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Volumn 50, Issue 37, 2011, Pages 7881-7890

Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN REMODELING COMPLEX; CONCENTRATION-DEPENDENT; DNA BINDING; DNA TRANSLOCATION; DNA-BINDING PROPERTIES; DOUBLE STRANDED DNA; FLUORESCENCE ANISOTROPY; PHYSICAL MOVEMENTS; PROCESSIVITY; S.CEREVISIAE; SUBSEQUENT HYDROLYSIS; TRANSLOCASES;

EID: 80052773298     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi200837b     Document Type: Article
Times cited : (8)

References (40)
  • 1
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • DOI 10.1038/38444
    • Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution Nature 389, 251-260 (Pubitemid 27406632)
    • (1997) Nature , vol.389 , Issue.6648 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 2
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • DOI 10.1038/nature01595
    • Richmond, T. J. and Davey, C. A. (2003) The structure of DNA in the nucleosome core Nature 423, 145-150 (Pubitemid 36569532)
    • (2003) Nature , vol.423 , Issue.6936 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 3
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • Clapier, C. R. and Cairns, B. R. (2009) The biology of chromatin remodeling complexes Annu. Rev. Biochem. 78, 273-304
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 4
    • 0032488855 scopus 로고    scopus 로고
    • Eukaryotic transcription: An interlaced network of transcription factors and chromatin-modifying machines
    • DOI 10.1016/S0092-8674(00)80924-1
    • Kadonaga, J. T. (1998) Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines Cell 92, 307-313 (Pubitemid 28093009)
    • (1998) Cell , vol.92 , Issue.3 , pp. 307-313
    • Kadonaga, J.T.1
  • 5
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • DOI 10.1126/science.1063127
    • Jenuwein, T. and Allis, C. D. (2001) Translating the histone code Science 293, 1074-1080 (Pubitemid 32758077)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 7
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • DOI 10.1038/47412
    • Strahl, B. D. and Allis, C. D. (2000) The language of covalent histone modifications Nature 403, 41-45 (Pubitemid 30038513)
    • (2000) Nature , vol.403 , Issue.6765 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 8
    • 0035313855 scopus 로고    scopus 로고
    • Mechanisms for ATP-dependent chromatin remodelling
    • DOI 10.1016/S0959-437X(00)00172-6
    • Flaus, A. and Owen-Hughes, T. (2001) Mechanisms for ATP-dependent chromatin remodelling Curr. Opin. Genet. Dev. 11, 148-154 (Pubitemid 32209198)
    • (2001) Current Opinion in Genetics and Development , vol.11 , Issue.2 , pp. 148-154
    • Flaus, A.1    Owen-Hughes, T.2
  • 9
    • 0029157378 scopus 로고
    • Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
    • Eisen, J. A., Sweder, K. S., and Hanawalt, P. C. (1995) Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions Nucleic Acids Res. 23, 2715-2723
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2715-2723
    • Eisen, J.A.1    Sweder, K.S.2    Hanawalt, P.C.3
  • 13
    • 0037102562 scopus 로고    scopus 로고
    • Chromatin remodeling by RSC involves ATP-dependent DNA translocation
    • Saha, A., Wittmeyer, J., and Cairns, B. R. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation Genes Dev. 16, 2120-2134
    • (2002) Genes Dev. , vol.16 , pp. 2120-2134
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 15
    • 0032214123 scopus 로고    scopus 로고
    • Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF
    • Cairns, B. R., Erdjument-Bromage, H., Tempst, P., Winston, F., and Kornberg, R. D. (1998) Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF Mol. Cell 2, 639-651 (Pubitemid 128379089)
    • (1998) Molecular Cell , vol.2 , Issue.5 , pp. 639-651
    • Cairns, B.R.1    Erdjument-Bromage, H.2    Tempst, P.3    Winston, F.4    Kornberg, R.D.5
  • 16
    • 79958858041 scopus 로고    scopus 로고
    • The RSC chromatin remodelling ATPase translocates DNA with high force and small step size
    • Sirinakis, G., Clapier, C. R., Gao, Y., Viswanathan, R., Cairns, B. R., and Zhang, Y. (2011) The RSC chromatin remodelling ATPase translocates DNA with high force and small step size EMBO J. 30, 2364-2372
    • (2011) EMBO J. , vol.30 , pp. 2364-2372
    • Sirinakis, G.1    Clapier, C.R.2    Gao, Y.3    Viswanathan, R.4    Cairns, B.R.5    Zhang, Y.6
  • 17
    • 0031769946 scopus 로고    scopus 로고
    • Sth1p, a Saccharomyces cerevisiae Snf2p/Swi2p homolog, is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins
    • Du, J., Nasir, I., Benton, B. K., Kladde, M. P., and Laurent, B. C. (1998) Sth1p, a Saccharomyces cerevisiae Snf2p/Swi2p homolog, is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins Genetics 150, 987-1005 (Pubitemid 28510029)
    • (1998) Genetics , vol.150 , Issue.3 , pp. 987-1005
    • Du, J.1    Nasir, I.2    Benton, B.K.3    Kladde, M.P.4    Laurent, B.C.5
  • 18
    • 35648958216 scopus 로고    scopus 로고
    • Kinetic model for the ATP-dependent translocation of Saccharomyces cerevisiae RSC along double-stranded DNA
    • DOI 10.1021/bi700930n
    • Fischer, C. J., Saha, A., and Cairns, B. R. (2007) Kinetic model for the ATP-dependent translocation of Saccharomyces cerevisiae RSC along double-stranded DNA Biochemistry 46, 12416-12426 (Pubitemid 350027405)
    • (2007) Biochemistry , vol.46 , Issue.43 , pp. 12416-12426
    • Fischer, C.J.1    Saha, A.2    Cairns, B.R.3
  • 19
    • 0033947417 scopus 로고    scopus 로고
    • Monte Carlo applications to thermal and chemical denaturation experiments of nucleic acids and proteins
    • Williams, D. J. and Hall, K. B. (2000) Monte Carlo applications to thermal and chemical denaturation experiments of nucleic acids and proteins Methods Enzymol. 321, 330-352 (Pubitemid 30457553)
    • (2000) Methods in Enzymology , vol.321 , pp. 330-352
    • Williams, D.J.1    Hall, K.B.2
  • 20
    • 0026750648 scopus 로고
    • Monte Carlo method for determining complete confidence probability distributions of estimated model parameters
    • Straume, M. and Johnson, M. L. (1992) Monte Carlo method for determining complete confidence probability distributions of estimated model parameters Methods Enzymol. 210, 117-129
    • (1992) Methods Enzymol. , vol.210 , pp. 117-129
    • Straume, M.1    Johnson, M.L.2
  • 22
    • 0038607629 scopus 로고    scopus 로고
    • ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase
    • DOI 10.1074/jbc.M301283200
    • Levin, M. K., Gurjar, M. M., and Patel, S. S. (2003) ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase J. Biol. Chem. 278, 23311-23316 (Pubitemid 36830145)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.26 , pp. 23311-23316
    • Levin, M.K.1    Gurjar, M.M.2    Patel, S.S.3
  • 23
    • 0032504059 scopus 로고    scopus 로고
    • Activated RSC-nucleosome complex and persistently altered form of the nucleosome
    • DOI 10.1016/S0092-8674(00)81218-0
    • Lorch, Y., Cairns, B. R., Zhang, M., and Kornberg, R. D. (1998) Activated RSC-nucleosome complex and persistently altered form of the nucleosome Cell 94, 29-34 (Pubitemid 28347466)
    • (1998) Cell , vol.94 , Issue.1 , pp. 29-34
    • Lorch, Y.1    Cairns, B.R.2    Zhang, M.3    Kornberg, R.D.4
  • 24
    • 0032102956 scopus 로고    scopus 로고
    • Characterisation of Bacillus stearothermophilus PcrA helicase: Evidence against an active rolling mechanism
    • DOI 10.1093/nar/26.11.2686
    • Bird, L. E., Brannigan, J. A., Subramanya, H. S., and Wigley, D. B. (1998) Characterisation of Bacillus stearothermophilus PcrA helicase: evidence against an active rolling mechanism Nucleic Acids Res. 26, 2686-2693 (Pubitemid 28297383)
    • (1998) Nucleic Acids Research , vol.26 , Issue.11 , pp. 2686-2693
    • Bird, L.E.1    Brannigan, J.A.2    Subramanya, H.S.3    Wigley, D.B.4
  • 25
    • 0032907367 scopus 로고    scopus 로고
    • A region near the C-terminal end of Escherichia coli DNA helicase II is required for single-stranded DNA binding
    • Mechanic, L. E., Latta, M. E., and Matson, S. W. (1999) A region near the C-terminal end of Escherichia coli DNA helicase II is required for single-stranded DNA binding J. Bacteriol. 181, 2519-2526 (Pubitemid 29181578)
    • (1999) Journal of Bacteriology , vol.181 , Issue.8 , pp. 2519-2526
    • Mechanic, L.E.1    Latta, M.E.2    Matson, S.W.3
  • 26
    • 0026546001 scopus 로고
    • Allosteric effects of nucleotide cofactors on Escherichia coli Rep helicase-DNA binding
    • Wong, I. and Lohman, T. M. (1992) Allosteric effects of nucleotide cofactors on Escherichia coli Rep helicase-DNA binding Science 256, 350-355
    • (1992) Science , vol.256 , pp. 350-355
    • Wong, I.1    Lohman, T.M.2
  • 27
    • 26944462793 scopus 로고    scopus 로고
    • Nucleosome remodelers on track
    • DOI 10.1038/nsmb0905-732, PII NSMB0905732
    • Becker, P. B. (2005) Nucleosome remodelers on track Nat. Struct. Mol. Biol. 12, 732-733 (Pubitemid 43086243)
    • (2005) Nature Structural and Molecular Biology , vol.12 , Issue.9 , pp. 732-733
    • Becker, P.B.1
  • 28
    • 0027182114 scopus 로고
    • Helicases: Amino acid sequence comparisons and structure-function relationships
    • Gorbalenya, A. E. and Koonin, E. V. (1993) Helicases: amino-acid sequence comparisons and structure-function relationships Curr. Opin. Struct. Biol. 3, 419-429 (Pubitemid 23207576)
    • (1993) Current Opinion in Structural Biology , vol.3 , Issue.3 , pp. 419-429
    • Gorbalenya, A.E.1    Koonin, E.V.2
  • 29
    • 70449436543 scopus 로고    scopus 로고
    • Mechanisms of interactions of the nucleotide cofactor with the RepA protein of plasmid RSF1010. Binding dynamics studied using the fluorescence stopped-flow method
    • Andreeva, I. E., Roychowdhury, A., Szymanski, M. R., Jezewska, M. J., and Bujalowski, W. (2009) Mechanisms of interactions of the nucleotide cofactor with the RepA protein of plasmid RSF1010. Binding dynamics studied using the fluorescence stopped-flow method Biochemistry 48, 10620-10636
    • (2009) Biochemistry , vol.48 , pp. 10620-10636
    • Andreeva, I.E.1    Roychowdhury, A.2    Szymanski, M.R.3    Jezewska, M.J.4    Bujalowski, W.5
  • 30
    • 1342346600 scopus 로고    scopus 로고
    • The DNA Binding Properties of the Escherichia coli RecQ Helicase
    • DOI 10.1074/jbc.M311272200
    • Dou, S. X., Wang, P. Y., Xu, H. Q., and Xi, X. G. (2004) The DNA binding properties of the Escherichia coli RecQ helicase J. Biol. Chem. 279, 6354-6363 (Pubitemid 38248768)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.8 , pp. 6354-6363
    • Dou, S.-X.1    Wang, P.-Y.2    Qiang Xu, H.3    Xi, X.G.4
  • 31
    • 0029813340 scopus 로고    scopus 로고
    • Interactions of Escherichia coli primary replicative helicase DnaB protein with nucleotide cofactors
    • Jezewska, M. J., Kim, U. S., and Bujalowski, W. (1996) Interactions of Escherichia coli primary replicative helicase DnaB protein with nucleotide cofactors Biophys. J. 71, 2075-2086 (Pubitemid 26325986)
    • (1996) Biophysical Journal , vol.71 , Issue.4 , pp. 2075-2086
    • Jezewska, M.J.1    Kim, U.-S.2    Bujalowski, W.3
  • 32
    • 0026646192 scopus 로고
    • DNA-induced dimerization of the Escherichia coli rep helicase. Allosteric effects of single-stranded and duplex DNA
    • Wong, I., Chao, K. L., Bujalowski, W., and Lohman, T. M. (1992) DNA-induced dimerization of the Escherichia coli rep helicase. Allosteric effects of single-stranded and duplex DNA J. Biol. Chem. 267, 7596-7610
    • (1992) J. Biol. Chem. , vol.267 , pp. 7596-7610
    • Wong, I.1    Chao, K.L.2    Bujalowski, W.3    Lohman, T.M.4
  • 33
    • 33745043254 scopus 로고    scopus 로고
    • Allosteric interactions between the nucleotide-binding sites and the ssDNA-binding site in the PriA helicase-ssDNA complex. 3
    • DOI 10.1021/bi0518287
    • Lucius, A. L., Jezewska, M. J., and Bujalowski, W. (2006) Allosteric interactions between the nucleotide-binding sites and the ssDNA-binding site in the PriA helicase-ssDNA complex. 3 Biochemistry 45, 7237-7255 (Pubitemid 43877411)
    • (2006) Biochemistry , vol.45 , Issue.23 , pp. 7237-7255
    • Lucius, A.L.1    Jezewska, M.J.2    Bujalowski, W.3
  • 34
    • 0031911760 scopus 로고    scopus 로고
    • Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases
    • Korolev, S., Yao, N., Lohman, T. M., Weber, P. C., and Waksman, G. (1998) Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases Protein Sci. 7, 605-610 (Pubitemid 28130882)
    • (1998) Protein Science , vol.7 , Issue.3 , pp. 605-610
    • Korolev, S.1    Yao, N.2    Lohman, T.M.3    Weber, P.C.4    Waksman, G.5
  • 35
    • 79958858041 scopus 로고    scopus 로고
    • The RSC chromatin remodelling ATPase translocates DNA with high force and small step size
    • Submitted to
    • Sirinakis, G., Clapier, C. R., Gao, Y., Viswanathan, R., Cairns, B. R., and Zhang, Y. The RSC chromatin remodelling ATPase translocates DNA with high force and small step size. Submitted to EMBO J.
    • EMBO J.
    • Sirinakis, G.1    Clapier, C.R.2    Gao, Y.3    Viswanathan, R.4    Cairns, B.R.5    Zhang, Y.6
  • 37
    • 9244235535 scopus 로고    scopus 로고
    • Mechanism of ATP-dependent translocation of E. coli UvrD monomers along single-stranded DNA
    • DOI 10.1016/j.jmb.2004.10.005, PII S0022283604012860
    • Fischer, C. J., Maluf, N. K., and Lohman, T. M. (2004) Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA J. Mol. Biol. 344, 1287-1309 (Pubitemid 39550478)
    • (2004) Journal of Molecular Biology , vol.344 , Issue.5 , pp. 1287-1309
    • Fischer, C.J.1    Maluf, N.K.2    Lohman, T.M.3
  • 38
    • 34247602963 scopus 로고    scopus 로고
    • A Nonuniform Stepping Mechanism for E. coli UvrD Monomer Translocation along Single-Stranded DNA
    • DOI 10.1016/j.molcel.2007.03.024, PII S1097276507002158
    • Tomko, E. J., Fischer, C. J., Niedziela-Majka, A., and Lohman, T. M. (2007) A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA Mol. Cell 26, 335-347 (Pubitemid 46687098)
    • (2007) Molecular Cell , vol.26 , Issue.3 , pp. 335-347
    • Tomko, E.J.1    Fischer, C.J.2    Niedziela-Majka, A.3    Lohman, T.M.4
  • 39
    • 20444440763 scopus 로고    scopus 로고
    • A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase
    • DOI 10.1038/nsmb920
    • Levin, M. K., Gurjar, M., and Patel, S. S. (2005) A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase Nat. Struct. Mol. Biol. 12, 429-435 (Pubitemid 43085903)
    • (2005) Nature Structural and Molecular Biology , vol.12 , Issue.5 , pp. 429-435
    • Levin, M.K.1    Gurjar, M.2    Patel, S.S.3


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