Phylogenetic relationships between Tuber pseudoexcavatum, a Chinese truffle, and other Tuber species based on parsimony and distance analysis of four different gene sequences

FEMS Microbiology Letters

Volumn 259, Issue 2, 2006, Pages 269-281

  Wang, Yongjin ^a   Tan, Zhu Ming ^b   Zhang, Da Cheng ^c   Murat, Claude ^d   Jeandroz, Sylvain ^a   Le Tacon, François ^a  

^a UNIVERSITÉ DE LORRAINE   (France)

^b HUNAN ACADEMY OF FORESTRY   (China)

^c Committee of Science and Technology of Huidong County ^*  (China)

^d UNIVERSITY OF TURIN   (Italy)

Author keywords

tubulin; Biogeography; EF 1 gene; ITS; Phylogeny; Protein kinase C; Tuber

Indexed keywords

BETA TUBULIN; ELONGATION FACTOR 1ALPHA; PROTEIN KINASE C;

ARTICLE; CHINA; CONTROLLED STUDY; EUROPE; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENY; PRIORITY JOURNAL; TUBER (GENUS); TUBER BRUMALE; TUBER HIMALAYENSE; TUBER INDICUM; TUBER MELANOSPORUM; TUBER PSEUDOEXCAVATUM; TUBER SINENSE; UNINDEXED SEQUENCE;

ASCOMYCOTA; BASE SEQUENCE; CHINA; DNA PRIMERS; DNA, FUNGAL; DNA, INTERGENIC; EUROPE; FUNGAL PROTEINS; GENES, FUNGAL; MICROSCOPY, ELECTRON, SCANNING; PEPTIDE ELONGATION FACTOR 1; PHYLOGENY; PROTEIN KINASE C; SEQUENCE ALIGNMENT; SPECIES SPECIFICITY; SPORES, FUNGAL; TUBULIN;

TUBER (TRUFFLE); TUBER BRUMALE; TUBER HIMALAYENSE; TUBER INDICUM; TUBER MELANOSPORUM; TUBER PSEUDOEXCAVATUM;

EID: 33744825198     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00283.x     Document Type: Article

References (28)

1. Ambra R Macino G 2000 Cloning and characterization of PKC-homologous genes in the truffle species Tuber borchii and Tubermagnatum. FEMS Microbiol Lett 189: 45 53.
2. Bertault G, Raymond M, Berthomieu A, Callot G Fernandez D 1998 Trifling variation in truffles. Nature 394: 734.
3. Bertault G, Rousset F, Fernandez D, Berthomieu A, Hochberg ME, Callot G Raymond M 2001 Population genetics and dynamics of the black truffle in a man-made truffle field. Heredity 86: 451 458.
4. Bougher NL Lebel T 2001 Sequestrate (truffle-like) fungi of Australia and New Zealand. Aust Syst Bot 14: 439 484.
5. Ceruti A, Fontana A Nosenzo C 2003 Le specie europee del genere Tuber, una revisione storica, Museo Regionale di Scienze Naturali, monografie XXXVII.
6. Cooke MC Massee G 1892 Himalayan truffles. Grevillea 20: 67.
7. Gandeboeuf D, Dupré C, Roeckel-Drevet P, Nicolas P Chevalier G 1997 Grouping and identification of Tuber species using RAPD markers. Can J Bot 75: 36 45.
8. Glass NL Donaldson GC 1995 Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Appl Environ Microbiol 61: 1323 1330.
9. Hall TA 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95 98.
10. Hawksworth DL, Kirk PM, Sutton BC Pegler DN 1995 Ainsworth & Bisby's Dictionary of the Fungi, CAB International, Wallingford, Oxon, UK.
11. Henrion B, Chevalier G Martin F 1994 Typing truffle species by PCR amplification of the ribosomal DNA spacers. Mycol Res 98: 37 43.
12. Janex-Favre MC Pargney-Leduc A 1976 La formation des ascospores chez deux truffes: Tuber rufum Pico et Tuber aestivum Vitt. (Tubéracées). C R Acad Sci Ser D 283: 1173 1175.
13. Kumar S, Tamura K, Jakobsen IB Nei M 2001 MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244 1245.
14. Mabru D, Dupré C, Douet JP, Leroy P, Ravel C, Ricard JM, Médina B, Castroviejo M Chevalier G 2001 Rapid molecular typing method for the reliable detection of Asiatic black truffle (Tuber indicum) in commercialized products: fruiting bodies and mycorrhizal seedlings. Mycorrhiza 11: 89 94.
15. Mabru D, Douet JP, Mouton A, Dupré C, Ricard JM, Medina B, Castroviejo M Chevalier G 2004 PCR-RFLP using a SNP on the mitochondrial Lsu-rDNA as an easy method to differentiate Tuber melanosporum (Perigord truffle) and other truffle species in cans. Int J Food Microbiol 94: 33 42.
16. Malençon MG 1938 Les truffes européennes. Rev Mycol 3: 1 92.
17. Mello A, Cantisani A, Vizzini A Bonfante P 2002 Genetic variability of Tuber uncinatum and its relatedness to other black truffles. Environ Microbiol 4: 584 594.
18. Mello A, Murat C, Vizzini A, Gavazza V Bonfante P 2005 Tuber magnatum Pico, a species of limited geographical distribution: its genetic diversity inside and outside a truffle ground. Environ Microbiol 7: 55 65.
19. Murat C, Díez J, Luis P, Delaruelle C, Dupré C, Chevali G, Bonfante P Martin F 2004 Polymorphism at the ribosomal DNA ITS and its relation to postglacial re-colonization routes of the Perigord truffle Tuber melanosporum. New Phytol 164: 401 412.
20. Paolocci F, Rubini A, Riccioni C, Topini F Arcioni S 2004 Tuber aestivum and Tuber uncinatum: two morphotypes or two species? FEMS Microbiol Lett 235: 109 115.
21. Pargney-Leduc A, Janex-Favre MC Montant C 1987 Formation et évolution des ascospores de Tuber melanosporum (truffe noire du Périgord, Discomycètes). Can J Bot 65: 1491 1503.
22. Riousset G, Riousset L, Chevalier G Bardet M-C 2001 Truffe d'Europe et de Chine, INRA, Paris.
23. Roux C, Sejalon-Delmas N, Martins M, Parguey-Leduc A, Dargent R Becard G 1999 Phylogenetic relationships between European and Chinese truffles based on parsimony and distance analysis of ITS sequences. FEMS Microbiol Lett 180: 147 155.
24. Rubini A, Topini F, Riccioni C, Paolocci F Arcioni S 2004 Isolation and characterization of polymorphic microsatellite loci in white truffle. Mol Ecol Notes 4: 116 118.
25. Thompson JD, Higgins DG Gibson TJ 1994 Clustal W: improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673 4680.
26. Wang Y, Moreno G, Riousset LJ, Manjon JL, Riousset G, Fourre G, Di Massimo G, Garcia-Montero LG Diez J 1998 Tuber pseudoexcavatum sp. nov. A new species from China commercialised in Spain, France and Italy with additional comments on Chinese truffles. Cryptogamie Mycol 19: 113 120.
27. White TJ, Bruns T, Lee S Taylor J 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols. A Guide to Methods and Applications Gelfand MA, Sninsky DH White TJ, eds), pp. 315 322. Academic Press, San Diego, CA.
28. Zhang L, Yang ZL Song DS 2005 A phylogenetic study of commercial Chinese truffles and their allies: taxonomic implications. FEMS Microbiol Lett 245: 85 92.