Dual temporal role of plastid sigma factor 6 in Arabidopsis development

Plant Physiology

Volumn 142, Issue 2, 2006, Pages 642-650

  Loschelder, Heike ^a   Schweer, Jennifer ^a   Link, Brigitte ^a   Link, Gerhard ^a  

^a RUHR UNIVERSITY BOCHUM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; CHLOROPHYLL; DNA; GENES;

MUTANTS; RETRANSFORMATION; SIGMA FACTORS; VEGETATIVE DEVELOPMENT;

PLANTS (BOTANY);

CHLOROPHYLLS; NUCLEIC ACIDS; PLANTS; PLASTIDS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 33750084713     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.106.085878     Document Type: Article

References (49)

1. Allison LA (2000) The role of sigma factors in plastid transcription. Biochimie 82: 537-548
2. Allison LA, Simon LD, Maliga P (1996) Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants. EMBO J 15: 2802-2809
3. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
4. Baginsky S, Link G (2005) Redox regulation of chloroplast gene expression. In B Demmig-Adams, Wl Adams, AK Mattoo, eds, Photoprotection, Photoinhibition, Gene Regulation, and Environment. Springer, Dordrecht, The Netherlands, pp 269-287
5. Baginsky S, Tiller K, Link G (1997) Transcription factor phosphorylation by a protein kinase associated with chloroplast RNA polymerase from mustard (Sinapis alba). Plant Mol Biol 34: 181-189
6. Baginsky S, Tiller K, Pfannschmidt T, Link G (1999) PTK, the chloroplast RNA polymerase-associated protein kinase from mustard (Sinapis alba), mediates redox control of plastid in vitro transcription. Plant Mol Biol 39: 1013-1023
7. Borukhov S, Nudler E (2003) RNA polymerase holoenzyme: structure, function and biological implications. Curr Opin Microbiol 6: 93-100
8. Cahoon AB, Stern DB (2001) Plastid transcription: a menage à trois. Trends Plant Sci 6: 45-46
9. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162: 156-159
10. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agro-bacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-744
11. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15
12. Favory J-J, Kobayashi M, Tanaka K, Peltier G, Kreis M, Valay J-G, Lerbs-Mache S (2005) Specific function of a plastid sigma factor for ndhF gene transcription. Nucleic Acids Res 33: 5991-5999
13. Fujiwara M, Nagashima A, Kanamaru K, Tanaka K, Takahashi H (2000) Three new nuclear genes, sigD, sigE and sigF, encoding putative plastid RNA polymerase sigma factors in Arabidopsis thaliana. FEBS Lett 481: 47-52
14. Gruber TM, Gross CA (2003) Multiple sigma subunits and the partitioning of bacterial transcription space. Annu Rev Microbiol 57: 441-466
15. Hajdukiewicz PTJ, Allison LA, Maliga P (1997) The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J 16: 4041-4048
16. Hakimi M-A, Privat I, Valay J-G, Lerbs-Mache S (2000) Evolutionary conservation of C-terminal domains of primary sigma 70-type transcription factors between plants and bacteria. J Biol Chem 275: 9215-9221
17. Hanaoka M, Kanamaru K, Takahashi H, Tanaka K (2003) Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase, in Arabidopsis thaliana. Nucleic Acids Res 31: 7090-7098
18. Hedtke B, Borner T, Weihe A (1997) Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science 277: 809-811
19. Höfgen R, Willmitzer L (1990) Biochemical and genetic analysis of different patatin isoforms expressed in various organs of potato (Solanum tuberosum). Plant Sci 66: 221-230
20. Homann A, Link G (2003) DNA-binding and transcription characteristics of three cloned sigma factors from mustard (Sinapis alba L.) suggest overlapping and distinct roles in plastid gene expression. Eur J Biochem 270: 1288-1300
21. Ishizaki Y, Tsunoyama Y, Hatano K, Ando K, Kato K, Shinmyo A, Kobori M, Takeba G, Nakahira Y, Shiina T (2005) A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons. Plant J 42: 133-144
22. Isono K, Shimizu M, Yoshimoto K, Niwa Y, Satoh K, Yokota A, Kobayashi H (1997) Leaf-specifically expressed genes for polypeptides destined for chloroplasts with domains of sigma 70 factors of bacterial RNA polymerases in Arabidopsis thaliana. Proc Natl Acad Sci USA 94: 14948-14953
23. Kanamaru K, Nagashima A, Fujiwara M, Shimada H, Shirano Y, Nakabayashi K, Shibata D, Tanaka K, Takahashi H (2001) An Arabidopsis sigma factor (SIG2)-dependent expression of plastid-encoded tRNAs in chloroplasts. Plant Cell Physiol 42: 1034-1043
24. Kanamaru K, Tanaka K (2004) Roles of chloroplast RNA polymerase sigma factors in chloroplast development and stress response in higher plants. Biosci Biotechnol Biochem 68: 2215-2223
25. Legen J, Kemp S, Krause K, Profanier B, Herrmann RG, Maier RM (2002) Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries. Plant J 31: 171-188
26. Liere K, Maliga P (2001) Plastid RNA polymerases in higher plants. In E-M Aro, B Andersson, eds, Regulation of Photosynthesis. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 29-49
27. Loschelder H, Homann A, Ogrzewalla K, Link G (2004) Proteomics-based sequence analysis of plant gene expression - the chloroplast transcription apparatus. Phytochemistry 65: 1785-1793
28. Maliga P (1998) Two plastid RNA polymerases of higher plants: an evolving story. Trends Plant Sci 3: 4-6
29. Martin W, Deusch O, Stawski N, Grünheit N, Goremykin V (2005) Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution. Trends Plant Sci 10: 203-209
30. Morikawa K, Shiina T, Murakami S, Toyoshima Y (2002) Novel nuclear-encoded proteins interacting with a plastid sigma factor, Sig1, in Ambidopsis thaliana. FEES Lett 514: 300-304
31. Nagashima A, Hanaoka M, Shikanai T, Fujiwara M, Kanamaru K, Takahashi H, Tanaka K (2004) The multiple-stress responsive plastid sigma factor, SIG5, directs activation of the psbD blue light-responsive promoter (BLRP) in Arabidopsis thaliana. Plant Cell Physiol 45: 357-368
32. Ogrzewalla K, Piotrowski M, Reinbothe S, Link G (2002) The plastid transcription kinase from mustard (Sinapis alba L.) - a nuclear-encoded CK2-type chloroplast enzyme with redox-sensitive function. Eur J Biochem 269: 3329-3337
33. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45
34. Pfalz J, Liere K, Kandlbinder A, Dietz KJ, Oelmüller R (2006) PTAC2,-6, and-12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Plant Cell 18: 176-197
35. Pfannschmidt T, Link G (1994) Separation of two classes of plastid DNA-dependent RNA polymerases that are differentially expressed in mustard (Sinapis alba L.) seedlings. Plant Mol Biol 25: 69-81
36. Pfannschmidt T, Ogrzewalla K, Baginsky S, Sickmann A, Meyer HE, Link G (2000) The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.): integration of a prokaryotic core into a larger complex with organelle-specific functions. Eur J Biochem 267: 253-261
37. Privat I, Hakimi MA, Buhot L, Favory J-J, Lerbs-Mache S (2003) Characterization of Arabidopsis plastid sigma-like transcription factors SIG1, SIG2 and SIG3. Plant Mol Biol 51: 385-399
38. Ramakers C, Ruijter JM, Lekanne Deprez RH, Moormann AFM (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339: 62-66
39. Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B (2003) An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol Biol 53: 247-259
40. Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 6: 283-290
41. Shiina T, Tsunoyama Y, Nakahira Y, Khan MS (2005) Plastid RNA polymerases, promoters, and transcription regulators in higher plants. Int Rev Cytol 244: 1-68
42. Sugita M, Sugiura M (1996) Regulation of gene expression in chloroplasts of higher plants. Plant Mol Biol 32: 315-326
43. Suzuki JY, Ytterberg AJ, Beardslee TA, Allison LA, Wijk KJ, Maliga P (2005) Affinity purification of the tobacco plastid RNA polymerase and in vitro reconstitution of the holoenzyme. Plant J 40: 164-172
44. Tanaka K, Tozawa Y, Mochizuki N, Shinozaki K, Nagatani A, Wakasa K, Takahashi H (1997) Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: evidence for the sigma factor heterogeneity in higher plant plastids. FEBS Lett 413: 309-313
45. Tiller K, Link G (1993a) Sigma-like transcription factors from mustard (Sinapis alba L.) etioplast are similar in size to, but functionally distinct from, their chloroplast counterparts. Plant Mol Biol 21: 503-513
46. Tiller K, Link G (1993b) Phosphorylation and dephosphorylation affect functional characteristics of chloroplast and etioplast transcription systems from mustard (Sinapis alba L.). EMBO J 12; 1745-1753
47. Toyoshima Y, Onda Y, Shiina T, Nakahira Y (2005) Plastid transcription in higher plants. CRC Crit Rev Plant Sci 24: 59-81
48. Tsunoyama Y, Ishizaki Y, Morikawa K, Kobori M, Nakahira Y, Takeba G, Toyoshima Y, Shiina T (2004) Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5. Proc Natl Acad Sci USA 101: 3304-3309
49. Yao JL, Roy-Chowdhury S, Allison LA (2003) AtSig5 is an essential nucleus-encoded Arabidopsis sigma-like factor. Plant Physiol 132: 739-747