메뉴 건너뛰기




Volumn 157, Issue 1, 2011, Pages 386-404

Intracompartmental and intercompartmental transcriptional networks coordinate the expression of genes for organellar functions

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 80052422961     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.111.177691     Document Type: Article
Times cited : (41)

References (106)
  • 1
    • 60449089632 scopus 로고    scopus 로고
    • Molecular interactions between light and hormone signaling to control plant growth
    • Alabadí D, Blázquez MA (2009) Molecular interactions between light and hormone signaling to control plant growth. Plant Mol Biol 69: 409-417
    • (2009) Plant Mol Biol , vol.69 , pp. 409-417
    • Alabadí, D.1    Blázquez, M.A.2
  • 2
    • 3242715114 scopus 로고    scopus 로고
    • Reactive oxygen species: Metabolism, oxidative stress, and signal transduction
    • Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 55: 373-399
    • (2004) Annu Rev Plant Biol , vol.55 , pp. 373-399
    • Apel, K.1    Hirt, H.2
  • 3
    • 0033860532 scopus 로고    scopus 로고
    • Participation of nuclear genes in chloroplast gene expression
    • Barkan A, Goldschmidt-Clermont M (2000) Participation of nuclear genes in chloroplast gene expression. Biochimie 82: 559-572
    • (2000) Biochimie , vol.82 , pp. 559-572
    • Barkan, A.1    Goldschmidt-Clermont, M.2
  • 4
    • 27844460082 scopus 로고    scopus 로고
    • Signaling pathways from the chloroplast to the nucleus
    • Beck CF (2005) Signaling pathways from the chloroplast to the nucleus. Planta 222: 743-756
    • (2005) Planta , vol.222 , pp. 743-756
    • Beck, C.F.1
  • 5
    • 12344262879 scopus 로고    scopus 로고
    • Analysis of 101 nuclear transcriptomes reveals 23 distinct regulons and their relationship to metabolism, chromosomal gene distribution and co-ordination of nuclear and plastid gene expression
    • Biehl A, Richly E, Noutsos C, Salamini F, Leister D (2005) Analysis of 101 nuclear transcriptomes reveals 23 distinct regulons and their relationship to metabolism, chromosomal gene distribution and co-ordination of nuclear and plastid gene expression. Gene 344: 33-41
    • (2005) Gene , vol.344 , pp. 33-41
    • Biehl, A.1    Richly, E.2    Noutsos, C.3    Salamini, F.4    Leister, D.5
  • 7
    • 70849111821 scopus 로고    scopus 로고
    • Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis
    • Bräutigam K, Dietzel L, Kleine T, Ströher E, Wormuth D, Dietz KJ, Radke D, Wirtz M, Hell R, Dörmann P, et al (2009) Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis. Plant Cell 21: 2715-2732
    • (2009) Plant Cell , vol.21 , pp. 2715-2732
    • Bräutigam, K.1    Dietzel, L.2    Kleine, T.3    Ströher, E.4    Wormuth, D.5    Dietz, K.J.6    Radke, D.7    Wirtz, M.8    Hell, R.9    Dörmann, P.10
  • 8
    • 0034323472 scopus 로고    scopus 로고
    • Ontogenetic changes in the photosynthetic apparatus and effect of cytokinins
    • Cherniad'ev II (2000) [Ontogenetic changes in the photosynthetic apparatus and effect of cytokinins]. Prikl Biokhim Mikrobiol 36: 611-625
    • (2000) Prikl Biokhim Mikrobiol , vol.36 , pp. 611-625
    • Cherniad'ev, I.I.1
  • 9
    • 65249165448 scopus 로고    scopus 로고
    • Cluster analysis and comparison of various chloroplast transcriptomes and genes in Arabidopsis thaliana
    • Cho WK, Geimer S, Meurer J (2009) Cluster analysis and comparison of various chloroplast transcriptomes and genes in Arabidopsis thaliana. DNA Res 16: 31-44
    • (2009) DNA Res , vol.16 , pp. 31-44
    • Cho, W.K.1    Geimer, S.2    Meurer, J.3
  • 10
    • 33750435187 scopus 로고    scopus 로고
    • Regulatory functions of nuclear hexokinase1 complex in glucose signaling
    • Cho YH, Yoo SD, Sheen J (2006) Regulatory functions of nuclear hexokinase1 complex in glucose signaling. Cell 127: 579-589
    • (2006) Cell , vol.127 , pp. 579-589
    • Cho, Y.H.1    Yoo, S.D.2    Sheen, J.3
  • 11
    • 0037010174 scopus 로고    scopus 로고
    • Translational regulations as specific traits of chloroplast gene expression
    • Choquet Y, Wollman FA (2002) Translational regulations as specific traits of chloroplast gene expression. FEBS Lett 529: 39-42
    • (2002) FEBS Lett , vol.529 , pp. 39-42
    • Choquet, Y.1    Wollman, F.A.2
  • 12
    • 70350045014 scopus 로고    scopus 로고
    • Identification of regulatory elements involved in expression and induction by sucrose and UV-B light of the Arabidopsis thaliana COX5b-2 gene, encoding an isoform of cytochrome c oxidase subunit 5b
    • Comelli RN, Gonzalez DH (2009) Identification of regulatory elements involved in expression and induction by sucrose and UV-B light of the Arabidopsis thaliana COX5b-2 gene, encoding an isoform of cytochrome c oxidase subunit 5b. Physiol Plant 137: 213-224
    • (2009) Physiol Plant , vol.137 , pp. 213-224
    • Comelli, R.N.1    Gonzalez, D.H.2
  • 13
    • 33344455077 scopus 로고    scopus 로고
    • The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis
    • Davletova S, Schlauch K, Coutu J, Mittler R (2005) The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol 139: 847-856
    • (2005) Plant Physiol , vol.139 , pp. 847-856
    • Davletova, S.1    Schlauch, K.2    Coutu, J.3    Mittler, R.4
  • 14
    • 0025375525 scopus 로고
    • Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter
    • Donald RG, Cashmore AR (1990) Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter. EMBO J 9: 1717-1726
    • (1990) EMBO J , vol.9 , pp. 1717-1726
    • Donald, R.G.1    Cashmore, A.R.2
  • 17
    • 16544373316 scopus 로고    scopus 로고
    • Light regulation of the Arabidopsis respiratory chain: Multiple discrete photoreceptor responses contribute to induction of type II NAD(P)H dehydrogenase genes
    • Escobar MA, Franklin KA, Svensson AS, Salter MG, Whitelam GC, Rasmusson AG (2004) Light regulation of the Arabidopsis respiratory chain: multiple discrete photoreceptor responses contribute to induction of type II NAD(P)H dehydrogenase genes. Plant Physiol 136: 2710-2721
    • (2004) Plant Physiol , vol.136 , pp. 2710-2721
    • Escobar, M.A.1    Franklin, K.A.2    Svensson, A.S.3    Salter, M.G.4    Whitelam, G.C.5    Rasmusson, A.G.6
  • 19
    • 31344440303 scopus 로고    scopus 로고
    • Coordination of nuclear and mitochondrial genome expression during mitochondrial biogenesis in Arabidopsis
    • Giegé P, Sweetlove LJ, Cognat V, Leaver CJ (2005) Coordination of nuclear and mitochondrial genome expression during mitochondrial biogenesis in Arabidopsis. Plant Cell 17: 1497-1512
    • (2005) Plant Cell , vol.17 , pp. 1497-1512
    • Giegé, P.1    Sweetlove, L.J.2    Cognat, V.3    Leaver, C.J.4
  • 20
    • 67650173467 scopus 로고    scopus 로고
    • The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a
    • Giraud E, Van Aken O, Ho LH, Whelan J (2009) The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a. Plant Physiol 150: 1286-1296
    • (2009) Plant Physiol , vol.150 , pp. 1286-1296
    • Giraud, E.1    van Aken, O.2    Ho, L.H.3    Whelan, J.4
  • 22
    • 0031011722 scopus 로고    scopus 로고
    • The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids
    • Hajdukiewicz PT, Allison LA, Maliga P (1997) The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J 16: 4041-4048
    • (1997) EMBO J , vol.16 , pp. 4041-4048
    • Hajdukiewicz, P.T.1    Allison, L.A.2    Maliga, P.3
  • 23
    • 0347519277 scopus 로고    scopus 로고
    • Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase, in Arabidopsis thaliana
    • Hanaoka M, Kanamaru K, Takahashi H, Tanaka K (2003) Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase, in Arabidopsis thaliana. Nucleic Acids Res 31: 7090-7098
    • (2003) Nucleic Acids Res , vol.31 , pp. 7090-7098
    • Hanaoka, M.1    Kanamaru, K.2    Takahashi, H.3    Tanaka, K.4
  • 25
    • 0036743358 scopus 로고    scopus 로고
    • Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators
    • Hosoda K, Imamura A, Katoh E, Hatta T, Tachiki M, Yamada H, Mizuno T, Yamazaki T (2002) Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators. Plant Cell 14: 2015-2029
    • (2002) Plant Cell , vol.14 , pp. 2015-2029
    • Hosoda, K.1    Imamura, A.2    Katoh, E.3    Hatta, T.4    Tachiki, M.5    Yamada, H.6    Mizuno, T.7    Yamazaki, T.8
  • 26
    • 17844370549 scopus 로고    scopus 로고
    • A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons
    • Ishizaki Y, Tsunoyama Y, Hatano K, Ando K, Kato K, Shinmyo A, Kobori M, Takeba G, Nakahira Y, Shiina T (2005) A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons. Plant J 42: 133-144
    • (2005) Plant J , vol.42 , pp. 133-144
    • Ishizaki, Y.1    Tsunoyama, Y.2    Hatano, K.3    Ando, K.4    Kato, K.5    Shinmyo, A.6    Kobori, M.7    Takeba, G.8    Nakahira, Y.9    Shiina, T.10
  • 27
    • 47249152709 scopus 로고    scopus 로고
    • Targeting of nucleus-encoded proteins to chloroplasts in plants
    • Jarvis P (2008) Targeting of nucleus-encoded proteins to chloroplasts in plants. New Phytol 179: 257-285
    • (2008) New Phytol , vol.179 , pp. 257-285
    • Jarvis, P.1
  • 28
    • 67349128950 scopus 로고    scopus 로고
    • New candidate genes for heat resistance in Drosophila melanogaster are regulated by HSF
    • Jensen LT, Nielsen MM, Loeschcke V (2008) New candidate genes for heat resistance in Drosophila melanogaster are regulated by HSF. Cell Stress Chaperones 13: 177-182
    • (2008) Cell Stress Chaperones , vol.13 , pp. 177-182
    • Jensen, L.T.1    Nielsen, M.M.2    Loeschcke, V.3
  • 29
    • 0038019453 scopus 로고    scopus 로고
    • Use of SAGE technology to reveal changes in gene expression in Arabidopsis leaves undergoing cold stress
    • Jung SH, Lee JY, Lee DH (2003) Use of SAGE technology to reveal changes in gene expression in Arabidopsis leaves undergoing cold stress. Plant Mol Biol 52: 553-567
    • (2003) Plant Mol Biol , vol.52 , pp. 553-567
    • Jung, S.H.1    Lee, J.Y.2    Lee, D.H.3
  • 30
    • 67649841932 scopus 로고    scopus 로고
    • 1O2-mediated retrograde signaling during late embryogenesis predetermines plastid differentiation in seedlings by recruiting abscisic acid
    • Kim C, Lee KP, Baruah A, Nater M, Göbel C, Feussner I, Apel K (2009) 1O2-mediated retrograde signaling during late embryogenesis predetermines plastid differentiation in seedlings by recruiting abscisic acid. Proc Natl Acad Sci USA 106: 9920-9924
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9920-9924
    • Kim, C.1    Lee, K.P.2    Baruah, A.3    Nater, M.4    Göbel, C.5    Feussner, I.6    Apel, K.7
  • 33
    • 66449102561 scopus 로고    scopus 로고
    • DNA transfer from organelles to the nucleus: The idiosyncratic genetics of endosymbiosis
    • Kleine T, Maier UG, Leister D (2009a) DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis. Annu Rev Plant Biol 60: 115-138
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 115-138
    • Kleine, T.1    Maier, U.G.2    Leister, D.3
  • 34
    • 63449124134 scopus 로고    scopus 로고
    • Plastid signalling to the nucleus: Messengers still lost in the mists?
    • Kleine T, Voigt C, Leister D (2009b) Plastid signalling to the nucleus: messengers still lost in the mists? Trends Genet 25: 185-192
    • (2009) Trends Genet , vol.25 , pp. 185-192
    • Kleine, T.1    Voigt, C.2    Leister, D.3
  • 36
    • 33846331967 scopus 로고    scopus 로고
    • Cross-talk between singlet oxygen- and hydrogen peroxidedependent signaling of stress responses in Arabidopsis thaliana
    • Laloi C, Stachowiak M, Pers-Kamczyc E, Warzych E, Murgia I, Apel K (2007) Cross-talk between singlet oxygen- and hydrogen peroxidedependent signaling of stress responses in Arabidopsis thaliana. Proc Natl Acad Sci USA 104: 672-677
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 672-677
    • Laloi, C.1    Stachowiak, M.2    Pers-Kamczyc, E.3    Warzych, E.4    Murgia, I.5    Apel, K.6
  • 37
    • 56349084173 scopus 로고    scopus 로고
    • Integration of light and plastid signals
    • Larkin RM, Ruckle ME (2008) Integration of light and plastid signals. Curr Opin Plant Biol 11: 593-599
    • (2008) Curr Opin Plant Biol , vol.11 , pp. 593-599
    • Larkin, R.M.1    Ruckle, M.E.2
  • 38
    • 78049304632 scopus 로고    scopus 로고
    • Plant hormone signaling lightens up: Integrators of light and hormones
    • Lau OS, Deng XW (2010) Plant hormone signaling lightens up: integrators of light and hormones. Curr Opin Plant Biol 13: 571-577
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 571-577
    • Lau, O.S.1    Deng, X.W.2
  • 39
    • 23644458269 scopus 로고    scopus 로고
    • Genomics-based dissection of the cross-talk of chloroplasts with the nucleus and mitochondria in Arabidopsis
    • Leister D (2005) Genomics-based dissection of the cross-talk of chloroplasts with the nucleus and mitochondria in Arabidopsis. Gene 354: 110-116
    • (2005) Gene , vol.354 , pp. 110-116
    • Leister, D.1
  • 40
    • 79957868780 scopus 로고    scopus 로고
    • Function of plastid sigma factors in higher plants: Regulation of gene expression or just preservation of constitutive transcription?
    • Lerbs-Mache S (2011) Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription? Plant Mol Biol 76: 235-249
    • (2011) Plant Mol Biol , vol.76 , pp. 235-249
    • Lerbs-Mache, S.1
  • 41
    • 0033033414 scopus 로고    scopus 로고
    • Brassinosteroid actions in plants
    • Li JM, Chory J (1999) Brassinosteroid actions in plants. J Exp Bot 50: 275-282
    • (1999) J Exp Bot , vol.50 , pp. 275-282
    • Li, J.M.1    Chory, J.2
  • 42
    • 79958769961 scopus 로고    scopus 로고
    • The transcription machineries of plant mitochondria and chloroplasts: Composition, function, and regulation
    • Liere K, Weihe A, Börner T (2011) The transcription machineries of plant mitochondria and chloroplasts: composition, function, and regulation. J Plant Physiol 168: 1345-1360
    • (2011) J Plant Physiol , vol.168 , pp. 1345-1360
    • Liere, K.1    Weihe, A.2    Börner, T.3
  • 43
    • 46449123335 scopus 로고    scopus 로고
    • Transcription factor and micro- RNA motif discovery: The Amadeus platform and a compendium of metazoan target sets
    • Linhart C, Halperin Y, Shamir R (2008) Transcription factor and micro- RNA motif discovery: the Amadeus platform and a compendium of metazoan target sets. Genome Res 18: 1180-1189
    • (2008) Genome Res , vol.18 , pp. 1180-1189
    • Linhart, C.1    Halperin, Y.2    Shamir, R.3
  • 44
    • 77953319998 scopus 로고    scopus 로고
    • Human mitochondrial transcription revisited: Only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro
    • Litonin D, Sologub M, Shi Y, Savkina M, Anikin M, Falkenberg M, Gustafsson CM, Temiakov D (2010) Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro. J Biol Chem 285: 18129-18133
    • (2010) J Biol Chem , vol.285 , pp. 18129-18133
    • Litonin, D.1    Sologub, M.2    Shi, Y.3    Savkina, M.4    Anikin, M.5    Falkenberg, M.6    Gustafsson, C.M.7    Temiakov, D.8
  • 45
    • 0027979244 scopus 로고
    • Two binding sites for the plant transcription factor ASF-1 can respond to auxin treatments in transgenic tobacco
    • Liu XJ, Lam E (1994) Two binding sites for the plant transcription factor ASF-1 can respond to auxin treatments in transgenic tobacco. J Biol Chem 269: 668-675
    • (1994) J Biol Chem , vol.269 , pp. 668-675
    • Liu, X.J.1    Lam, E.2
  • 46
    • 33845656956 scopus 로고    scopus 로고
    • Mitochondrial retrograde signaling
    • Liu Z, Butow RA (2006) Mitochondrial retrograde signaling. Annu Rev Genet 40: 159-185
    • (2006) Annu Rev Genet , vol.40 , pp. 159-185
    • Liu, Z.1    Butow, R.A.2
  • 47
    • 33750084713 scopus 로고    scopus 로고
    • Dual temporal role of plastid sigma factor 6 in Arabidopsis development
    • Loschelder H, Schweer J, Link B, Link G (2006) Dual temporal role of plastid sigma factor 6 in Arabidopsis development. Plant Physiol 142: 642-650
    • (2006) Plant Physiol , vol.142 , pp. 642-650
    • Loschelder, H.1    Schweer, J.2    Link, B.3    Link, G.4
  • 48
    • 42149185025 scopus 로고    scopus 로고
    • Co-regulation of nuclear genes encoding plastid ribosomal proteins by light and plastid signals during seedling development in tobacco and Arabidopsis
    • Maclean D, Jerome CA, Brown AP, Gray JC (2008) Co-regulation of nuclear genes encoding plastid ribosomal proteins by light and plastid signals during seedling development in tobacco and Arabidopsis. Plant Mol Biol 66: 475-490
    • (2008) Plant Mol Biol , vol.66 , pp. 475-490
    • Maclean, D.1    Jerome, C.A.2    Brown, A.P.3    Gray, J.C.4
  • 49
    • 0003092129 scopus 로고
    • Studies on reactions of illuminated chloroplasts. I. Mechanism of the reduction of oxygen and other Hill reagents
    • Mehler AH (1951) Studies on reactions of illuminated chloroplasts. I. Mechanism of the reduction of oxygen and other Hill reagents. Arch Biochem Biophys 33: 65-77
    • (1951) Arch Biochem Biophys , vol.33 , pp. 65-77
    • Mehler, A.H.1
  • 50
    • 0028352069 scopus 로고
    • Novel conserved sequence motifs in plant G-box binding proteins and implications for interactive domains
    • Meier I, Gruissem W (1994) Novel conserved sequence motifs in plant G-box binding proteins and implications for interactive domains. Nucleic Acids Res 22: 470-478
    • (1994) Nucleic Acids Res , vol.22 , pp. 470-478
    • Meier, I.1    Gruissem, W.2
  • 51
    • 0025797479 scopus 로고
    • Dynamics of photosynthetic membrane-composition and function
    • Melis A (1991) Dynamics of photosynthetic membrane-composition and function. Biochim Biophys Acta 1058: 87-106
    • (1991) Biochim Biophys Acta , vol.1058 , pp. 87-106
    • Melis, A.1
  • 53
    • 0035852789 scopus 로고    scopus 로고
    • Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction
    • Mochizuki N, Brusslan JA, Larkin R, Nagatani A, Chory J (2001) Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. Proc Natl Acad Sci USA 98: 2053-2058
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 2053-2058
    • Mochizuki, N.1    Brusslan, J.A.2    Larkin, R.3    Nagatani, A.4    Chory, J.5
  • 54
    • 67651083573 scopus 로고    scopus 로고
    • Common sets of promoter elements determine the expression characteristics of three Arabidopsis genes encoding isoforms of mitochondrial cytochrome c oxidase subunit 6b
    • Mufarrege EF, Curi GC, Gonzalez DH (2009) Common sets of promoter elements determine the expression characteristics of three Arabidopsis genes encoding isoforms of mitochondrial cytochrome c oxidase subunit 6b. Plant Cell Physiol 50: 1393-1399
    • (2009) Plant Cell Physiol , vol.50 , pp. 1393-1399
    • Mufarrege, E.F.1    Curi, G.C.2    Gonzalez, D.H.3
  • 55
    • 0036801544 scopus 로고    scopus 로고
    • Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes
    • Niu X, Helentjaris T, Bate NJ (2002) Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes. Plant Cell 14: 2565-2575
    • (2002) Plant Cell , vol.14 , pp. 2565-2575
    • Niu, X.1    Helentjaris, T.2    Bate, N.J.3
  • 57
    • 1442281536 scopus 로고    scopus 로고
    • Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis
    • Ohgishi M, Saji K, Okada K, Sakai T (2004) Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis. Proc Natl Acad Sci USA 101: 2223-2228
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 2223-2228
    • Ohgishi, M.1    Saji, K.2    Okada, K.3    Sakai, T.4
  • 58
    • 33745390314 scopus 로고    scopus 로고
    • Transcript levels in plant mitochondria show a tight homeostasis during day and night
    • Okada S, Brennicke A (2006) Transcript levels in plant mitochondria show a tight homeostasis during day and night. Mol Genet Genomics 276: 71-78
    • (2006) Mol Genet Genomics , vol.276 , pp. 71-78
    • Okada, S.1    Brennicke, A.2
  • 59
    • 0001630788 scopus 로고
    • Photooxidative destruction of chloroplasts and its consequences for expression of nuclear genes
    • Oelmüller R, Mohr H (1986) Photooxidative destruction of chloroplasts and its consequences for expression of nuclear genes. Planta 167: 106-113
    • (1986) Planta , vol.167 , pp. 106-113
    • Oelmüller, R.1    Mohr, H.2
  • 61
    • 33747492075 scopus 로고    scopus 로고
    • Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm
    • Penfield S, Li Y, Gilday AD, Graham S, Graham IA (2006) Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm. Plant Cell 18: 1887-1899
    • (2006) Plant Cell , vol.18 , pp. 1887-1899
    • Penfield, S.1    Li, Y.2    Gilday, A.D.3    Graham, S.4    Graham, I.A.5
  • 62
    • 36348952053 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA
    • Peng M, Bi YM, Zhu T, Rothstein SJ (2007) Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. Plant Mol Biol 65: 775-797
    • (2007) Plant Mol Biol , vol.65 , pp. 775-797
    • Peng, M.1    Bi, Y.M.2    Zhu, T.3    Rothstein, S.J.4
  • 64
    • 0037267882 scopus 로고    scopus 로고
    • Chloroplast redox signals: How photosynthesis controls its own genes
    • Pfannschmidt T (2003) Chloroplast redox signals: how photosynthesis controls its own genes. Trends Plant Sci 8: 33-41
    • (2003) Trends Plant Sci , vol.8 , pp. 33-41
    • Pfannschmidt, T.1
  • 65
    • 79251480045 scopus 로고    scopus 로고
    • Photosynthesis and drought: Can we make metabolic connections from available data?
    • Pinheiro C, Chaves MM (2011) Photosynthesis and drought: can we make metabolic connections from available data? J Exp Bot 62: 869-882
    • (2011) J Exp Bot , vol.62 , pp. 869-882
    • Pinheiro, C.1    Chaves, M.M.2
  • 67
    • 40549146278 scopus 로고    scopus 로고
    • The TAIR database
    • Poole RL (2007) The TAIR database. Methods Mol Biol 406: 179-212
    • (2007) Methods Mol Biol , vol.406 , pp. 179-212
    • Poole, R.L.1
  • 68
    • 0344064882 scopus 로고    scopus 로고
    • Beneficial interactions of mitochondrial metabolism with photosynthetic carbon assimilation
    • Raghavendra AS, Padmasree K (2003) Beneficial interactions of mitochondrial metabolism with photosynthetic carbon assimilation. Trends Plant Sci 8: 546-553
    • (2003) Trends Plant Sci , vol.8 , pp. 546-553
    • Raghavendra, A.S.1    Padmasree, K.2
  • 69
    • 8144226823 scopus 로고    scopus 로고
    • Cytonuclear coevolution: The genomics of cooperation
    • Rand DM, Haney RA, Fry AJ (2004) Cytonuclear coevolution: the genomics of cooperation. Trends Ecol Evol 19: 645-653
    • (2004) Trends Ecol Evol , vol.19 , pp. 645-653
    • Rand, D.M.1    Haney, R.A.2    Fry, A.J.3
  • 70
    • 33947188157 scopus 로고    scopus 로고
    • Mitochondrial retrograde regulation in plants
    • Rhoads DM, Subbaiah CC (2007) Mitochondrial retrograde regulation in plants. Mitochondrion 7: 177-194
    • (2007) Mitochondrion , vol.7 , pp. 177-194
    • Rhoads, D.M.1    Subbaiah, C.C.2
  • 72
    • 0035141874 scopus 로고    scopus 로고
    • Posttranscriptional control of chloroplast gene expression: From RNA to photosynthetic complex
    • Rochaix JD (2001) Posttranscriptional control of chloroplast gene expression: from RNA to photosynthetic complex. Plant Physiol 125: 142-144
    • (2001) Plant Physiol , vol.125 , pp. 142-144
    • Rochaix, J.D.1
  • 73
    • 0038505664 scopus 로고    scopus 로고
    • Pathways of intracellular communication: Tetrapyrroles and plastid-to-nucleus signaling
    • Rodermel S, Park S (2003) Pathways of intracellular communication: tetrapyrroles and plastid-to-nucleus signaling. Bioessays 25: 631-636
    • (2003) Bioessays , vol.25 , pp. 631-636
    • Rodermel, S.1    Park, S.2
  • 74
    • 33745908987 scopus 로고    scopus 로고
    • Sugar sensing and signaling in plants: Conserved and novel mechanisms
    • Rolland F, Baena-Gonzalez E, Sheen J (2006) Sugar sensing and signaling in plants: conserved and novel mechanisms. Annu Rev Plant Biol 57: 675-709
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 675-709
    • Rolland, F.1    Baena-Gonzalez, E.2    Sheen, J.3
  • 76
    • 39149120554 scopus 로고    scopus 로고
    • Plastid signals remodel light signaling networks and are essential for efficient chloroplast biogenesis in Arabidopsis
    • Ruckle ME, DeMarco SM, Larkin RM (2007) Plastid signals remodel light signaling networks and are essential for efficient chloroplast biogenesis in Arabidopsis. Plant Cell 19: 3944-3960
    • (2007) Plant Cell , vol.19 , pp. 3944-3960
    • Ruckle, M.E.1    Demarco, S.M.2    Larkin, R.M.3
  • 77
    • 63449142324 scopus 로고    scopus 로고
    • Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1
    • Ruckle ME, Larkin RM (2009) Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1. New Phytol 182: 367-379
    • (2009) New Phytol , vol.182 , pp. 367-379
    • Ruckle, M.E.1    Larkin, R.M.2
  • 79
    • 0242615857 scopus 로고    scopus 로고
    • Cytokinins as regulators of gene expression
    • Schmülling T, Schafer S, Romanov G (1997) Cytokinins as regulators of gene expression. Physiol Plant 100: 505-519
    • (1997) Physiol Plant , vol.100 , pp. 505-519
    • Schmülling, T.1    Schafer, S.2    Romanov, G.3
  • 80
    • 78149411702 scopus 로고    scopus 로고
    • Role and regulation of plastid sigma factors and their functional interactors during chloroplast transcription: Recent lessons from Arabidopsis thaliana
    • Schweer J, Türkeri H, Kolpack A, Link G (2010) Role and regulation of plastid sigma factors and their functional interactors during chloroplast transcription: recent lessons from Arabidopsis thaliana. Eur J Cell Biol 89: 940-946
    • (2010) Eur J Cell Biol , vol.89 , pp. 940-946
    • Schweer, J.1    Türkeri, H.2    Kolpack, A.3    Link, G.4
  • 84
    • 65249186791 scopus 로고    scopus 로고
    • Induction of the AOX1D isoform of alternative oxidase in A. thaliana T-DNA insertion lines lacking isoform AOX1A is insufficient to optimize photosynthesis when treated with antimycin A
    • Strodtkötter I, Padmasree K, Dinakar C, Speth B, Niazi PS, Wojtera J, Voss I, Do PT, Nunes-Nesi A, Fernie AR, et al (2009) Induction of the AOX1D isoform of alternative oxidase in A. thaliana T-DNA insertion lines lacking isoform AOX1A is insufficient to optimize photosynthesis when treated with antimycin A. Mol Plant 2: 284-297
    • (2009) Mol Plant , vol.2 , pp. 284-297
    • Strodtkötter, I.1    Padmasree, K.2    Dinakar, C.3    Speth, B.4    Niazi, P.S.5    Wojtera, J.6    Voss, I.7    Do, P.T.8    Nunes-Nesi, A.9    Fernie, A.R.10
  • 85
    • 79551565291 scopus 로고    scopus 로고
    • HYPOSENSITIVE TO LIGHT, an alpha/beta fold protein, acts downstream of ELONGATED HYPOCOTYL 5 to regulate seedling de-etiolation
    • Sun XD, Ni M (2011) HYPOSENSITIVE TO LIGHT, an alpha/beta fold protein, acts downstream of ELONGATED HYPOCOTYL 5 to regulate seedling de-etiolation. Mol Plant 4: 116-126
    • (2011) Mol Plant , vol.4 , pp. 116-126
    • Sun, X.D.1    Ni, M.2
  • 86
    • 0027214202 scopus 로고
    • Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development
    • Susek RE, Ausubel FM, Chory J (1993) Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. Cell 74: 787-799
    • (1993) Cell , vol.74 , pp. 787-799
    • Susek, R.E.1    Ausubel, F.M.2    Chory, J.3
  • 87
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: An R package for assessing the uncertainty in hierarchical clustering
    • Suzuki R, Shimodaira H (2006) Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22: 1540-1542
    • (2006) Bioinformatics , vol.22 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2
  • 88
    • 0034782250 scopus 로고    scopus 로고
    • Light-dependent gene expression for proteins in the respiratory chain of potato leaves
    • Svensson AS, Rasmusson AG (2001) Light-dependent gene expression for proteins in the respiratory chain of potato leaves. Plant J 28: 73-82
    • (2001) Plant J , vol.28 , pp. 73-82
    • Svensson, A.S.1    Rasmusson, A.G.2
  • 89
    • 34248639033 scopus 로고    scopus 로고
    • High diversity of plastidial promoters in Arabidopsis thaliana
    • Swiatecka-Hagenbruch M, Liere K, Börner T (2007) High diversity of plastidial promoters in Arabidopsis thaliana. Mol Genet Genomics 277: 725-734
    • (2007) Mol Genet Genomics , vol.277 , pp. 725-734
    • Swiatecka-Hagenbruch, M.1    Liere, K.2    Börner, T.3
  • 91
    • 34547123115 scopus 로고    scopus 로고
    • Top-down phenomics of Arabidopsis thaliana: Metabolic profiling by one- and two-dimensional nuclear magnetic resonance spectroscopy and transcriptome analysis of albino mutants
    • Tian C, Chikayama E, Tsuboi Y, Kuromori T, Shinozaki K, Kikuchi J, Hirayama T (2007) Top-down phenomics of Arabidopsis thaliana: metabolic profiling by one- and two-dimensional nuclear magnetic resonance spectroscopy and transcriptome analysis of albino mutants. J Biol Chem 282: 18532-18541
    • (2007) J Biol Chem , vol.282 , pp. 18532-18541
    • Tian, C.1    Chikayama, E.2    Tsuboi, Y.3    Kuromori, T.4    Shinozaki, K.5    Kikuchi, J.6    Hirayama, T.7
  • 92
    • 0742323538 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
    • Timmis JN, Ayliffe MA, Huang CY, Martin W (2004) Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet 5: 123-135
    • (2004) Nat Rev Genet , vol.5 , pp. 123-135
    • Timmis, J.N.1    Ayliffe, M.A.2    Huang, C.Y.3    Martin, W.4
  • 93
    • 33645011305 scopus 로고    scopus 로고
    • Characterization of transformed Arabidopsis with altered alternative oxidase levels and analysis of effects on reactive oxygen species in tissue
    • Umbach AL, Fiorani F, Siedow JN (2005) Characterization of transformed Arabidopsis with altered alternative oxidase levels and analysis of effects on reactive oxygen species in tissue. Plant Physiol 139: 1806-1820
    • (2005) Plant Physiol , vol.139 , pp. 1806-1820
    • Umbach, A.L.1    Fiorani, F.2    Siedow, J.N.3
  • 95
    • 33644653602 scopus 로고    scopus 로고
    • Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis
    • Vanderauwera S, Zimmermann P, Rombauts S, Vandenabeele S, Langebartels C, Gruissem W, Inzé D, Van Breusegem F (2005) Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol 139: 806-821
    • (2005) Plant Physiol , vol.139 , pp. 806-821
    • Vanderauwera, S.1    Zimmermann, P.2    Rombauts, S.3    Vandenabeele, S.4    Langebartels, C.5    Gruissem, W.6    Inzé, D.7    van Breusegem, F.8
  • 96
    • 29544438551 scopus 로고    scopus 로고
    • Differential expression of the Arabidopsis cytochrome c genes Cytc-1 and Cytc-2: Evidence for the involvement of TCP-domain protein-binding elements in anther- and meristem-specific expression of the Cytc-1 gene
    • Welchen E, Gonzalez DH (2005) Differential expression of the Arabidopsis cytochrome c genes Cytc-1 and Cytc-2: evidence for the involvement of TCP-domain protein-binding elements in anther- and meristem-specific expression of the Cytc-1 gene. Plant Physiol 139: 88-100
    • (2005) Plant Physiol , vol.139 , pp. 88-100
    • Welchen, E.1    Gonzalez, D.H.2
  • 97
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: A database on transcription factors and their DNA binding sites
    • Wingender E, Dietze P, Karas H, Knüppel R (1996) TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Res 24: 238-241
    • (1996) Nucleic Acids Res , vol.24 , pp. 238-241
    • Wingender, E.1    Dietze, P.2    Karas, H.3    Knüppel, R.4
  • 98
    • 42449103989 scopus 로고    scopus 로고
    • Coordination of gene expression between organellar and nuclear genomes
    • Woodson JD, Chory J (2008) Coordination of gene expression between organellar and nuclear genomes. Nat Rev Genet 9: 383-395
    • (2008) Nat Rev Genet , vol.9 , pp. 383-395
    • Woodson, J.D.1    Chory, J.2
  • 99
    • 0034056617 scopus 로고    scopus 로고
    • Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize
    • Yanagisawa S (2000) Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J 21: 281-288
    • (2000) Plant J , vol.21 , pp. 281-288
    • Yanagisawa, S.1
  • 100
    • 0031803817 scopus 로고    scopus 로고
    • Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression
    • Yanagisawa S, Sheen J (1998) Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression. Plant Cell 10: 75-89
    • (1998) Plant Cell , vol.10 , pp. 75-89
    • Yanagisawa, S.1    Sheen, J.2
  • 101
    • 68949155541 scopus 로고    scopus 로고
    • Differential gene expression profiles of the mitochondrial respiratory components in illuminated Arabidopsis leaves
    • Yoshida K, Noguchi K (2009) Differential gene expression profiles of the mitochondrial respiratory components in illuminated Arabidopsis leaves. Plant Cell Physiol 50: 1449-1462
    • (2009) Plant Cell Physiol , vol.50 , pp. 1449-1462
    • Yoshida, K.1    Noguchi, K.2
  • 102
    • 44349189837 scopus 로고    scopus 로고
    • Influence of chloroplastic photo-oxidative stress on mitochondrial alternative oxidase capacity and respiratory properties: A case study with Arabidopsis yellow variegated 2
    • Yoshida K, Watanabe C, Kato Y, Sakamoto W, Noguchi K (2008) Influence of chloroplastic photo-oxidative stress on mitochondrial alternative oxidase capacity and respiratory properties: a case study with Arabidopsis yellow variegated 2. Plant Cell Physiol 49: 592-603
    • (2008) Plant Cell Physiol , vol.49 , pp. 592-603
    • Yoshida, K.1    Watanabe, C.2    Kato, Y.3    Sakamoto, W.4    Noguchi, K.5
  • 103
    • 53349177756 scopus 로고    scopus 로고
    • Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana
    • Yu QB, Li G, Wang G, Sun JC, Wang PC, Wang C, Mi HL, Ma WM, Cui J, Cui YL, et al (2008) Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana. Cell Res 18: 1007-1019
    • (2008) Cell Res , vol.18 , pp. 1007-1019
    • Yu, Q.B.1    Li, G.2    Wang, G.3    Sun, J.C.4    Wang, P.C.5    Wang, C.6    Mi, H.L.7    Ma, W.M.8    Cui, J.9    Cui, Y.L.10
  • 104
    • 67849114236 scopus 로고    scopus 로고
    • PScan: Finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
    • Zambelli F, Pesole G, Pavesi G (2009) PScan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res 37: W247-W252
    • (2009) Nucleic Acids Res , vol.37
    • Zambelli, F.1    Pesole, G.2    Pavesi, G.3
  • 105
    • 6344221872 scopus 로고    scopus 로고
    • Insights into the survival of Chlamydomonas reinhardtii during sulfur starvation based on microarray analysis of gene expression
    • Zhang ZD, Shrager J, Jain M, Chang CW, Vallon O, Grossman AR (2004) Insights into the survival of Chlamydomonas reinhardtii during sulfur starvation based on microarray analysis of gene expression. Eukaryot Cell 3: 1331-1348
    • (2004) Eukaryot Cell , vol.3 , pp. 1331-1348
    • Zhang, Z.D.1    Shrager, J.2    Jain, M.3    Chang, C.W.4    Vallon, O.5    Grossman, A.R.6
  • 106
    • 1642547009 scopus 로고    scopus 로고
    • Profiling ethylene-regulated gene expression in Arabidopsis thaliana by microarray analysis
    • Zhong GY, Burns JK (2003) Profiling ethylene-regulated gene expression in Arabidopsis thaliana by microarray analysis. Plant Mol Biol 53: 117-131
    • (2003) Plant Mol Biol , vol.53 , pp. 117-131
    • Zhong, G.Y.1    Burns, J.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.