메뉴 건너뛰기




Volumn 6, Issue 9, 2011, Pages

The cyst-dividing bacterium ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment

(25)  de Luca, Gilles a,b,c   Barakat, Mohamed a,b,c   Ortet, Philippe a,b,c   Fochesato, Sylvain a,b,c   Jourlin Castelli, Cécile d   Ansaldi, Mireille d   Py, Béatrice d   Fichant, Gwennaele e   Coutinho, Pedro M f   Voulhoux, Romé c   Bastien, Olivier b   Maréchal, Eric b   Henrissat, Bernard f   Quentin, Yves e   Noirot, Philippe g   Filloux, Alain c,i   Méjean, Vincent d   DuBow, Michael S b   Barras, Frédéric d   Barbe, Valérie h   more..

a IRFM   (France)
b CNRS   (France)
e UMR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

POLYHYDROXYALKANOIC ACID; TREHALOSE; BACTERIAL DNA; BACTERIAL POLYSACCHARIDE; FATTY ACID; MEMBRANE LIPID;

EID: 80052386975     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023784     Document Type: Article
Times cited : (35)

References (77)
  • 2
    • 0032941837 scopus 로고    scopus 로고
    • The Tatahouine diogenite: mineralogical and chemical effects of 63 years of terrestrial residence
    • Barrat JA, Gillet P, Lesourd M, Blichert-Toft J, Poupeau GR, (1999) The Tatahouine diogenite: mineralogical and chemical effects of 63 years of terrestrial residence. Meteorit Planet Sci 34: 91-97.
    • (1999) Meteorit Planet Sci , vol.34 , pp. 91-97
    • Barrat, J.A.1    Gillet, P.2    Lesourd, M.3    Blichert-Toft, J.4    Poupeau, G.R.5
  • 3
    • 0034652528 scopus 로고    scopus 로고
    • Terrestrial biological activity in the Tatahouine meteorite. Clues for the search of nanometric life traces in rocks
    • Gillet P, Barrat JA, Heulin T, Achouak W, Lesourd M, et al. (2000) Terrestrial biological activity in the Tatahouine meteorite. Clues for the search of nanometric life traces in rocks. Earth Plan Sci Lett 175: 161-167.
    • (2000) Earth Plan Sci Lett , vol.175 , pp. 161-167
    • Gillet, P.1    Barrat, J.A.2    Heulin, T.3    Achouak, W.4    Lesourd, M.5
  • 4
    • 0037360511 scopus 로고    scopus 로고
    • Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. nov., cyst-producing bacteria isolated from sub-desert soil in Tunisia
    • Heulin T, Barakat M, Christen R, Lesourd M, Sutra L, et al. (2003) Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. nov., cyst-producing bacteria isolated from sub-desert soil in Tunisia. Int J Syst Evol Microbiol 53: 589-594.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 589-594
    • Heulin, T.1    Barakat, M.2    Christen, R.3    Lesourd, M.4    Sutra, L.5
  • 5
    • 3142755160 scopus 로고    scopus 로고
    • Experimental colonization and alteration of orthopyroxene by the pleiomorphic bacteria Ramlibacter tataouinensis
    • Benzerara K, Barakat M, Menguy N, Guyot F, De Luca G, et al. (2004) Experimental colonization and alteration of orthopyroxene by the pleiomorphic bacteria Ramlibacter tataouinensis. Geomicrobiol J 21: 341-349.
    • (2004) Geomicrobiol J , vol.21 , pp. 341-349
    • Benzerara, K.1    Barakat, M.2    Menguy, N.3    Guyot, F.4    de Luca, G.5
  • 6
    • 28444453693 scopus 로고    scopus 로고
    • A morphological transition in the pleiomorphic bacterium Ramlibacter tataouinensis TTB310
    • Gommeaux M, Barakat M, Lesourd M, Thiery J, Heulin T, (2005) A morphological transition in the pleiomorphic bacterium Ramlibacter tataouinensis TTB310. Res Microbiol 156: 1026-1030.
    • (2005) Res Microbiol , vol.156 , pp. 1026-1030
    • Gommeaux, M.1    Barakat, M.2    Lesourd, M.3    Thiery, J.4    Heulin, T.5
  • 7
    • 33644941250 scopus 로고    scopus 로고
    • The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria
    • Chanal A, Chapon V, Benzerara K, Barakat M, Christen R, et al. (2006) The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria. Environ Microbiol 8: 514-525.
    • (2006) Environ Microbiol , vol.8 , pp. 514-525
    • Chanal, A.1    Chapon, V.2    Benzerara, K.3    Barakat, M.4    Christen, R.5
  • 8
    • 77957848173 scopus 로고    scopus 로고
    • Regulation of autotrophic CO2 fixation in the archaeon Thermoproteus neutrophilus
    • Ramos-Vera WH, Labonté V, Weiss M, Pauly J, Fuchs G, (2010) Regulation of autotrophic CO2 fixation in the archaeon Thermoproteus neutrophilus. J Bacteriol 192: 5329-5340.
    • (2010) J Bacteriol , vol.192 , pp. 5329-5340
    • Ramos-Vera, W.H.1    Labonté, V.2    Weiss, M.3    Pauly, J.4    Fuchs, G.5
  • 9
    • 34250697880 scopus 로고    scopus 로고
    • The phrA gene of Rhodobacter sphaeroides encodes a photolyase and is regulated by singlet oxygen and peroxide in a sigma(E)-dependent manner
    • Hendrischk AK, Braatsch S, Glaeser J, Klug G, (2007) The phrA gene of Rhodobacter sphaeroides encodes a photolyase and is regulated by singlet oxygen and peroxide in a sigma(E)-dependent manner. Microbiology 153: 1842-1851.
    • (2007) Microbiology , vol.153 , pp. 1842-1851
    • Hendrischk, A.K.1    Braatsch, S.2    Glaeser, J.3    Klug, G.4
  • 10
    • 27944434246 scopus 로고    scopus 로고
    • Recent structural insights into the expanding world of carbohydrate-active enzymes
    • Davies GJ, Gloster TM, Henrissat B, (2005) Recent structural insights into the expanding world of carbohydrate-active enzymes. Curr Opin Struct Biol 15: 637-645.
    • (2005) Curr Opin Struct Biol , vol.15 , pp. 637-645
    • Davies, G.J.1    Gloster, T.M.2    Henrissat, B.3
  • 11
  • 12
    • 0036716927 scopus 로고    scopus 로고
    • Glycogen metabolism loss: a common marker of parasitic behaviour in bacteria?
    • Henrissat B, Deleury E, Coutinho PM, (2002) Glycogen metabolism loss: a common marker of parasitic behaviour in bacteria? Trends Genet 18: 437-440.
    • (2002) Trends Genet , vol.18 , pp. 437-440
    • Henrissat, B.1    Deleury, E.2    Coutinho, P.M.3
  • 14
    • 0037113908 scopus 로고    scopus 로고
    • Bacterial membranes: the effects of chill storage and food processing. An overview
    • Russel NJ, (2002) Bacterial membranes: the effects of chill storage and food processing. An overview. Int J Food Microbiol 79: 27-34.
    • (2002) Int J Food Microbiol , vol.79 , pp. 27-34
    • Russel, N.J.1
  • 15
    • 0036904138 scopus 로고    scopus 로고
    • Body shaping under water stress: osmosensing and osmoregulation of solute transport in bacteria
    • Morbach S, Kramer R, (2002) Body shaping under water stress: osmosensing and osmoregulation of solute transport in bacteria. Chembiochem 3: 384-397.
    • (2002) Chembiochem , vol.3 , pp. 384-397
    • Morbach, S.1    Kramer, R.2
  • 16
    • 0028135644 scopus 로고
    • Aquaporins: water channel proteins of plant and animal cells
    • Chrispeels MJ, Agre P, (1994) Aquaporins: water channel proteins of plant and animal cells. Trends Biochem Sci 19: 421-425.
    • (1994) Trends Biochem Sci , vol.19 , pp. 421-425
    • Chrispeels, M.J.1    Agre, P.2
  • 17
    • 0033010261 scopus 로고    scopus 로고
    • Kup is the major K+ uptake system in Escherichia coli upon hyper-osmotic stress at a low pH
    • Trchounian A, Kobayashi H, (1999) Kup is the major K+ uptake system in Escherichia coli upon hyper-osmotic stress at a low pH. FEBS Lett 447: 144-148.
    • (1999) FEBS Lett , vol.447 , pp. 144-148
    • Trchounian, A.1    Kobayashi, H.2
  • 18
    • 0033913601 scopus 로고    scopus 로고
    • The Escherichia coli aquaporin-Z water channel
    • Calamita G, (2000) The Escherichia coli aquaporin-Z water channel. Mol Microbiol 37: 254-262.
    • (2000) Mol Microbiol , vol.37 , pp. 254-262
    • Calamita, G.1
  • 20
    • 0037428132 scopus 로고    scopus 로고
    • Role of a highly conserved bacterial protein in outer membrane protein assembly
    • Voulhoux R, Bos MP, Geurtsen J, Mols M, Tommassen J, (2003) Role of a highly conserved bacterial protein in outer membrane protein assembly. Science 299: 262-265.
    • (2003) Science , vol.299 , pp. 262-265
    • Voulhoux, R.1    Bos, M.P.2    Geurtsen, J.3    Mols, M.4    Tommassen, J.5
  • 21
    • 65349145827 scopus 로고    scopus 로고
    • Biogenesis of outer membranes in Gram-negative bacteria
    • Tokuda H, (2009) Biogenesis of outer membranes in Gram-negative bacteria. Biosci Biotechnol Biochem 73: 465-473.
    • (2009) Biosci Biotechnol Biochem , vol.73 , pp. 465-473
    • Tokuda, H.1
  • 22
    • 15744405122 scopus 로고    scopus 로고
    • Protein targeting by the bacterial twin-arginine translocation (Tat) pathway
    • Berks BC, Palmer T, Sargent F, (2005) Protein targeting by the bacterial twin-arginine translocation (Tat) pathway. Curr Opin Microbiol 8: 174-181.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 174-181
    • Berks, B.C.1    Palmer, T.2    Sargent, F.3
  • 23
    • 8844269404 scopus 로고    scopus 로고
    • The underlying mechanisms of type II protein secretion
    • Filloux A, (2004) The underlying mechanisms of type II protein secretion. Biochim Biophys Acta 1694: 163-79.
    • (2004) Biochim Biophys Acta , vol.1694 , pp. 163-179
    • Filloux, A.1
  • 24
    • 77957758935 scopus 로고    scopus 로고
    • The type II secretory system (T2SS) in Gram negative bacteria: a molecular nanomachine for secretion of Sec and Tat-dependent extracellular proteins
    • In: Wooldridge K, editors, Norfolk, Caister Academic Press
    • Michel GP, Voulhoux R, (2009) The type II secretory system (T2SS) in Gram negative bacteria: a molecular nanomachine for secretion of Sec and Tat-dependent extracellular proteins. In: Wooldridge K, editors. Bacterial secreted proteins Norfolk Caister Academic Press. Vol. 1 pp. 67-92.
    • (2009) Bacterial Secreted Proteins , vol.1 , pp. 67-92
    • Michel, G.P.1    Voulhoux, R.2
  • 25
    • 0035803406 scopus 로고    scopus 로고
    • Involvement of the twin-arginine translocation system in protein secretion via the type II pathway
    • Voulhoux R, Ball G, Ize B, Vasil ML, Lazdunski A, et al. (2001) Involvement of the twin-arginine translocation system in protein secretion via the type II pathway. EMBO J 20: 6735-6741.
    • (2001) EMBO J , vol.20 , pp. 6735-6741
    • Voulhoux, R.1    Ball, G.2    Ize, B.3    Vasil, M.L.4    Lazdunski, A.5
  • 26
    • 0036405357 scopus 로고    scopus 로고
    • Type IV pili and twitching motility
    • Mattick JS, (2002) Type IV pili and twitching motility. Annu Rev Microbiol 56: 289-314.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 289-314
    • Mattick, J.S.1
  • 27
    • 67650485218 scopus 로고    scopus 로고
    • Type IV Pili are required for virulence, twitching motility, and biofilm formation of Acidovorax avenae subsp. citrulli
    • Bahar O, Goffer T, Burdman S, (2009) Type IV Pili are required for virulence, twitching motility, and biofilm formation of Acidovorax avenae subsp. citrulli. Mol Plant Microbe Interact 22: 909-920.
    • (2009) Mol Plant Microbe Interact , vol.22 , pp. 909-920
    • Bahar, O.1    Goffer, T.2    Burdman, S.3
  • 28
    • 51649122042 scopus 로고    scopus 로고
    • Identification and characterization of genes underlying chitinolysis in Collimonas fungivorans Ter331
    • Fritsche K, de Boer W, Gerards S, van den Berg M, van Veen JA, et al. (2008) Identification and characterization of genes underlying chitinolysis in Collimonas fungivorans Ter331. FEMS Microbiol Ecol 66: 123-135.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 123-135
    • Fritsche, K.1    de Boer, W.2    Gerards, S.3    van den Berg, M.4    van Veen, J.A.5
  • 29
    • 15944409588 scopus 로고    scopus 로고
    • Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective
    • Pallen MJ, Beatson SA, Bailey CM, (2005) Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective. FEMS Microbiol Rev 29: 201-229.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 201-229
    • Pallen, M.J.1    Beatson, S.A.2    Bailey, C.M.3
  • 30
    • 69949158186 scopus 로고    scopus 로고
    • Sculpting the bacterial cell
    • Margolin W, (2009) Sculpting the bacterial cell. Curr Biol 19: R812-822.
    • (2009) Curr Biol , vol.19
    • Margolin, W.1
  • 31
    • 9544237144 scopus 로고    scopus 로고
    • Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
    • Perez-Rueda E, Collado-Vides J, Segovia L, (2004) Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Comput Biol Chem 28: 341-350.
    • (2004) Comput Biol Chem , vol.28 , pp. 341-350
    • Perez-Rueda, E.1    Collado-Vides, J.2    Segovia, L.3
  • 32
    • 15944379232 scopus 로고    scopus 로고
    • The many faces of the helix-turn-helix domain: transcription regulation and beyond
    • Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM, (2005) The many faces of the helix-turn-helix domain: transcription regulation and beyond. FEMS Microbiol Rev 29: 231-262.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 231-262
    • Aravind, L.1    Anantharaman, V.2    Balaji, S.3    Babu, M.M.4    Iyer, L.M.5
  • 33
    • 58149192191 scopus 로고    scopus 로고
    • General trends in the evolution of prokaryotic transcriptional regulatory networks
    • Babu MM, Balaji S, Aravind L, (2007) General trends in the evolution of prokaryotic transcriptional regulatory networks. Genome Dyn 3: 66-80.
    • (2007) Genome Dyn , vol.3 , pp. 66-80
    • Babu, M.M.1    Balaji, S.2    Aravind, L.3
  • 34
    • 23944523895 scopus 로고    scopus 로고
    • A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts
    • Galperin MY, (2005) A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol 5: 35.
    • (2005) BMC Microbiol , vol.5 , pp. 35
    • Galperin, M.Y.1
  • 35
    • 68049092764 scopus 로고    scopus 로고
    • P2CS: a two-component system resource for prokaryotic signal transduction research
    • Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Mejean V, et al. (2009) P2CS: a two-component system resource for prokaryotic signal transduction research. BMC Genomics 10: 315.
    • (2009) BMC Genomics , vol.10 , pp. 315
    • Barakat, M.1    Ortet, P.2    Jourlin-Castelli, C.3    Ansaldi, M.4    Mejean, V.5
  • 36
    • 78651282059 scopus 로고    scopus 로고
    • P2CS: a database of prokaryotic two-component systems
    • Barakat M, Ortet P, Whitworth DE, (2011) P2CS: a database of prokaryotic two-component systems. Nucleic Acids Res 39 (Database issue): D771-6.
    • (2011) Nucleic Acids Res , vol.39 , Issue.Database issue , pp. 771-776
    • Barakat, M.1    Ortet, P.2    Whitworth, D.E.3
  • 38
    • 0032990441 scopus 로고    scopus 로고
    • PAS domains: internal sensors of oxygen, redox potential, and light
    • Taylor BL, Zhulin IB, (1999) PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol Mol Biol Rev 63: 479-506.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 479-506
    • Taylor, B.L.1    Zhulin, I.B.2
  • 39
    • 77749327485 scopus 로고    scopus 로고
    • Getting in the loop: regulation of development in Caulobacter crescentus
    • Curtis PD, Brun YV, (2010) Getting in the loop: regulation of development in Caulobacter crescentus. Microbiol Mol Biol Rev 74: 13-41.
    • (2010) Microbiol Mol Biol Rev , vol.74 , pp. 13-41
    • Curtis, P.D.1    Brun, Y.V.2
  • 40
    • 0035980822 scopus 로고    scopus 로고
    • Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120
    • Kaneko T, Nakamura Y, Wolk CP, Kuritz T, Sasamoto S, et al. (2001) Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res 8: 205-213.
    • (2001) DNA Res , vol.8 , pp. 205-213
    • Kaneko, T.1    Nakamura, Y.2    Wolk, C.P.3    Kuritz, T.4    Sasamoto, S.5
  • 41
    • 36248934750 scopus 로고    scopus 로고
    • Photosensing in chemotrophic, non-phototrophic bacteria: let there be light sensing too
    • van der Horst MA, Key J, Hellingwerf KJ, (2007) Photosensing in chemotrophic, non-phototrophic bacteria: let there be light sensing too. Trends Microbiol 15: 554-562.
    • (2007) Trends Microbiol , vol.15 , pp. 554-562
    • van der Horst, M.A.1    Key, J.2    Hellingwerf, K.J.3
  • 42
    • 48349141422 scopus 로고    scopus 로고
    • Bacteriophytochromes in anoxygenic photosynthetic bacteria
    • Giraud E, Verméglio A, (2008) Bacteriophytochromes in anoxygenic photosynthetic bacteria. Photosynth Res 97: 141-153.
    • (2008) Photosynth Res , vol.97 , pp. 141-153
    • Giraud, E.1    Verméglio, A.2
  • 43
    • 36049013726 scopus 로고    scopus 로고
    • Enhancement of a sigma(B)-dependent stress response in Bacillus subtilis by light via YtvA photoreceptor
    • Suzuki N, Takaya N, Hoshino T, Nakamura A, (2007) Enhancement of a sigma(B)-dependent stress response in Bacillus subtilis by light via YtvA photoreceptor. J Gen Appl Microbiol 53: 81-88.
    • (2007) J Gen Appl Microbiol , vol.53 , pp. 81-88
    • Suzuki, N.1    Takaya, N.2    Hoshino, T.3    Nakamura, A.4
  • 44
    • 24644477536 scopus 로고    scopus 로고
    • Structure of a bacterial BLUF photoreceptor: insights into blue light-mediated signal transduction
    • Jung A, Domratcheva T, Tarutina M, Wu Q, Ko WH, et al. (2005) Structure of a bacterial BLUF photoreceptor: insights into blue light-mediated signal transduction. Proc Natl Acad Sci U S A 102: 12350-12355.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 12350-12355
    • Jung, A.1    Domratcheva, T.2    Tarutina, M.3    Wu, Q.4    Ko, W.H.5
  • 45
    • 0033601199 scopus 로고    scopus 로고
    • Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria
    • Davis SJ, Vener AV, Vierstra RD, (1999) Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria. Science 286: 2517-2520.
    • (1999) Science , vol.286 , pp. 2517-2520
    • Davis, S.J.1    Vener, A.V.2    Vierstra, R.D.3
  • 46
    • 0032483510 scopus 로고    scopus 로고
    • Expression of a gene cluster kaiABC as a circadian feedback process in Cyanobacteria
    • Ishiura M, Kutsuna S, Aoki S, Iwasaki H, Andersson CR, et al. (1998) Expression of a gene cluster kaiABC as a circadian feedback process in Cyanobacteria. Science 281: 1519-1523.
    • (1998) Science , vol.281 , pp. 1519-1523
    • Ishiura, M.1    Kutsuna, S.2    Aoki, S.3    Iwasaki, H.4    Andersson, C.R.5
  • 47
    • 44849108911 scopus 로고    scopus 로고
    • Lego clocks: building a clock from parts
    • Brunner M, Simons MJ, Merrow M, (2008) Lego clocks: building a clock from parts. Genes Dev 22: 1422-1426.
    • (2008) Genes Dev , vol.22 , pp. 1422-1426
    • Brunner, M.1    Simons, M.J.2    Merrow, M.3
  • 48
    • 55349084753 scopus 로고    scopus 로고
    • Structural insights into a circadian oscillator
    • Johnson CH, Egli M, Stewart PL, (2008) Structural insights into a circadian oscillator. Science 322: 697-701.
    • (2008) Science , vol.322 , pp. 697-701
    • Johnson, C.H.1    Egli, M.2    Stewart, P.L.3
  • 49
    • 50849102663 scopus 로고    scopus 로고
    • A cyanobacterial circadian clockwork
    • Johnson CH, Mori T, Xu Y, (2008) A cyanobacterial circadian clockwork. Curr Biol 18: R816-R825.
    • (2008) Curr Biol , vol.18 , pp. 816-825
    • Johnson, C.H.1    Mori, T.2    Xu, Y.3
  • 50
    • 56949083657 scopus 로고    scopus 로고
    • How a cyanobacterium tells time
    • Dong G, Golden SS, (2008) How a cyanobacterium tells time. Curr Opin Microbiol 11: 541-546.
    • (2008) Curr Opin Microbiol , vol.11 , pp. 541-546
    • Dong, G.1    Golden, S.S.2
  • 52
    • 78349307885 scopus 로고    scopus 로고
    • Simplicity and complexity in the cyanobacterial circadian clock mechanism
    • Dong G, Kim YI, Golden SS, (2010) Simplicity and complexity in the cyanobacterial circadian clock mechanism. Curr Opin Genet Dev 20: 619-625.
    • (2010) Curr Opin Genet Dev , vol.20 , pp. 619-625
    • Dong, G.1    Kim, Y.I.2    Golden, S.S.3
  • 53
    • 43249099038 scopus 로고    scopus 로고
    • Genome streamlining results in loss of robustness of the circadian clock in the marine cyanobacterium Prochlorococcus marinus PCC 9511
    • Holtzendorff J, Partensky F, Mella D, Lennon JF, Hess WR, et al. (2008) Genome streamlining results in loss of robustness of the circadian clock in the marine cyanobacterium Prochlorococcus marinus PCC 9511. J Biol Rhythms 23: 187-199.
    • (2008) J Biol Rhythms , vol.23 , pp. 187-199
    • Holtzendorff, J.1    Partensky, F.2    Mella, D.3    Lennon, J.F.4    Hess, W.R.5
  • 55
    • 68949163865 scopus 로고    scopus 로고
    • The rolex and the hourglass: a simplified circadian clock in Prochlorococcus?
    • Mullineaux CW, Stanewsky R, (2009) The rolex and the hourglass: a simplified circadian clock in Prochlorococcus? J Bacteriol 191: 5333-5335.
    • (2009) J Bacteriol , vol.191 , pp. 5333-5335
    • Mullineaux, C.W.1    Stanewsky, R.2
  • 58
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269: 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3    Clayton, R.A.4    Kirkness, E.F.5
  • 59
    • 46349095831 scopus 로고    scopus 로고
    • Comparative analysis of Acinetobacters: three genomes for three lifestyles
    • Vallenet D, Nordmann P, Barbe V, Poirel L, Mangenot S, et al. (2008) Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS ONE 3: e1805.
    • (2008) PLoS ONE , vol.3
    • Vallenet, D.1    Nordmann, P.2    Barbe, V.3    Poirel, L.4    Mangenot, S.5
  • 60
    • 0043122995 scopus 로고    scopus 로고
    • FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences
    • Schiex T, Gouzy J, Moisan A, de Oliveira Y, (2003) FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences. Nucleic Acids Res 31: 3738-3741.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3738-3741
    • Schiex, T.1    Gouzy, J.2    Moisan, A.3    de Oliveira, Y.4
  • 63
  • 64
    • 3042830466 scopus 로고    scopus 로고
    • Analysis of the compositional biases in Plasmodium falciparum genome and proteome using Arabidopsis thaliana as a reference
    • Bastien O, Lespinats S, Roy S, Métayer K, Fertil B, et al. (2004) Analysis of the compositional biases in Plasmodium falciparum genome and proteome using Arabidopsis thaliana as a reference. Gene 336: 163-173.
    • (2004) Gene , vol.336 , pp. 163-173
    • Bastien, O.1    Lespinats, S.2    Roy, S.3    Métayer, K.4    Fertil, B.5
  • 65
    • 1542505031 scopus 로고    scopus 로고
    • Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics
    • Bastien O, Aude JC, Roy S, Maréchal E, (2004) Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics. Bioinformatics 20: 534-537.
    • (2004) Bioinformatics , vol.20 , pp. 534-537
    • Bastien, O.1    Aude, J.C.2    Roy, S.3    Maréchal, E.4
  • 66
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF, Waterman MS, (1981) Identification of common molecular subsequences. J Mol Biol 147: 195-197.
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 67
    • 0038018596 scopus 로고    scopus 로고
    • Transient increase of phosphatidylcholine in plant cells in response to phosphate deprivation
    • Jouhet J, Maréchal E, Bligny R, Joyard J, Block MA, (2003) Transient increase of phosphatidylcholine in plant cells in response to phosphate deprivation. FEBS Lett 544: 63-68.
    • (2003) FEBS Lett , vol.544 , pp. 63-68
    • Jouhet, J.1    Maréchal, E.2    Bligny, R.3    Joyard, J.4    Block, M.A.5
  • 69
    • 28444469149 scopus 로고    scopus 로고
    • Evolutionary and mechanistic relationships between glycosidases acting on alpha- and beta-bonds
    • Stam MR, Blanc E, Coutinho PM, Henrissat B, (2005) Evolutionary and mechanistic relationships between glycosidases acting on alpha- and beta-bonds. Carbohydr Res 340: 2728-2734.
    • (2005) Carbohydr Res , vol.340 , pp. 2728-2734
    • Stam, M.R.1    Blanc, E.2    Coutinho, P.M.3    Henrissat, B.4
  • 70
    • 2542601548 scopus 로고    scopus 로고
    • Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
    • Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, et al. (2004) Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol 22: 695-700.
    • (2004) Nat Biotechnol , vol.22 , pp. 695-700
    • Martinez, D.1    Larrondo, L.F.2    Putnam, N.3    Gelpke, M.D.4    Huang, K.5
  • 71
    • 0035984484 scopus 로고    scopus 로고
    • Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes
    • Quentin Y, Chabalier J, Fichant G, (2002) Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes. Comput Chem 26: 447-457.
    • (2002) Comput Chem , vol.26 , pp. 447-457
    • Quentin, Y.1    Chabalier, J.2    Fichant, G.3
  • 72
    • 0346494926 scopus 로고    scopus 로고
    • TransportDB: a relational database of cellular membrane transport systems
    • Ren Q, Kang KH, Paulsen IT, (2004) TransportDB: a relational database of cellular membrane transport systems. Nucleic Acids Res 32 (Database issue): D284-288.
    • (2004) Nucleic Acids Res , vol.32 , Issue.Database issue , pp. 284-288
    • Ren, Q.1    Kang, K.H.2    Paulsen, I.T.3
  • 74
    • 48249102000 scopus 로고    scopus 로고
    • Phylogeny.fr: robust phylogenetic analysis for the non-specialist
    • Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, et al. (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36 (Web Server issue): W465-469.
    • (2008) Nucleic Acids Res , vol.36 , Issue.Web Server issue , pp. 465-469
    • Dereeper, A.1    Guignon, V.2    Blanc, G.3    Audic, S.4    Buffet, S.5
  • 75
    • 0344321891 scopus 로고    scopus 로고
    • Origin and evolution of circadian clock genes in prokaryotes
    • Dvornyk V, Vinogradova O, Nevo E, (2003) Origin and evolution of circadian clock genes in prokaryotes. Proc Natl Acad Sci U S A 100: 2495-2500.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 2495-2500
    • Dvornyk, V.1    Vinogradova, O.2    Nevo, E.3
  • 76
    • 0042065283 scopus 로고    scopus 로고
    • Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein
    • Hinsa SM, Espinosa-Urgel M, Ramos JL, O'Toole GA, (2003) Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein. Mol Microbiol 49: 905-918.
    • (2003) Mol Microbiol , vol.49 , pp. 905-918
    • Hinsa, S.M.1    Espinosa-Urgel, M.2    Ramos, J.L.3    O'Toole, G.A.4
  • 77
    • 59749105974 scopus 로고    scopus 로고
    • RecA family proteins in archaea: RadA and its cousins
    • Haldenby S, White MF, Allers T, (2009) RecA family proteins in archaea: RadA and its cousins. Biochem Soc Trans 37: 102-107.
    • (2009) Biochem Soc Trans , vol.37 , pp. 102-107
    • Haldenby, S.1    White, M.F.2    Allers, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.