Discrimination of neutral oligosaccharides through a nanopore

Biochemical and Biophysical Research Communications

Volumn 412, Issue 4, 2011, Pages 561-564

  Bacri, Laurent ^a,b   Oukhaled, Abdelghani ^a,b   Hémon, Erven ^a,b   Bassafoula, Fenseth Banzouzi ^a,b   Auvray, Loïc ^a,b   Daniel, Régis ^a  

^a UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

^b UNIVERSITÉ PARIS DIDEROT   (France)

Author keywords

Hemolysin; Nanopore; Oligosaccharides; Single molecule; Translocation

Indexed keywords

ALPHA HEMOLYSIN; DEXTRAN; GLYCOSIDE; MALTOSE;

ARTICLE; CONFORMATION; DIFFUSION; MOLECULAR DYNAMICS; MOLECULAR WEIGHT; NANOPORE; POLYMERIZATION; PRIORITY JOURNAL;

BACTERIAL TOXINS; DEXTRANS; HEMOLYSIN PROTEINS; HYDROGEN-ION CONCENTRATION; LIPID BILAYERS; MALTOSE; NANOPORES; OLIGOSACCHARIDES;

EID: 80052628377     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2011.07.121     Document Type: Article

References (33)

1. Turnbull J., Powell A., Guimond S. Heparan sulfate: decoding a dynamic multifunctional cell regulator. Trends in Cell Biology 2001, 11:75-82.
2. Williams S.J., Davies G.J. Protein-carbohydrate interactions: learning lessons from nature. Trends in Biotechnology 2001, 19:356-362.
3. Bishop J.R., Schuksz M., Esko J.D. Heparan sulphate proteoglycans fine-tune mammalian physiology. Nature 2007, 446:1030-1037.
4. DeMarco M.L., Woods R.J. Structural glycobiology: a game of snakes and ladders. Glycobiology 2008, 18:426-440.
5. Wormald M., Petrescu A., Pao Y.-L., Glithero A., Elliott T., Dwek R. Conformational Studies of Oligosaccharides and Glycopeptides: Complementarity of NMR, X-ray Crystallography and molecular, modelling. Chemical Reviews 2002, 102:371-386.
6. Imberty A., Pérez S. Structure, conformation, and dynamics of bioactive oligosaccharides: theoretical approaches and experimental validations. Chemical Reviews 2000, 100:4567-4588.
7. Laine R.A. A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05×10(12) structures for a reducing hexasaccharide: the Isomer Barrier to development of single-method saccharide sequencing or synthesis systems. Glycobiology 1994, 4:759-767.
8. Mehta A.D., Rief M., Spudlich J.A., Smith D.A., Simmons R.M. Single-molecule biomechanics with optical methods. Science 1999, 238:1689-1695.
9. Ludwig M., Rief M., Schmidt L., Li H., Oesterhelt F., Gautel M. AFM, a tool for single-molecule experiments. Applied Physics Materials Science Process 1999, 68:173-176.
10. Bizzarri A.R., Cannistraro S. The application of atomic force spectroscopy to the study of biological complexes undergoing a biorecognition process. Chemical Society Reviews 2010, 39:734-749.
11. Gueroui Z., Place C., Freyssingeas E., Berge B. Observation by fluorescence microscopy of transcription on single combed DNA. Proceedings of the National Academy of Sciences of the United States of America 2002, 99:6005-6010.
12. Puchner E.M., Gaub H.E. Force and function: probing proteins with AFM-based force spectroscopy. Current Opinion in Structural Biology 2009, 19:605-614.
13. Marzalek P., Li H., Fernandez J. Fingerprinting polysaccharides with single-molecule atomic force microscopy. Nature Biotechnology 2001, 19:258-262.
14. Tissot B., Daniel R., Place C. Interaction of the C1 complex of Complement with sulfated polysaccharide and DNA probed by single molecule fluorescence microscopy. European Journal of Biochemistry 2003, 270:4714-4720.
15. Camesano T., Wilkinsoon K. Single molecule study of xanthan conformation using atomic force microscopy. Biomacromolecules 2001, 2:1184-1191.
16. Wang H., Branton D. Nanopores with a spark for single-molecule detection. Nature Biotechnology 2001, 19:622-623.
17. Kasianowicz J.J., Brandin E., Branton D., Deamer D.W. Characterization of individual polynucleotide molecules using a membrane channel. Proceedings of the National Academy of Sciences of the United States of America 1996, 93:13770-13773.
18. Song L., Hobaugh M.R., Shustak C., Cheley S., Bayley H., Gouaux J.E. Structure of staphylococcal alpha-hemolysin. A heptameric transmembrane pore. Science 1996, 274:1859-1866.
19. Movileanu L., Schmittschmitt J.P., Scholtz J.M., Bayley H. Interactions of peptides with a protein pore. Biophysical Journal 2005, 89:1030-1045.
20. Oukhaled G., Mathé J., Biance A.-L., Bacri L., Betton J.-M., Lairez D., Pelta J., Auvray L. Unfolding of proteins and long transient conformations detected by single nanopore recording. Physical Review Letters 2007, 98:1581011-1581014.
21. Deamer D.W., Branton D. Characterization of nucleic acids by nanopore analysis. Accounts of Chemical Research 2002, 35:817-825.
22. Movileanu L., Cheley S., Bayley H. Partitioning of individual flexible polymers into a nanoscopic protein pore. Biophysical Journal 2003, 85:897-910.
23. Kasianowicz J.J., Henrickson S.E., Weetall H.H., Robertson B. Simultaneous multianalyte detection with a nanometer-scale pore. Analytical Chemistry 2001, 73:2268-2272.
24. Meller A., Nivon L., Brandin E., Golovchenko J., Branton D. Rapid nanopore discrimination between single polynucleotide molecules. Proceedings of the National Academy of Sciences of the United States of America 2000, 97:1079-1084.
25. Heng J.B., Ho C., Kim T., Timp R., Aksimentiev A., Grinkova Y.V., Sligar S., Schulten K., Timp G. Sizing DNA using a nanometer-diameter pore. Biophysical Journal 2004, 87:2905-2911.
26. Rhee M., Burns M.A. Nanopore sequencing technology: nanopore preparations. Trends in Biotechnology 2007, 25:174-181.
27. Mueller P., Rudin D.O., Tien H.T., Wescott W.C. Methods for the formation of single bimolecular lipid membranes in aqueous solution. Journal of Physical Chemistry 1963, 67:534-535.
28. Brun L., Pastoriza-Gallego M., Oukhaled G., Mathé J., Bacri L., Auvray L., Pelta J. Dynamics of polyelectrolyte transport through a protein channel as a function of applied voltage. Physical Review Letters 2008, 100:158302.1-158302.4.
29. Pedone D., Firnkes M., Rant U. Data analysis of translocation events in nanopore experiments. Analytical Chemistry 2009, 81:9689-9694.
30. Armstrong J.K., Wenby R.B., Meiselman H.J., Fisher T.C. The hydrodynamic radii of macromolecules and their effect on red blood cell aggregation. Biophysical Journal 2004, 87:4259-4270.
31. Robertson J.W., Rodrigues C.G., Stanford V.M., Rubinson K.A., Krasilnikov O.V., Kasianowicz J.J. Single-molecule mass spectrometry in solution using a solitary nanopore. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:8207-8211.
32. Reiner J.E., Kasianowicz J.J., Nablo B.J., Robertson J.W.F. Theory for polymer analysis using nanopore-based single-molecule mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:12080-12085.
33. Zhao Q., de Zoysa R.S., Wang D., Jayawardhana D.A., Guan X. Real-time monitoring of peptide cleavage using a nanopore probe. Journal of the American Chemical Society 2009, 131:6324-6325.