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Volumn 54, Issue 9, 2011, Pages 806-812

Identification and functional annotation of novel microRNAs in the proximal sciatic nerve after sciatic nerve transection

Author keywords

microRNA; proximal sciatic nerve; rat; Solexa

Indexed keywords

MICRORNA; UNTRANSLATED RNA;

EID: 80052833427     PISSN: 16747305     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11427-011-4213-7     Document Type: Article
Times cited : (28)

References (37)
  • 1
    • 0029123229 scopus 로고
    • Modulation of NMDA receptor expression in the rat spinal cord by peripheral nerve injury and adrenal medullary grafting
    • Hama A T, Unnerstall J R, Siegan J B, et al. Modulation of NMDA receptor expression in the rat spinal cord by peripheral nerve injury and adrenal medullary grafting. Brain Res, 1995, 687: 103-113.
    • (1995) Brain Res , vol.687 , pp. 103-113
    • Hama, A.T.1    Unnerstall, J.R.2    Siegan, J.B.3
  • 2
    • 33746034164 scopus 로고    scopus 로고
    • Expression of myostatin RNA transcript and protein in gastrocnemius muscle of rats after sciatic nerve resection
    • Zhang D, Liu M, Ding F, et al. Expression of myostatin RNA transcript and protein in gastrocnemius muscle of rats after sciatic nerve resection. J Muscle Res Cell Motil, 2006, 27: 37-44.
    • (2006) J Muscle Res Cell Motil , vol.27 , pp. 37-44
    • Zhang, D.1    Liu, M.2    Ding, F.3
  • 3
    • 0032529346 scopus 로고    scopus 로고
    • Tenascin-R is antiadhesive for activated microglia that induce downregulation of the protein after peripheral nerve injury: a new role in neuronal protection
    • Angelov D N, Walther M, Streppel M, et al. Tenascin-R is antiadhesive for activated microglia that induce downregulation of the protein after peripheral nerve injury: a new role in neuronal protection. J Neurosci, 1998, 18: 6218-6229.
    • (1998) J Neurosci , vol.18 , pp. 6218-6229
    • Angelov, D.N.1    Walther, M.2    Streppel, M.3
  • 4
    • 77954239501 scopus 로고    scopus 로고
    • Altered neuronatin expression in the rat dorsal root ganglion after sciatic nerve transection
    • Chen K H, Yang C H, Cheng J T, et al. Altered neuronatin expression in the rat dorsal root ganglion after sciatic nerve transection. J Biomed Sci, 2010, 17: 41-47.
    • (2010) J Biomed Sci , vol.17 , pp. 41-47
    • Chen, K.H.1    Yang, C.H.2    Cheng, J.T.3
  • 5
    • 0032146734 scopus 로고    scopus 로고
    • Heat shock protein 27: developmental regulation and expression after peripheral nerve injury
    • Costigan M, Mannion R J, Kendall G, et al. Heat shock protein 27: developmental regulation and expression after peripheral nerve injury. J Neurosci, 1998, 18: 5891-5900.
    • (1998) J Neurosci , vol.18 , pp. 5891-5900
    • Costigan, M.1    Mannion, R.J.2    Kendall, G.3
  • 6
    • 33748928159 scopus 로고    scopus 로고
    • The diverse functions of microRNAs in animal development and disease
    • Kloosterman W P, Plasterk R H. The diverse functions of microRNAs in animal development and disease. Dev Cell, 2006, 11: 441-450.
    • (2006) Dev Cell , vol.11 , pp. 441-450
    • Kloosterman, W.P.1    Plasterk, R.H.2
  • 7
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V. The functions of animal microRNAs. Nature, 2004, 431: 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 8
    • 36148958682 scopus 로고    scopus 로고
    • MicroRNAs in cell proliferation, cell death, and tumorigenesis
    • Hwang H W, Mendell J T. MicroRNAs in cell proliferation, cell death, and tumorigenesis. Br J Cancer, 2007, 96: R40-R44.
    • (2007) Br J Cancer , vol.96 , pp. 40-44
    • Hwang, H.W.1    Mendell, J.T.2
  • 9
    • 33749528151 scopus 로고    scopus 로고
    • MiRNAs and apoptosis: RNAs to die for
    • Jovanovic M, Hengartner M O. miRNAs and apoptosis: RNAs to die for. Oncogene, 2006, 25: 6176-6187.
    • (2006) Oncogene , vol.25 , pp. 6176-6187
    • Jovanovic, M.1    Hengartner, M.O.2
  • 10
    • 33644499134 scopus 로고    scopus 로고
    • Cell-type-specific signatures of microRNAs on target mRNA expression
    • Sood P, Krek A, Zavolan M, et al. Cell-type-specific signatures of microRNAs on target mRNA expression. Proc Natl Acad Sci USA, 2006, 103: 2746-2751.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 2746-2751
    • Sood, P.1    Krek, A.2    Zavolan, M.3
  • 11
    • 0346458628 scopus 로고    scopus 로고
    • Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    • Kim J, Krichevsky A, Grad Y, et al. Identification of many microRNAs that copurify with polyribosomes in mammalian neurons. Proc Natl Acad Sci USA, 2004, 101: 360-365.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 360-365
    • Kim, J.1    Krichevsky, A.2    Grad, Y.3
  • 12
    • 77955115192 scopus 로고    scopus 로고
    • Identification and quantitative analyses of microRNAs located in the distal axons of sympathetic neurons
    • Natera-Naranjo O, Aschrafi A, Gioio A E, et al. Identification and quantitative analyses of microRNAs located in the distal axons of sympathetic neurons. RNA, 2010, 16: 1516-1529.
    • (2010) Rna , vol.16 , pp. 1516-1529
    • Natera-Naranjo, O.1    Aschrafi, A.2    Gioio, A.E.3
  • 13
    • 37249055188 scopus 로고    scopus 로고
    • MicroRNAs in vertebrate synapse development
    • Fiore R, Schratt G. MicroRNAs in vertebrate synapse development. Sci World J, 2007, 7: 167-177.
    • (2007) Sci World J , vol.7 , pp. 167-177
    • Fiore, R.1    Schratt, G.2
  • 14
    • 70450248489 scopus 로고    scopus 로고
    • MicroRNAs at the synapse
    • Schratt G. microRNAs at the synapse. Nat Rev Neurosci, 2009, 10: 842-849.
    • (2009) Nat Rev Neurosci , vol.10 , pp. 842-849
    • Schratt, G.1
  • 15
    • 49949116902 scopus 로고    scopus 로고
    • The impact of microRNAs on protein output
    • Baek D, Villen J, Shin C, et al. The impact of microRNAs on protein output. Nature, 2008, 455: 64-71.
    • (2008) Nature , vol.455 , pp. 64-71
    • Baek, D.1    Villen, J.2    Shin, C.3
  • 16
    • 49949117302 scopus 로고    scopus 로고
    • Widespread changes in protein synthesis induced by microRNAs
    • Selbach M, Schwanhausser B, Thierfelder N, et al. Widespread changes in protein synthesis induced by microRNAs. Nature, 2008, 455: 58-63.
    • (2008) Nature , vol.455 , pp. 58-63
    • Selbach, M.1    Schwanhausser, B.2    Thierfelder, N.3
  • 17
    • 69749105831 scopus 로고    scopus 로고
    • Altered microRNA expression following traumatic spinal cord injury
    • Liu N K, Wang X F, Lu Q B, et al. Altered microRNA expression following traumatic spinal cord injury. Exp Neurol, 2009, 219: 424-429.
    • (2009) Exp Neurol , vol.219 , pp. 424-429
    • Liu, N.K.1    Wang, X.F.2    Lu, Q.B.3
  • 18
    • 77949269036 scopus 로고    scopus 로고
    • Responses of microRNAs 124a and 223 following spinal cord injury in mice
    • Nakanishi K, Nakasa T, Tanaka N, et al. Responses of microRNAs 124a and 223 following spinal cord injury in mice. Spinal Cord, 2010, 48: 192-196.
    • (2010) Spinal Cord , vol.48 , pp. 192-196
    • Nakanishi, K.1    Nakasa, T.2    Tanaka, N.3
  • 19
    • 74049164557 scopus 로고    scopus 로고
    • Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    • Chen X, Li Q, Wang J, et al. Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol, 2009, 10: R78.
    • (2009) Genome Biol , vol.10
    • Chen, X.1    Li, Q.2    Wang, J.3
  • 20
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R, Li Y, Kristiansen K, et al. SOAP: short oligonucleotide alignment program. Bioinformatics, 2008, 24: 713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3
  • 21
    • 77950433105 scopus 로고    scopus 로고
    • MicroRNAs of Bombyx mori identified by Solexa sequencing
    • Liu S, Li D, Li Q, et al. MicroRNAs of Bombyx mori identified by Solexa sequencing. BMC Genomics, 2010, 11: 148.
    • (2010) BMC Genomics , vol.11 , pp. 148
    • Liu, S.1    Li, D.2    Li, Q.3
  • 22
    • 24644476482 scopus 로고    scopus 로고
    • MicroRNA identification based on sequence and structure alignment
    • Wang X, Zhang J, Li F, et al. MicroRNA identification based on sequence and structure alignment. Bioinformatics, 2005, 21: 3610-3614.
    • (2005) Bioinformatics , vol.21 , pp. 3610-3614
    • Wang, X.1    Zhang, J.2    Li, F.3
  • 23
    • 33644750115 scopus 로고    scopus 로고
    • MiRBase: microRNA sequences, targets and gene nomenclature
    • Griffiths-Jones S, Grocock R J, van Dongen S, et al. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res, 2006, 34: D140-D144.
    • (2006) Nucleic Acids Res , vol.34 , pp. 140-144
    • Griffiths-Jones, S.1    Grocock, R.J.2    van Dongen, S.3
  • 25
    • 24644476482 scopus 로고    scopus 로고
    • MicroRNA identification based on sequence and structure alignment
    • Wang X, Zhang J, Li F, et al. MicroRNA identification based on sequence and structure alignment. Bioinformatics, 2005, 21: 3610-3614.
    • (2005) Bioinformatics , vol.21 , pp. 3610-3614
    • Wang, X.1    Zhang, J.2    Li, F.3
  • 26
    • 34547596338 scopus 로고    scopus 로고
    • MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features
    • Jiang P, Wu H, Wang W, et al. MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res, 2007, 35: W339-W344.
    • (2007) Nucleic Acids Res , vol.35 , pp. 339-344
    • Jiang, P.1    Wu, H.2    Wang, W.3
  • 27
    • 28344440823 scopus 로고    scopus 로고
    • MicroRNA function: multiple mechanisms for a tiny RNA?
    • Pillai R S. MicroRNA function: multiple mechanisms for a tiny RNA? RNA, 2005, 11: 1753-1761.
    • (2005) Rna , vol.11 , pp. 1753-1761
    • Pillai, R.S.1
  • 28
    • 33646344978 scopus 로고    scopus 로고
    • STEM: a tool for the analysis of short time series gene expression data
    • Ernst J, Bar-Joseph Z. STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics, 2006, 7: 191.
    • (2006) BMC Bioinformatics , vol.7 , pp. 191
    • Ernst, J.1    Bar-Joseph, Z.2
  • 29
    • 34447309058 scopus 로고    scopus 로고
    • De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
    • Ng K L, Mishra S K. De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics, 2007, 23: 1321-1330.
    • (2007) Bioinformatics , vol.23 , pp. 1321-1330
    • Ng, K.L.1    Mishra, S.K.2
  • 30
    • 29144470346 scopus 로고    scopus 로고
    • Real-time quantification of microRNAs by stem-loop RT-PCR
    • Chen C, Ridzon D A, Broomer A J, et al. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res, 2005, 33: e179.
    • (2005) Nucleic Acids Res , vol.33
    • Chen, C.1    Ridzon, D.A.2    Broomer, A.J.3
  • 31
    • 0346094457 scopus 로고    scopus 로고
    • Prediction of mammalian microRNA targets
    • Lewis B P, Shih I H, Jones-Rhoades M W, et al. Prediction of mammalian microRNA targets. Cell, 2003, 115: 787-798.
    • (2003) Cell , vol.115 , pp. 787-798
    • Lewis, B.P.1    Shih, I.H.2    Jones-Rhoades, M.W.3
  • 32
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis B P, Burge C B, Bartel D P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 2005, 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 33
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 2004, 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 34
    • 67651034231 scopus 로고    scopus 로고
    • Fine-tuning neural gene expression with microRNAs
    • Schratt G. Fine-tuning neural gene expression with microRNAs. Curr Opin Neurobiol, 2009, 19: 213-219.
    • (2009) Curr Opin Neurobiol , vol.19 , pp. 213-219
    • Schratt, G.1
  • 35
    • 1942489034 scopus 로고    scopus 로고
    • Developmental regulation of homeobox gene expression in dorsal root ganglion neurons is not recapitulated during regeneration of the crushed sciatic nerve
    • Vogelaar C F, Hoekman M F, Brakkee J H, et al. Developmental regulation of homeobox gene expression in dorsal root ganglion neurons is not recapitulated during regeneration of the crushed sciatic nerve. Neuroscience, 2004, 125: 645-650.
    • (2004) Neuroscience , vol.125 , pp. 645-650
    • Vogelaar, C.F.1    Hoekman, M.F.2    Brakkee, J.H.3
  • 36
    • 2142654329 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of HOXB8 mRNA
    • Yekta S, Shih I H, Bartel D P. MicroRNA-directed cleavage of HOXB8 mRNA. Science, 2004, 304: 594-596.
    • (2004) Science , vol.304 , pp. 594-596
    • Yekta, S.1    Shih, I.H.2    Bartel, D.P.3
  • 37
    • 39749110083 scopus 로고    scopus 로고
    • Small non-coding RNAs in animal development
    • Stefani G, Slack F J. Small non-coding RNAs in animal development. Nat Rev Mol Cell Biol, 2008, 9: 219-230.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 219-230
    • Stefani, G.1    Slack, F.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.