Hindered diffusion in polymeric solutions studied by fluorescence correlation spectroscopy

Biophysical Journal

Volumn 101, Issue 1, 2011, Pages 255-264

  Zustiak, Silviya P ^a   Nossal, Ralph ^a   Sackett, Dan L ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEXTRAN; RIBONUCLEASE; SUCCINIC ACID;

ANIMAL; ARTICLE; CATTLE; CHEMISTRY; DIFFUSION; METABOLISM; METHODOLOGY; OSMOLARITY; PROTEIN BINDING; REPRODUCIBILITY; SOLUTION AND SOLUBILITY; SPECTROFLUOROMETRY; STATIC ELECTRICITY; TIME; ULTRAFILTRATION;

ANIMALS; CATTLE; DEXTRANS; DIFFUSION; OSMOLAR CONCENTRATION; PROTEIN BINDING; REPRODUCIBILITY OF RESULTS; RIBONUCLEASES; SOLUTIONS; SPECTROMETRY, FLUORESCENCE; STATIC ELECTRICITY; SUCCINIC ACID; TIME FACTORS; ULTRAFILTRATION;

EID: 80052507460     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2011.05.035     Document Type: Article

References (42)

1. S.B. Zimmerman, and A.P. Minton Macromolecular crowding: biochemical, biophysical, and physiological consequences Annu. Rev. Biophys. Biomol. Struct. 22 1993 27 65 (Pubitemid 23180316)
2. K. Fushimi, and A.S. Verkman Low viscosity in the aqueous domain of cell cytoplasm measured by picosecond polarization microfluorimetry J. Cell Biol. 112 1991 719 725 (Pubitemid 121000384)
3. A.S. Verkman Solute and macromolecule diffusion in cellular aqueous compartments Trends Biochem. Sci. 27 2002 27 33 (Pubitemid 34131622)
4. H.P. Kao, J.R. Abney, and A.S. Verkman Determinants of the translational mobility of a small solute in cell cytoplasm J. Cell Biol. 120 1993 175 184 (Pubitemid 23014077)
5. E.A. Reits, and J.J. Neefjes From fixed to FRAP: measuring protein mobility and activity in living cells Nat. Cell Biol. 3 2001 E145 E147
6. C. Li, Y. Wang, and G.J. Pielak Translational and rotational diffusion of a small globular protein under crowded conditions J. Phys. Chem. B 113 2009 13390 13392
7. S.T. Hess, and S. Huang W.W. Webb Biological and chemical applications of fluorescence correlation spectroscopy: a review Biochemistry 41 2002 697 705 (Pubitemid 34065283)
8. S. Zorrilla, and M.P. Lillo Quantitative investigation of biomolecular interactions in crowded media by fluorescence spectroscopy, a good choice Curr. Protein Pept. Sci. 10 2009 376 387
9. S.P. Zustiak, H. Boukari, and J.B. Leach Solute diffusion and interactions in cross-linked poly(ethylene glycol) hydrogels studied by fluorescence correlation spectroscopy Soft Matter 6 2010 3609 3618
10. M. Weiss, and M. Elsner T. Nilsson Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells Biophys. J. 87 2004 3518 3524 (Pubitemid 40468604)
11. S. Zorrilla, and M.A. Hink M.P. Lillo Translational and rotational motions of proteins in a protein crowded environment Biophys. Chem. 125 2007 298 305 (Pubitemid 46123766)
12. J.P. Clamme, J. Azoulay, and Y. Mély Monitoring of the formation and dissociation of polyethylenimine/DNA complexes by two photon fluorescence correlation spectroscopy Biophys. J. 84 2003 1960 1968 (Pubitemid 36322958)
13. L. Rusu, and A. Gambhir J. Rädler Fluorescence correlation spectroscopy studies of peptide and protein binding to phospholipid vesicles Biophys. J. 87 2004 1044 1053 (Pubitemid 39095083)
14. A. Michelman-Ribeiro, and D. Mazza J.G. McNally Direct measurement of association and dissociation rates of DNA binding in live cells by fluorescence correlation spectroscopy Biophys. J. 97 2009 337 346
15. D.S. Banks, and C. Fradin Anomalous diffusion of proteins due to molecular crowding Biophys. J. 89 2005 2960 2971 (Pubitemid 41636053)
16. H. Sanabria, Y. Kubota, and M.N. Waxham Multiple diffusion mechanisms due to nanostructuring in crowded environments Biophys. J. 92 2007 313 322 (Pubitemid 46048439)
17. G. Baumann, R.F. Place, and Z. Földes-Papp Meaningful interpretation of subdiffusive measurements in living cells (crowded environment) by fluorescence fluctuation microscopy Curr. Pharm. Biotechnol. 11 2010 527 543
18. P. Schwille, J. Korlach, and W.W. Webb Fluorescence correlation spectroscopy with single-molecule sensitivity on cell and model membranes Cytometry 36 1999 176 182 (Pubitemid 29291466)
19. M. Wachsmuth, W. Waldeck, and J. Langowski Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy J. Mol. Biol. 298 2000 677 689
20. M.C. Konopka, and I.A. Shkel J.C. Weisshaar Crowding and confinement effects on protein diffusion in vivo J. Bacteriol. 188 2006 6115 6123 (Pubitemid 44448553)
21. M. Ormö, and B.M. Sjöberg An ultrafiltration assay for nucleotide binding to ribonucleotide reductase Anal. Biochem. 189 1990 138 141
22. D. Magde, E.L. Elson, and W.W. Webb Fluorescence correlation spectroscopy. II. An experimental realization Biopolymers 13 1974 29 61
23. R.R. Walters, and J.F. Graham D.J. Anderson Protein diffusion coefficient measurements by laminar flow analysis: method and applications Anal. Biochem. 140 1984 190 195
24. L. Lebrun, and G.A. Junter Diffusion of sucrose and dextran through agar gel membranes Enzyme Microb. Technol. 15 1993 1057 1062 (Pubitemid 23342926)
25. E. Dauty, and A.S. Verkman Molecular crowding reduces to a similar extent the diffusion of small solutes and macromolecules: measurement by fluorescence correlation spectroscopy J. Mol. Recognit. 17 2004 441 447 (Pubitemid 39218987)
26. A.B. Goins, H. Sanabria, and M.N. Waxham Macromolecular crowding and size effects on probe microviscosity Biophys. J. 95 2008 5362 5373
27. J. Tong, and J.L. Anderson Partitioning and diffusion of proteins and linear polymers in polyacrylamide gels Biophys. J. 70 1996 1505 1513 (Pubitemid 26073062)
28. T. Stylianopoulos, and M.Z. Poh R.K. Jain Diffusion of particles in the extracellular matrix: the effect of repulsive electrostatic interactions Biophys. J. 99 2010 1342 1349
29. T.F. Kosar, and R.J. Phillips Measurement of protein diffusion in dextran solutions by holographic interferometry AIChE J. 41 1995 701 711
30. M. Anderot, and M. Nilsson R. Isaksson Determination of dissociation constants between polyelectrolytes and proteins by affinity capillary electrophoresis J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 877 2009 892 896
31. M. Hollecker, and T.E. Creighton Effect on protein stability of reversing the charge on amino groups Biochim. Biophys. Acta 701 1982 395 404
32. S.S. Jena, and V.A. Bloomfield Probe diffusion in concentrated polyelectrolyte solutions: effect of background interactions on competition between electrostatic and viscous forces Macromolecules 38 2005 10551 10556 (Pubitemid 43010767)
33. K. Luby-Phelps Physical properties of cytoplasm Curr. Opin. Cell Biol. 6 1994 3 9 (Pubitemid 24048688)
34. O. Seksek, J. Biwersi, and A.S. Verkman Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus J. Cell Biol. 138 1997 131 142 (Pubitemid 27337458)
35. A. Nöppert, and K. Gast G. Damaschun Reduced-denatured ribonuclease A is not in a compact state FEBS Lett. 380 1996 179 182 (Pubitemid 26058754)
36. S.B. Libicki, P.M. Salmon, and C.R. Robertson The effective diffusive permeability of a nonreacting solute in microbial cell aggregates Biotechnol. Bioeng. 32 1988 68 85
37. M.N. Teruel, and T. Meyer Translocation and reversible localization of signaling proteins: a dynamic future for signal transduction Cell 103 2000 181 184
38. G.R. Hammond, and Y. Sim R.F. Irvine Reversible binding and rapid diffusion of proteins in complex with inositol lipids serves to coordinate free movement with spatial information J. Cell Biol. 184 2009 297 308
39. S. Zorrilla, and M. Jiménez A.P. Minton Sedimentation equilibrium in a solution containing an arbitrary number of solute species at arbitrary concentrations: theory and application to concentrated solutions of ribonuclease Biophys. Chem. 108 2004 89 100 (Pubitemid 38388483)
40. U. Meseth, and T. Wohland H. Vogel Resolution of fluorescence correlation measurements Biophys. J. 76 1999 1619 1631 (Pubitemid 29262640)
41. Z.J. Tan, and S.J. Chen Electrostatic correlations and fluctuations for ion binding to a finite length polyelectrolyte J. Chem. Phys. 122 2005 44903
42. E. Dauty, and A.S. Verkman Actin cytoskeleton as the principal determinant of size-dependent DNA mobility in cytoplasm: a new barrier for non-viral gene delivery J. Biol. Chem. 280 2005 7823 7828 (Pubitemid 40349677)