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Volumn 103, Issue 4, 2011, Pages 779-794

Phylogeny and diversity of Japanese truffles (Tuber spp.) inferred from sequences of four nuclear loci

Author keywords

Asia; Biogeography; Ectomycorrhizal fungi; Evolution; Multilocus phylogeny; Species richness

Indexed keywords

ALLOPATRY; ECTOMYCORRHIZA; GENETIC MARKER; MIGRATION; MOLECULAR ANALYSIS; MORPHOLOGY; MUSHROOM; PHYLOGENY; PHYLOGEOGRAPHY; SAMPLING; SPECIATION (BIOLOGY); SPECIES DIVERSITY; SPECIES RICHNESS; TAXONOMY; TEMPERATE ENVIRONMENT;

EID: 80052551962     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/10-138     Document Type: Article
Times cited : (58)

References (49)
  • 1
    • 0032874849 scopus 로고    scopus 로고
    • Intercompatibility tests in the Hebeloma crustuliniforme complex in northwestern Europe
    • Aanen DK, Kuyper TW. 1999. Intercompatibility tests in the Hebeloma crustuliniforme complex in northwestern Europe. Mycologia 91:783-795.
    • (1999) Mycologia , vol.91 , pp. 783-795
    • Aanen, D.K.1    Kuyper, T.W.2
  • 2
    • 78650232434 scopus 로고    scopus 로고
    • North American truffles in the Tuberaceae: molecular and morphological perspectives
    • Bonito G, Trappe JM, Vilgalys R. 2009. North American truffles in the Tuberaceae: molecular and morphological perspectives. Acta Bot Yunnanica 16:39-51.
    • (2009) Acta Bot Yunnanica , vol.16 , pp. 39-51
    • Bonito, G.1    Trappe, J.M.2    Vilgalys, R.3
  • 3
    • 77956634672 scopus 로고    scopus 로고
    • Improved resolution of major clades within Tuber and taxonomy of species within Tuber gibbosum complex
    • Bonito G, Trappe JM, Rawlinson P, Vilgalys R. 2010. Improved resolution of major clades within Tuber and taxonomy of species within Tuber gibbosum complex. Mycologia 102:1042-1057.
    • (2010) Mycologia , vol.102 , pp. 1042-1057
    • Bonito, G.1    Trappe, J.M.2    Rawlinson, P.3    Vilgalys, R.4
  • 4
    • 58249124483 scopus 로고    scopus 로고
    • How to know unknown fungi: the role of a herbarium
    • Brock PM, Döring H, Bidartondo MI. 2009. How to know unknown fungi: the role of a herbarium. New Phytol 181:719-724.
    • (2009) New Phytol , vol.181 , pp. 719-724
    • Brock, P.M.1    Döring, H.2    Bidartondo, M.I.3
  • 5
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 6
    • 34548291316 scopus 로고    scopus 로고
    • Le specie europee del genere Tuber
    • Torino, Italy: Regione Piemonte, Museo Regionale di Scienze Naturali
    • Ceruti A, Fontana A, Nosenzo C. 2003. Le specie europee del genere Tuber. Una revisione storica. Torino, Italy: Regione Piemonte, Museo Regionale di Scienze Naturali.
    • (2003) Una revisione storica
    • Ceruti, A.1    Fontana, A.2    Nosenzo, C.3
  • 7
    • 47649123020 scopus 로고    scopus 로고
    • Notes on Tuber aestivum Vittad. (Tuberaceae, Ascomycota) from China
    • Chen J, Liu PG, Wang Y. 2005. Notes on Tuber aestivum Vittad. (Tuberaceae, Ascomycota) from China. Acta Bot Yunnanica 27:385-389.
    • (2005) Acta Bot Yunnanica , vol.27 , pp. 385-389
    • Chen, J.1    Liu, P.G.2    Wang, Y.3
  • 8
    • 47649105602 scopus 로고    scopus 로고
    • Two new records of Tuber (Pezizomycetes, Pezizales) from China
    • Chen J, Wang Y, Liu PG. 2008. Two new records of Tuber (Pezizomycetes, Pezizales) from China. Mycotaxon 104: 65-71.
    • (2008) Mycotaxon , vol.104 , pp. 6571
    • Chen, J.1    Wang, Y.2    Liu, P.G.3
  • 10
    • 33745128401 scopus 로고    scopus 로고
    • Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae)-phylogenetic tests of fossil-based hypotheses
    • Eckert AJ, Hall BD. 2006. Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae)-phylogenetic tests of fossil-based hypotheses. Mol Phylogenet Evol 40:166-182.
    • (2006) Mol Phylogenet Evol , vol.40 , pp. 166-182
    • Eckert, A.J.1    Hall, B.D.2
  • 12
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts
    • Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118.
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 13
    • 0024657679 scopus 로고
    • Phylogeny of some Fusarium species, as determined by large-subunit ribosomal-RNA sequence comparison
    • Guadet J, Julien J, Lafay JF, Brygoo Y. 1989. Phylogeny of some Fusarium species, as determined by large-subunit ribosomal-RNA sequence comparison. Mol Biol Evol 6: 227-242.
    • (1989) Mol Biol Evol , vol.6 , pp. 227-242
    • Guadet, J.1    Julien, J.2    Lafay, J.F.3    Brygoo, Y.4
  • 14
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 15
    • 33749667984 scopus 로고    scopus 로고
    • Tests of concepts of the small, white, European group of Tuber spp. based on morphology and rDNA ITS sequences with special reference to Tuber rapeaodorum
    • Halász K, Bratek Z, Szegó D, Rudnóy S, Rácz I, Lásztity D, Trappe JM. 2005. Tests of concepts of the small, white, European group of Tuber spp. based on morphology and rDNA ITS sequences with special reference to Tuber rapeaodorum. Mycol Prog 4:281-290.
    • (2005) Mycol Prog , vol.4 , pp. 281-290
    • Halász, K.1    Bratek, Z.2    Szegó, D.3    Rudnóy, S.4    Rácz, I.5    Lásztity, D.6    Trappe, J.M.7
  • 16
    • 64549147105 scopus 로고    scopus 로고
    • Phylogenetic study of two truffles, Tuber formosanum and Tuber furfuraceum, identified from Taiwan
    • Huang JY, Hu HT, Shen WC. 2009. Phylogenetic study of two truffles, Tuber formosanum and Tuber furfuraceum, identified from Taiwan. FEMS Microbiol Lett 294:157-171.
    • (2009) FEMS Microbiol Lett , vol.294 , pp. 157-171
    • Huang, J.Y.1    Hu, H.T.2    Shen, W.C.3
  • 17
    • 42149135515 scopus 로고    scopus 로고
    • Molecular phylogeny and historical biogeography of the genus Tuber, the "true truffles"
    • Jeandroz S, Murat C, Wang Y, Bonfante P, Le Tacon F. 2008. Molecular phylogeny and historical biogeography of the genus Tuber, the "true truffles". J Biogeogr 35:815-829.
    • (2008) J Biogeogr , vol.35 , pp. 815-829
    • Jeandroz, S.1    Murat, C.2    Wang, Y.3    Bonfante, P.4    Le Tacon, F.5
  • 18
    • 34548227329 scopus 로고    scopus 로고
    • Identification of internal transcribed spacer sequence motifs in truffles: a first step toward their DNA bar cording
    • Karkouri KE, Murat C, Zampieri E, Bonfante P. 2007. Identification of internal transcribed spacer sequence motifs in truffles: a first step toward their DNA bar cording. Appl Environ Microbiol 73:5320-5330.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5320-5330
    • Karkouri, K.E.1    Murat, C.2    Zampieri, E.3    Bonfante, P.4
  • 19
    • 0010252020 scopus 로고    scopus 로고
    • Paleogeography of the Rykyu Islands
    • Kimura M. 2000. Paleogeography of the Rykyu Islands. Tropics 10:5-24.
    • (2000) Tropics , vol.10 , pp. 5-24
    • Kimura, M.1
  • 21
    • 36048935108 scopus 로고    scopus 로고
    • Truffle trouble: What happened to the Tuberales?
    • Loessøe T, Hansen K. 2007. Truffle trouble: What happened to the Tuberales? Mycol Res 111:1075-1099.
    • (2007) Mycol Res , vol.111 , pp. 1075-1099
    • Loessøe, T.1    Hansen, K.2
  • 22
    • 0027501322 scopus 로고
    • DNA probes for identification of the ectomycorrhizal fungus Tuber magnatum Pico
    • Lanfranco L, Wyss C, Marzachi C, Bonfante P. 1993. DNA probes for identification of the ectomycorrhizal fungus Tuber magnatum Pico. FEMS Microbiol Lett 114:245-252.
    • (1993) FEMS Microbiol Lett , vol.114 , pp. 245-252
    • Lanfranco, L.1    Wyss, C.2    Marzachi, C.3    Bonfante, P.4
  • 23
    • 0007170750 scopus 로고
    • New species and new records of hypogeous fungi from China I
    • Liu B. 1985. New species and new records of hypogeous fungi from China I. Acta Mycol Sin 4:84-89.
    • (1985) Acta Mycol Sin , vol.4 , pp. 84-89
    • Liu, B.1
  • 24
    • 0032750944 scopus 로고    scopus 로고
    • Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit
    • Liu JL, Whelen S, Hall BD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799-1808.
    • (1999) Mol Biol Evol , vol.16 , pp. 1799-1808
    • Liu, J.L.1    Whelen, S.2    Hall, B.D.3
  • 26
    • 14144255880 scopus 로고    scopus 로고
    • Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)
    • Matheny PB. 2005. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Mol Phyl Evol 35:1-20.
    • (2005) Mol Phyl Evol , vol.35 , pp. 1-20
    • Matheny, P.B.1
  • 27
    • 33244480108 scopus 로고    scopus 로고
    • Phylogeny of the ectomycorrhizal mushroom genus Alnicola (Basidiomycota, Cortnariaceae) based on rDNA sequences with special emphasis on host specificity and morphological characters
    • Moreau P-A, Peintner U, Gardes M. 2006. Phylogeny of the ectomycorrhizal mushroom genus Alnicola (Basidiomycota, Cortnariaceae) based on rDNA sequences with special emphasis on host specificity and morphological characters. Mol Phylogenet Evol 38:794-807.
    • (2006) Mol Phylogenet Evol , vol.38 , pp. 794-807
    • Moreau, P.-A.1    Peintner, U.2    Gardes, M.3
  • 28
    • 0042967761 scopus 로고    scopus 로고
    • Underground primary succession of ectomycorrhizal fungi in a volcanic desert on Mount Fuji
    • Nara K, Nakaya H, Wu B, Zhou Z, Hogetsu T. 2003. Underground primary succession of ectomycorrhizal fungi in a volcanic desert on Mount Fuji. New Phytol 159:743-756.
    • (2003) New Phytol , vol.159 , pp. 743-756
    • Nara, K.1    Nakaya, H.2    Wu, B.3    Zhou, Z.4    Hogetsu, T.5
  • 29
    • 45749142504 scopus 로고    scopus 로고
    • Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification
    • Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson K-H. 2008. Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinform 4:193-201.
    • (2008) Evol Bioinform , vol.4 , pp. 193-201
    • Nilsson, R.H.1    Kristiansson, E.2    Ryberg, M.3    Hallenberg, N.4    Larsson, K.-H.5
  • 30
    • 20444386770 scopus 로고    scopus 로고
    • Version 2. Uppsala, Sweden: Evolutionary Biology Centre: Program distributed by the author
    • Nylander JAA. 2004. MrModeltest. Version 2. Uppsala, Sweden: Evolutionary Biology Centre: Program distributed by the author.
    • (2004) MrModeltest
    • Nylander, J.A.A.1
  • 31
    • 0002991198 scopus 로고    scopus 로고
    • Tuber
    • Cairney JWG, Chambers SM eds., Key genera in profile. New York: Springer
    • Pacioni G, Comandini O. 1999. Tuber. In: Cairney JWG, Chambers SM, eds. Ectomycorrhizal fungi. Key genera in profile. New York: Springer. p 163-186.
    • (1999) Ectomycorrhizal fungi , pp. 163-186
    • Pacioni, G.1    Comandini, O.2
  • 34
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574, doi:10.1093/bioinformatics/btg180
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 35
    • 43349098302 scopus 로고    scopus 로고
    • Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)
    • Ryberg M, Nilsson RH, Kristiansson E, Töpel M, Jacobsson S, Larsson E. 2008. Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota). BMC Evol Biol 8:50-64.
    • (2008) BMC Evol Biol , vol.8 , pp. 50-64
    • Ryberg, M.1    Nilsson, R.H.2    Kristiansson, E.3    Töpel, M.4    Jacobsson, S.5    Larsson, E.6
  • 36
    • 35348971389 scopus 로고    scopus 로고
    • Cryptic species and host specificity in the ectomycorrhizal genus Strobilomyces (Strobilomycetaceae)
    • Sato H, Yumoto T, Murakami N. 2007. Cryptic species and host specificity in the ectomycorrhizal genus Strobilomyces (Strobilomycetaceae). Am J Bot 94:1630-1641.
    • (2007) Am J Bot , vol.94 , pp. 1630-1641
    • Sato, H.1    Yumoto, T.2    Murakami, N.3
  • 37
    • 34347334174 scopus 로고    scopus 로고
    • A multigene phylogeny of Clavicipitaceae (Ascomycota, Fungi): identification of localized incongruence using a combinational bootstrap approach
    • Sung G-H, Sung J-M, Hywel-Jones NL, Spatafora JW. 2007. A multigene phylogeny of Clavicipitaceae (Ascomycota, Fungi): identification of localized incongruence using a combinational bootstrap approach. Mol Phylogenet Evol 44:1204-1223.
    • (2007) Mol Phylogenet Evol , vol.44 , pp. 1204-1223
    • Sung, G.-H.1    Sung, J.-M.2    Hywel-Jones, N.L.3    Spatafora, J.W.4
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis software
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis software. Mol Biol Evol 24:1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 33751213586 scopus 로고    scopus 로고
    • Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi
    • Taylor JW, Turner E, Jeffrey P, Townsend JP, Dettman JR, Jacobson D. 2006. Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi. Phil Trans Roy Soc B 361: 1947-1963.
    • (2006) Phil Trans Roy Soc B , vol.361 , pp. 1947-1963
    • Taylor, J.W.1    Turner, E.2    Jeffrey, P.3    Townsend, J.P.4    Dettman, J.R.5    Jacobson, D.6
  • 40
    • 52649138494 scopus 로고    scopus 로고
    • Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers
    • Tedersoo L, Jairus T, Horton BM, Abarenkov K, Suvi T, Saar I, Kjøller R. 2008. Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers. New Phytol 180:479-490.
    • (2008) New Phytol , vol.180 , pp. 479-490
    • Tedersoo, L.1    Jairus, T.2    Horton, B.M.3    Abarenkov, K.4    Suvi, T.5    Saar, I.6    Kjøller, R.7
  • 41
    • 0003331568 scopus 로고
    • Notes on Japanese hypogeous ascomycetes
    • Trappe JM. 1976. Notes on Japanese hypogeous ascomycetes. Trans Mycol Soc Japan 17:209-217.
    • (1976) Trans Mycol Soc Japan , vol.17 , pp. 209-217
    • Trappe, J.M.1
  • 42
    • 0141795524 scopus 로고    scopus 로고
    • Taxonomic misidentification in public DNA databases
    • Vilgalys R. 2003. Taxonomic misidentification in public DNA databases. New Phytol 160:4-5.
    • (2003) New Phytol , vol.160 , pp. 4-5
    • Vilgalys, R.1
  • 43
    • 0025374564 scopus 로고
    • Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species
    • Vilgalys R., Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
    • (1990) J Bacteriol , vol.172 , pp. 4238-4246
    • Vilgalys, R.1    Hester, M.2
  • 44
    • 0036663357 scopus 로고    scopus 로고
    • Tuber huidongense sp. nov. from China
    • Wang Y, He XY. 2002. Tuber huidongense sp. nov. from China. Mycotaxon 83:191-194.
    • (2002) Mycotaxon , vol.83 , pp. 191-194
    • Wang, Y.1    He, X.Y.2
  • 45
    • 59549099874 scopus 로고    scopus 로고
    • Paradoxa gigantospora comb. nov. from China
    • Wang Y, Hu H-T. 2008. Paradoxa gigantospora comb. nov. from China. Mycotaxon 106:199-202.
    • (2008) Mycotaxon , vol.106 , pp. 199-202
    • Wang, Y.1    Hu, H.-T.2
  • 46
    • 38149086808 scopus 로고    scopus 로고
    • Molecular taxonomy of Chinese truffles belonging to the Tuber rufum and Tuber puberulum groups
    • Wang YJ, Tan ZM, Murat C, Jeandroz S, Le Tacon F. 2007. Molecular taxonomy of Chinese truffles belonging to the Tuber rufum and Tuber puberulum groups. Fungal Divers 24:301-328.
    • (2007) Fungal Divers , vol.24 , pp. 301-328
    • Wang, Y.J.1    Tan, Z.M.2    Murat, C.3    Jeandroz, S.4    Le Tacon, F.5
  • 47
    • 33744825198 scopus 로고    scopus 로고
    • Phylogenetic relationships between Tuber pseudoexcavatum, a Chinese truffle, and other Tuber species based on parsimony and distance analysis of four different gene sequences
    • Wang YJ, Tan ZM, Zhang DC, Murat C, Jeandroz S, Le Tacon F. 2006a. Phylogenetic relationships between Tuber pseudoexcavatum, a Chinese truffle, and other Tuber species based on parsimony and distance analysis of four different gene sequences. FEMS Microbiol Lett 259:269-281.
    • (2006) FEMS Microbiol Lett , vol.259 , pp. 269-281
    • Wang, Y.J.1    Tan, Z.M.2    Zhang, D.C.3    Murat, C.4    Jeandroz, S.5    Le Tacon, F.6
  • 49
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds., New York: Academic Press
    • White TJ, Bruns TD, Lee SS, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315-322.
    • (1990) PCR protocols: a guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.D.2    Lee, S.S.3    Taylor, J.4


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