Phylogenetic and populational study of the Tuber indicum complex

Mycological Research

Volumn 110, Issue 9, 2006, Pages 1034-1045

  WANG, Yongjin ^a   TAN, Zhu Ming ^b   ZHANG, Da Cheng ^c   MURAT, Claude ^d   JEANDROZ, Sylvain ^a   LE TACON, François ^a  

^a UNIVERSITÉ DE LORRAINE   (France)

^b HUNAN ACADEMY OF FORESTRY   (China)

^c Committee of Science and Technology of Hui Dong County ^*  (China)

^d UNIVERSITY OF TURIN   (Italy)

Author keywords

Ascomycota; Pezizales; Taxonomy; Truffles

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA; TUBULIN;

FUNGUS; GENETIC STRUCTURE; PHYLOGENETICS; PHYLOGEOGRAPHY; POPULATION ESTIMATION; SCANNING ELECTRON MICROSCOPY; TAXONOMY;

ARTICLE; ASCOMYCETES; CHINA; CLASSIFICATION; FUNGUS SPORE; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGICAL EXAMINATION; PHYLOGENY; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SCANNING ELECTRON MICROSCOPY; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE; ULTRASTRUCTURE;

ASCOMYCOTA; CHINA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; GENETIC VARIATION; MICROSCOPY, ELECTRON, SCANNING; MYCOLOGICAL TYPING TECHNIQUES; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SPECIES SPECIFICITY; SPORES, FUNGAL; TUBULIN; VARIATION (GENETICS);

ASIA; CHINA; EURASIA; FAR EAST;

ASCOMYCOTA; PERIDIUM; PEZIZALES; TUBER (TRUFFLE); TUBER HIMALAYENSE; TUBER INDICUM;

EID: 33748742818     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2006.06.013     Document Type: Article

References (21)

1. Casgrain P., and Legendre P. The R package for multivariate and spatial analysis, Version 4.0d3 - User's Manual (2001). http://www.fausmontreal.ca/BIO/legendre/
2. Ceruti A. Elaphomycetales et Tuberales. [Iconographia Mycologia N° 28] (1960), Comitato Onoranze Brezadoliane, Trento
3. Cooke M.C., and Massee G. Himalayan truffles. Grevillea 20 (1892) 67
4. Glass N.L., and Donaldson G.C. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Applied Environmental Microbiology 61 (1995) 1323-1330
5. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41 (1999) 95-98
6. Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17 (2001) 1244-1245
7. Miller M.P. Tools For Population Genetic Analyses (TFPGA) 1.3: a windows program for the analysis of allozymes and molecular population genetic data (1997). http://www.marksgeneticsoftware.net/
8. Moreno G., Manjòn J.L., Diez J., Garcia-Montero L.G., and Di Massimo G. Tuber pseudohimalayense sp. nov. An Asiatic species commercialized in Spain, similar to the 'Perigord' truffle. Mycotaxon 63 (1997) 217-224
9. Murat C., Diez J., Luis P., Delaruelle C., Dupré C., Chevalier G., Bonfante P., and Martin F. Polymorphism at the ribosomal DNA ITS and its relation to postglacial re-colonization routes of the Perigord truffle Tuber melanosporum. New Phytologist 164 (2004) 401-411
10. Paolocci F., Rubini A., Granetti B., and Arcioni S. Typing Tuber melanosporum and Chinese black truffles by molecular markers. FMES Microbiology Letters 153 (1997) 255-260
11. Pons O., and Petit R.J. Measuring and testing genetic differentiation which ordered versus unordered alleles. Genetics 144 (1996) 1237-1245
12. Roux C., Sejalon-Delmas N., Martins M., Parguey-Leduc A., Dargent R., and Bécard G. Phylogenetic relationships between European and Chinese truffles based on parsimony and distance analysis of ITS sequences. FEMS Microbiology Letters 180 (1999) 147-155
13. Rubini A., Paolocci F., Riccioni C., Vendramin G., and Arcioni S. Genetic and phylogeographic structures of the symbiotic fungus Tuber magnatum. Applied Environmental Microbiology 71 (2005) 6584-6589
14. Tao K., Liu B., and Zhang D.C. A new species of the genus Tuber from China. Journal of Shanxi University 12 (1989) 215-218 (National Science Edition)
15. Thompson J.D., Higgins D.G., and Gibson T.J. Clustal W: improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
16. White T.J., Bruns T., Lee S., and Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Gelfand M.A., Sninsky D.H., and White T.J. (Eds). PCR Protocols: A Guide to Methods and Applications (1990), Academic Press, San Diego 315-322
17. Wang Y., Tan Z.M., Zhang D.C., Murat C., Jeandroz S., and Le Tacon F. Phylogenetic relationships between Tuber pseudoexcavatum, a Chinese truffle, and other Tuberspecies based on parsimony and distance analysis of four different gene sequences. FEMS Microbiology Letters 259 (2006) 269-281
18. Yu G., Prentice I.C., Harrison S.P., and Sun X.J. Pollen-based biome reconstructions for China at 0 and 6000 years. Journal of Biogeography 25 (1998) 1055-1069
19. Yu G., Chen X., Ni J., Cheddadi R., Guiot J., Han H., Harrison S.P., Huang C., Ke M., Kong Z., Li S., Li W., Liew P., Liu G., Liu J., Liu Q., Liu K.-B., Prentice I.C., Qui W., Ren G., Song C., Sugita S., Sun X., Tang L., van Campo E., Xia Y., Xu Q., Yan S., Yang X., Zhao J., and Zheng Z. Palaeovegetation of China: a pollen data-based synthesis for the mid-Holocene and last glacial maximum. Journal of Biogeography 27 (2000) 635-664
20. Zhang B.C., and Minter D.W. Tuber himalayense sp. nov. with notes on Himalayan truffles. Transactions of the British Mycological Society 91 (1988) 593-597
21. Zhang L., Yang Z.L., and Song D.S. A phylogenetic study of commercial Chinese truffles and their allies: taxonomic implications. FEMS Microbiology Letters 245 (2005) 85-92