 10: 591-7.
30. Indian Genome Variation Consortium. Genetic landscape of the people of India: a canvas for disease gene exploration. J Genet 2008; 87: 3-20.
31. Hiyama T, Yoshihara M, Tanaka S, Chayama K. Genetic polymorphisms and head and neck cancer risk (Review). Int J Oncol 2008; 32: 945-73.
32. Cho EY, Hildesheim A, Chen CJ, Hsu MM, Chen IH, Mittl BF, et al. Nasopharyngeal carcinoma and genetic polymorphisms of DNA repair enzymes XRCC1 and hOGG1. Cancer Epidemiol Biomarkers Prev 2003; 12: 1100-4.
33. Gorgens H, Muller A, Kruger S, Kuhlisch E, Konig IR, Ziegler A, et al. Analysis of the base excision repair genes MTH1, OGG1 and MUTYH in patients with squamous oral carcinomas. Oral Oncol 2007; 43: 791-5.