Identification of many microRNAs that copurify with polyribosomes in mammalian neurons

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 1, 2004, Pages 360-365

  Kim, John ^a   Krichevsky, Anna ^a   Grad, Yonatan ^b   Hayes, Gabriel D ^a   Kosik, Kenneth S ^a   Church, George M ^b   Ruvkun, Gary ^a  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

Author keywords

Messenger ribonucleoprotein complex (mRNP); Noncoding RNA; Translational control

Indexed keywords

MICRORNA;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BRAIN CORTEX; CELL FRACTIONATION; CONTROLLED STUDY; NERVE CELL; NONHUMAN; POLYSOME; PRIORITY JOURNAL; RAT; REGULATORY MECHANISM; RNA ANALYSIS; RNA SEQUENCE; RNA TRANSLATION; SEQUENCE ANALYSIS; TRANSLATION REGULATION;

ANIMALS; BASE SEQUENCE; CELL FRACTIONATION; CELLS, CULTURED; CEREBRAL CORTEX; MICE; MICRORNAS; NEURONAL PLASTICITY; NEURONS; POLYRIBOSOMES; PROTEIN BIOSYNTHESIS; RATS; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ANIMALIA; MAMMALIA;

EID: 0346458628     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2333854100     Document Type: Article

References (70)

1. Lee, R. C., Feinbaum, R. L. & Ambros, V. (1993) Cell 75, 843-854.
2. Wightman, B., Ha, I. & Ruvkun, G. (1993) Cell 75, 855-862.
3. Reinhart, B. J., Slack, F. J., Basson, M., Pasquinelli, A. E., Bettinger, J. C., Rougvie, A. E., Horvitz, H. R. & Ruvkun, G. (2000) Nature 403, 901-906.
4. Slack, F. J., Basson, M., Liu, Z., Ambros, V., Horvitz, H. R. & Ruvkun, G. (2000) Mol. Cell 5, 659-669.
5. Rougvie, A. E. (2001) Nat. Rev. Genet. 2, 690-701.
6. Pasquinelli, A. E. & Ruvkun, G. (2002) Annu. Rev. Cell. Dev. Biol. 18, 495-513.
7. Moss, E. G., Lee, R. C. & Ambros, V. (1997) Cell 88, 637-646.
8. Lin, S. Y., Johnson, S. M., Abraham, M., Vella, M. C., Pasquinelli, A., Gamberi, C., Gottlieb, E. & Slack, F. J. (2003) Dev. Cell 4, 639-650.
9. Abrahante, J. E., Daul, A. L., Li, M., Volk, M. L., Tennessen, J. M., Miller, E. A. & Rougvie, A. E. (2003) Dev. Cell 4, 625-637.
10. Brennecke, J., Hipfner, D. R., Stark, A., Russell, R. B. & Cohen, S. M. (2003) Cell 113, 25-36.
11. Lau, N. C., Lim, L. P., Weinstein, E. G. & Bartel, D. P. (2001) Science 294, 858-862.
12. Lee, R. C. & Ambros, V. (2001) Science 294, 862-864.
13. Lagos-Quintana, M., Rauhut, R., Lendeckel, W. & Tuschl, T. (2001) Science 294, 853-858.
14. Lagos-Quintana, M., Rauhut, R., Yalcin, A., Meyer, J., Lendeckel, W. & Tuschl, T. (2002) Curr. Biol. 12, 735-739.
15. Lagos-Quintana, M., Rauhut, R., Meyer, J., Borkhardt, A. & Tuschl, T. (2003) RNA 9, 175-179.
16. Mourelatos, Z., Dostie, J., Paushkin, S., Sharma, A., Charroux, B., Abel, L., Rappsilber, J., Mann, M. & Dreyfuss, G. (2002) Genes Dev. 16, 720-728.
17. Rhoades, M. W., Reinhart, B. J., Lim, L. P., Burge, C. B., Bartel, B. & Bartel, D. P. (2002) Cell 110, 513-520.
18. Llave, C., Kasschau, K. D., Rector, M. A. & Carrington, J. C. (2002) Plant Cell 14, 1605-1619.
19. Reinhart, B. J. & Bartel, D. P. (2002) Science 297, 1831.
20. Reinhart, B. J., Weinstein, E. G., Rhoades, M. W., Bartel, B. & Bartel, D. P. (2002) Genes Dev. 16, 1616-1626.
21. Dostie, J., Mourelatos, Z., Yang, M., Sharma, A. & Dreyfuss, G. (2003) RNA 9, 180-186.
22. Hall, I. M., Noma, K. & Grewal, S. I. (2603) Proc. Natl. Acad. Sci. USA 100, 193-198.
23. Lim, L. P., Glasner, M. E., Yekta, S., Burge, C. B. & Bartel, D. P. (2003) Science 299, 1540.
24. Lim, L. P., Lau, N. C., Weinstein, E. G., Abdelhakim, A., Yekta, S., Rhoades, M. W., Burge, C. B. & Bartel, D. P. (2003) Genes Dev. 17, 991-1008.
25. Ambros, V., Lee, R. C., Lavanway, A., Williams, P. T. & Jewell, D. (2003) Curr. Biol. 13, 807-818.
26. Grad, Y., Aach, J., Hayes, G. D., Reinhart, B. J., Church, G. M., Ruvkun, G. & Kim, J. (2003) Mol. Cell 11, 1253-1263.
27. Grishok, A., Pasquinelli, A. E., Conte, D., Li, N., Parrish, S., Ha, I., Baillie, D. L., Fire, A., Ruvkun, G. & Mello, C. C. (2001) Cell 106, 23-34.
28. Hutvagner, G., McLachlan, J., Pasquinelli, A. E., Balint, E., Tuschl, T. & Zamore, P. D. (2001) Science 293, 834-838.
29. Ketting, R. F., Fischer, S. E., Bernstein, E., Sijen, T., Hannon, G. J. & Plasterk, R. H. (2001) Genes Dev. 15, 2654-2659.
30. Carmell, M. A., Xuan, Z., Zhang, M. Q. & Hannon, G. J. (2002) Genes Dev. 16, 2733-2742.
31. Schauer, S. E., Jacobsen, S. E., Meinke, D. W. & Ray, A. (2002) Trends Plant Sci 7, 487-491.
32. Jiang, C. & Schuman, E. M. (2002) Trends Biochem. Sci. 27, 506-513.
33. Steward, O. & Schuman, E. M. (2001) Annu. Rev. Neurosci. 24, 299-325.
34. Job, C. & Eberwine, J. (2001) Nat. Rev. Neurosci. 2, 889-898.
35. Brittis, P. A., Lu, Q. & Flanagan, J. G. (2002) Cell 110, 223-235.
36. Steward, O. (2002) Cell 110, 537-540.
37. Zhang, X. & Poo, M. M. (2002) Neuron 36, 675-688.
38. Eberwine, J., Miyashiro, K., Kacharmina, J. E. & Job, C. (2001) Proc. Natl. Acad. Sci. USA 98, 7080-7085.
39. Mayford, M., Baranes, D., Podsypanina, K. & Kandel, E. R. (1996) Proc. Natl. Acad. Sci. USA 93, 13250-13255.
40. Blichenberg, A., Schwanke, B., Rehbein, M., Garner, C. C., Richter, D. & Kindler, S. (1999) J. Neurosci. 19, 8818-8829.
41. Rook, M. S., Lu, M. & Kosik, K. S. (2000) J. Neurosci. 20, 6385-6393.
42. Mori, Y., Imaizumi, K., Katayama, T., Yoneda, T. & Tohyama, M. (2000) Nat. Neurosci. 3, 1079-1084.
43. Angenstein, F., Evans, A. M., Settlage, R. E., Moran, S. T., Ling, S. C., Klintsova, A. Y., Shabanowitz, J., Hunt, D. F. & Greenough, W. T. (2002) J. Neurosci. 22, 8827-8837.
44. Kang, H. & Schuman, E. M. (1996) Science 273, 1402-1406.
45. Campbell, D. S. & Holt, C. E. (2001) Neuron 32, 1013-1026.
46. Aakalu, G., Smith, W. B., Nguyen, N., Jiang, C. & Schuman, E. M. (2001) Neuron 30, 489-502.
47. Martin, K. C. & Kosik, K. S. (2002) Nat. Rev. Neurosci. 3, 813-820.
48. Krichevsky, A. M. & Kosik, K. S. (2001) Neuron 32, 683-696.
49. Ausubel, F. M., Brent, R., Kingston, R., Moore, D., Seidman, J., Smith, J. & Struhl, K., eds. (1995) Current Protocols in Molecular Biology (Wiley, New York).
50. Mathews, D. H., Sabina, J., Zuker, M. & Turner, D. H. (1999) J. Mol. Biol. 288, 911-940.
51. Houbaviy, H. B., Murray, M. F. & Sharp, P. A. (2003) Dev. Cell 5, 351-358.
52. Zuker, M., Mathews, D. H. & Turner, D. H. (1999) in RNA Biochemistry and Biotechnology, ed. Clark, B. F. C. (Kluwer, Dordrecht, The Netherlands), pp. 11-43.
53. Knowles, R. B., Sabry, J. H., Martone, M. E., Deerinck, T. J., Ellisman, M. H., Bassell, G. J. & Kosik, K. S. (1996) J. Neurosci. 16, 7812-7820.
54. De Diego Otero, Y., Severijnen, L. A., van Cappellen, G., Schrier, M., Oostra, B. & Willemsen, R. (2002) Mol. Cell. Biol. 22, 8332-8341.
55. Kosik, K. S. & Krichevsky, A. M. (2002) Sci. STKE 2002, PE16.
56. Steward, O. & Worley, P. F. (2001) Proc. Natl. Acad. Sci. USA 98, 7062-7068.
57. Olsen, P. H. & Ambros, V. (1999) Dev. Biol. 216, 671-680.
58. Dotti, C. G., Sullivan, C. A. & Banker, G. A. (1988) J. Neurosci. 8, 1454-1468.
59. Craig, A. M. & Banker, G. (1994) Annu. Rev. Neurosci. 17, 267-310.
60. Fletcher, T. L., Cameron, P., De Camilli, P. & Banker, G. (1991) J. Neurosci. 11, 1617-1626.
61. Fletcher, T. L., De Camilli, P. & Banker, G. (1994) J. Neurosci. 14, 6695-6706.
62. Cepko, C. L., Austin, C. P., Yang, X., Alexiades, M. & Ezzeddine, D. (1996) Proc. Natl. Acad. Sci. USA 93, 589-595.
63. Bossing, T., Udolph, G., Doe, C. Q. & Technau, G. M. (1996) Dev. Biol. 179, 41-64.
64. Schmidt, H., Rickert, C., Bossing, T., Vef, O., Urban, J. & Technau, G. M. (1997) Dev. Biol. 189, 186-204.
65. Schmid, A., Chiba, A. & Doe, C. Q. (1999) Development (Cambridge, U.K.) 126, 4653-4689.
66. Isshiki, T., Pearson, B., Holbrook, S. & Doe, C. Q. (2001) Cell 106, 511-521.
67. Harris, W. A. (2001) Dev. Cell 1, 313-314.
68. Caudy, A. A., Myers, M., Hannon, G. J. & Hammond, S. M. (2002) Genes Dev. 16, 2491-2496.
69. Ohashi, S., Koike, K., Omori, A., Ichinose, S., Ohara, S., Kobayashi, S., Sato, T. A. & Anzai, K. (2002) J. Biol. Chem. 277, 37804-37810.
70. Rice, P., Longden, I. & Bleasby, A. (2000) Trends Genet. 16, 276-277.