Expression of micrornas in the stem cell niche of the adult mouse incisor

PLoS ONE

Volumn 6, Issue 9, 2011, Pages

  Jheon, Andrew H ^a   Li, Chun Ying ^a   Wen, Timothy ^a   Michon, Frederic ^b   Klein, Ophir D ^a,c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF HELSINKI   (Finland)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT ANIMAL; AMELOBLAST; ANIMAL TISSUE; ARTICLE; CELL DIFFERENTIATION; CELL MIGRATION; CELL RENEWAL; CONTROLLED STUDY; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE IDENTIFICATION; GENE LOCATION; GENE TARGETING; IN SITU HYBRIDIZATION; INCISOR; MICROARRAY ANALYSIS; MICRORNA GENE; MIR 138 GENE; MIR 31 GENE; MOLECULAR DYNAMICS; MOUSE; NONHUMAN; PREDICTION; PROGENY; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SIGNAL TRANSDUCTION; STEM CELL NICHE; TOOTH DEVELOPMENT; TRANSCRIPTION REGULATION; ANIMAL; CYTOLOGY; DNA MICROARRAY; MALE; METABOLISM; STEM CELL; TRANSGENIC MOUSE;

ANIMALIA;

GREEN FLUORESCENT PROTEIN; MICRORNA;

AMELOBLASTS; ANIMALS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GREEN FLUORESCENT PROTEINS; INCISOR; MALE; MICE; MICE, TRANSGENIC; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; STEM CELLS;

EID: 80052530510     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0024536     Document Type: Article

References (53)

1. Harada H, Kettunen P, Jung HS, Mustonen T, Wang YA, et al. (1999) Localization of putative stem cells in dental epithelium and their association with Notch and FGF signaling. J Cell Biol 147: 105-120.
2. Seidel K, Ahn CP, Lyons D, Nee A, Ting K, et al. (2010) Hedgehog signaling regulates the generation of ameloblast progenitors in the continuously growing mouse incisor. Development 137: 3753-3761.
3. Klein OD, Lyons DB, Balooch G, Marshall GW, Basson MA, et al. (2008) An FGF signaling loop sustains the generation of differentiated progeny from stem cells in mouse incisors. Development 135: 377-385.
4. Wang XP, Suomalainen M, Felszeghy S, Zelarayan LC, Alonso MT, et al. (2007) An integrated gene regulatory network controls stem cell proliferation in teeth. PLoS Biol 5: e159.
5. Tummers M, Thesleff I, (2009) The importance of signal pathway modulation in all aspects of tooth development. J Exp Zool B Mol Dev Evol 312B: 309-319.
6. Klein OD, Minowada G, Peterkova R, Kangas A, Yu BD, et al. (2006) Sprouty genes control diastema tooth development via bidirectional antagonism of epithelial-mesenchymal FGF signaling. Dev Cell 11: 181-190.
7. Jarvinen E, Salazar-Ciudad I, Birchmeier W, Taketo MM, Jernvall J, et al. (2006) Continuous tooth generation in mouse is induced by activated epithelial Wnt/beta-catenin signaling. Proc Natl Acad Sci U S A 103: 18627-18632.
8. Kassai Y, Munne P, Hotta Y, Penttila E, Kavanagh K, et al. (2005) Regulation of mammalian tooth cusp patterning by ectodin. Science 309: 2067-2070.
9. Munne PM, Felszeghy S, Jussila M, Suomalainen M, Thesleff I, et al. (2010) Splitting placodes: effects of bone morphogenetic protein and Activin on the patterning and identity of mouse incisors. Evol Dev 12: 383-392.
10. Munne PM, Tummers M, Jarvinen E, Thesleff I, Jernvall J, (2009) Tinkering with the inductive mesenchyme: Sostdc1 uncovers the role of dental mesenchyme in limiting tooth induction. Development 136: 393-402.
11. Pirvola U, Spencer-Dene B, Xing-Qun L, Kettunen P, Thesleff I, et al. (2000) FGF/FGFR-2(IIIb) signaling is essential for inner ear morphogenesis. J Neurosci 20: 6125-6134.
12. Wang XP, Suomalainen M, Jorgez CJ, Matzuk MM, Wankell M, et al. (2004) Modulation of activin/bone morphogenetic protein signaling by follistatin is required for the morphogenesis of mouse molar teeth. Dev Dyn 231: 98-108.
13. Wang XP, Suomalainen M, Jorgez CJ, Matzuk MM, Werner S, et al. (2004) Follistatin regulates enamel patterning in mouse incisors by asymmetrically inhibiting BMP signaling and ameloblast differentiation. Dev Cell 7: 719-730.
14. Lewis MA, Steel KP, (2010) MicroRNAs in mouse development and disease. Semin Cell Dev Biol 21: 774-780.
15. Park CY, Choi YS, McManus MT, (2010) Analysis of microRNA knockouts in mice. Hum Mol Genet 19: R169-175.
16. Michon F, (2011) Tooth evolution and dental defects: From genetic regulation network to micro-RNA fine-tuning. Birth Defects Res A Clin Mol Teratol.
17. Fabian MR, Sonenberg N, Filipowicz W, (2010) Regulation of mRNA translation and stability by microRNAs. Annu Rev Biochem 79: 351-379.
18. Winter J, Jung S, Keller S, Gregory RI, Diederichs S, (2009) Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat Cell Biol 11: 228-234.
19. Chekulaeva M, Filipowicz W, (2009) Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells. Curr Opin Cell Biol 21: 452-460.
20. Eulalio A, Huntzinger E, Izaurralde E, (2008) Getting to the root of miRNA-mediated gene silencing. Cell 132: 9-14.
21. Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
22. Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, et al. (2010) Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev 24: 992-1009.
23. Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
24. Han J, Lee Y, Yeom KH, Nam JW, Heo I, et al. (2006) Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 125: 887-901.
25. Lee Y, Ahn C, Han J, Choi H, Kim J, et al. (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425: 415-419.
26. Lund E, Guttinger S, Calado A, Dahlberg JE, Kutay U, (2004) Nuclear export of microRNA precursors. Science 303: 95-98.
27. Yi R, Qin Y, Macara IG, Cullen BR, (2003) Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev 17: 3011-3016.
28. Doi N, Zenno S, Ueda R, Ohki-Hamazaki H, Ui-Tei K, et al. (2003) Short-interfering-RNA-mediated gene silencing in mammalian cells requires Dicer and eIF2C translation initiation factors. Curr Biol 13: 41-46.
29. Lund E, Dahlberg JE, (2006) Substrate selectivity of exportin 5 and Dicer in the biogenesis of microRNAs. Cold Spring Harb Symp Quant Biol 71: 59-66.
30. Yi R, O'Carroll D, Pasolli HA, Zhang Z, Dietrich FS, et al. (2006) Morphogenesis in skin is governed by discrete sets of differentially expressed microRNAs. Nat Genet 38: 356-362.
31. Yi R, Poy MN, Stoffel M, Fuchs E, (2008) A skin microRNA promotes differentiation by repressing 'stemness'. Nature 452: 225-229.
32. Andl T, Murchison EP, Liu F, Zhang Y, Yunta-Gonzalez M, et al. (2006) The miRNA-processing enzyme dicer is essential for the morphogenesis and maintenance of hair follicles. Curr Biol 16: 1041-1049.
33. Cao H, Wang J, Li X, Florez S, Huang Z, et al. (2010) MicroRNAs play a critical role in tooth development. J Dent Res 89: 779-784.
34. Jevnaker AM, Osmundsen H, (2008) MicroRNA expression profiling of the developing murine molar tooth germ and the developing murine submandibular salivary gland. Arch Oral Biol 53: 629-645.
35. Michon F, Tummers M, Kyyronen M, Frilander MJ, Thesleff I, (2010) Tooth morphogenesis and ameloblast differentiation are regulated by micro-RNAs. Dev Biol 340: 355-368.
36. Huang X, Xu S, Gao J, Liu F, Yue J, et al. (2011) miRNA expression profiling identifies DSPP regulators in cultured dental pulp cells. Int J Mol Med.
37. Harada H, Toyono T, Toyoshima K, Ohuchi H, (2002) FGF10 maintains stem cell population during mouse incisor development. Connect Tissue Res 43: 201-204.
38. Harada H, Toyono T, Toyoshima K, Yamasaki M, Itoh N, et al. (2002) FGF10 maintains stem cell compartment in developing mouse incisors. Development 129: 1533-1541.
39. Hu JC, Chun YH, Al Hazzazzi T, Simmer JP, (2007) Enamel formation and amelogenesis imperfecta. Cells Tissues Organs 186: 78-85.
40. Stephanopoulos G, Garefalaki ME, Lyroudia K, (2005) Genes and related proteins involved in amelogenesis imperfecta. J Dent Res 84: 1117-1126.
41. Yi R, Fuchs E, (2011) MicroRNAs and their roles in mammalian stem cells. J Cell Sci 124: 1775-1783.
42. Mardaryev AN, Ahmed MI, Vlahov NV, Fessing MY, Gill JH, et al. (2010) Micro-RNA-31 controls hair cycle-associated changes in gene expression programs of the skin and hair follicle. FASEB J 24: 3869-3881.
43. Mitsiadis TA, Barrandon O, Rochat A, Barrandon Y, De Bari C, (2007) Stem cell niches in mammals. Exp Cell Res 313: 3377-3385.
44. Kettunen P, Laurikkala J, Itaranta P, Vainio S, Itoh N, et al. (2000) Associations of FGF-3 and FGF-10 with signaling networks regulating tooth morphogenesis. Dev Dyn 219: 322-332.
45. Morton SU, Scherz PJ, Cordes KR, Ivey KN, Stainier DY, et al. (2008) microRNA-138 modulates cardiac patterning during embryonic development. Proc Natl Acad Sci U S A 105: 17830-17835.
46. Ma I, Allan AL, (2011) The role of human aldehyde dehydrogenase in normal and cancer stem cells. Stem Cell Rev 7: 292-306.
47. Jiang BZ, Yokohama-Tamaki T, Wang ZL, Obara N, Shibata S, (2010) Expression, localisation and synthesis of versican by the enamel organ of developing mouse molar tooth germ: an in vivo and in vitro study. Arch Oral Biol 55: 995-1006.
48. Yang JS, Phillips MD, Betel D, Mu P, Ventura A, et al. (2011) Widespread regulatory activity of vertebrate microRNA* species. RNA 17: 312-326.
49. Huelsken J, Vogel R, Erdmann B, Cotsarelis G, Birchmeier W, (2001) beta-Catenin controls hair follicle morphogenesis and stem cell differentiation in the skin. Cell 105: 533-545.
50. Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
51. Holm S, (1979) A simple sequentially rejective multiple test procedure. Scand J Stats 6: 65-70.
52. Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
53. Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.