메뉴 건너뛰기




Volumn 113, Issue 3, 2011, Pages 483-489

Effects of postmortem interval and preservation method on rna isolated from field-preserved avian tissues

Author keywords

Gene expression; Genetic resources; MRNA; Natural history collections; Postmortem interval; Transcriptomics

Indexed keywords

AVES; PASSER DOMESTICUS;

EID: 80052356807     PISSN: 00105422     EISSN: None     Source Type: Journal    
DOI: 10.1525/cond.2011.100201     Document Type: Article
Times cited : (16)

References (58)
  • 1
    • 34250674565 scopus 로고    scopus 로고
    • Evolution of duplicate gene expression in polyploid and hybrid plants
    • DOI 10.1093/jhered/esl061
    • Adams, K. L. 2007. Evolution of duplicate gene expression in polyploid and hybrid plants. Journal of Heredity 98: 136-141. (Pubitemid 47356030)
    • (2007) Journal of Heredity , vol.98 , Issue.2 , pp. 136-141
    • Adams, K.L.1
  • 2
    • 0345257783 scopus 로고    scopus 로고
    • Chipping away at the chip bias: RNA degradation in microarray analysis [2]
    • DOI 10.1038/ng1203-292
    • Auer, H. , S. Lyianarachchi, D. Newsom, M. I. Klisovic, U. Marcucci, and K. Kornacker. 2003. Chipping away at the chip bias: RNA degradation in microarray analysis. Nature Genetics 35: 292-293. (Pubitemid 37486906)
    • (2003) Nature Genetics , vol.35 , Issue.4 , pp. 292-293
    • Auer, H.1    Lyianarachchi, S.2    Newsom, D.3    Klisovic, M.I.4    Marcucci, U.5    Kornacker, K.6
  • 4
    • 38949143604 scopus 로고    scopus 로고
    • Long-term stability of RNA in post-mortem bovineskeletal muscle, liver and subcutaneousadipose tissues
    • Bahar, B. , F. J. Monahan, A. P. Moloney, O. Schmidt, D. E. MacHugh, and T. Sweeney. 2007. Long-term stability of RNA in post-mortem bovineskeletal muscle, liver and subcutaneousadipose tissues. BMC Molecular Biology 8: 108.
    • (2007) BMC Molecular Biology , vol.8 , pp. 108
    • Bahar, B.1    Monahan, F.J.2    Moloney, A.P.3    Schmidt, O.4    MacHugh, D.E.5    Sweeney, T.6
  • 6
    • 0344862096 scopus 로고    scopus 로고
    • Quantification of RNA degradation by semi-quantitative duplex and competitive RT-PCR: A possible indicator of the age of bloodstains?
    • DOI 10.1016/j.forsciint.2003.09.008
    • Bauer, M. , S. Polzin, and D. Patzelt. 2003. Quantification of RNA degradation by semi-quantitative duplex and competitive RTPCR: a possible indicator of the age of bloodstains? Forensic Science International 138: 94-103. (Pubitemid 37464737)
    • (2003) Forensic Science International , vol.138 , Issue.1-3 , pp. 94-103
    • Bauer, M.1    Polzin, S.2    Patzelt, D.3
  • 7
    • 84855679762 scopus 로고    scopus 로고
    • Postmortem interval effect on RNA and gene expression in human brain tissue
    • doi: 10. 1007/s10561-010-9210-8
    • Birdsill, A. C. , D. G. Walker, L. Lue, L. I. Sue, and T. G. Beach. 2010. Postmortem interval effect on RNA and gene expression in human brain tissue. Celland Tissue Banking, doi: 10. 1007/s10561-010-9210-8.
    • (2010) Celland Tissue Banking
    • Birdsilla, C.1    Walker, D.G.2    Lue, L.3    Sue, L.I.4    Beach, T.G.5
  • 9
    • 77957592797 scopus 로고    scopus 로고
    • Prospective collection of tissue samples obtainedat autopsy in children with diffuse intrinsic pontine glioma
    • Broniscer, A. , J. N. Baker, S. J. Baker, S. N. Chi, J. R. Geyer, E. B . Morris, and A. Gajjar. 2010. Prospective collection of tissue samples obtainedat autopsy in children with diffuse intrinsic pontine glioma. Cancer 116: 4632
    • (2010) Cancer , vol.116 , pp. 4632
    • Broniscer, A.1    Baker, J.N.2    Baker, S.J.3    Chi, S.N.4    Geyer, J.R.5    Morris, E.B.6    Gajjar, A.7
  • 10
    • 70349307542 scopus 로고    scopus 로고
    • Hemoglobin transcript abundance in a cDNA library from bone marrow of Crested Ducks (Lophonetta specularioides) the Peruvian highandes
    • Bulgarella, M. , N. C. Stewart, V. B. Fedorov, A. V. Moore, and K. G. McCracken. 2009. Hemoglobin transcript abundance in a cDNA library from bone marrow of Crested Ducks (Lophonetta specularioides) in the Peruvian highandes. Auk 126: 666-672.
    • (2009) Auk , vol.126 , pp. 666-672
    • Bulgarella, M.1    Stewart, N.C.2    Fedorov, V.B.3    Moore, A.V.4    McCracken, K.G.5
  • 11
    • 0034898019 scopus 로고    scopus 로고
    • Cone opsin genes of African cichlid fishes: Tuning spectral sensitivity by differential gene expression
    • Carleton, K. L. , and T. D. Kocher. 2001. Cone opsin genes of African cichlid fishes: tuning spectral sensitivity by differential gene expression. Molecular Biology and Evolution 18: 1540
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1540
    • Carleton, K.L.1    Kocher, T.D.2
  • 12
    • 53749105073 scopus 로고    scopus 로고
    • Transcriptomic variation and plasticity in Rufous-collared Sparrows (Zonotrichia capensis) along an altitudinal gradient
    • Cheviron, Z. A. , A. Whitehead, and R. T. Brumfield. 2008. Transcriptomic variation and plasticity in Rufous-collared Sparrows (Zonotrichia capensis) along an altitudinal gradient. Molecular Ecology 17: 4556
    • (2008) Molecular Ecology , vol.17 , pp. 4556
    • Cheviron, Z.A.1    Whitehead, A.2    Brumfield, R.T.3
  • 13
    • 38549171520 scopus 로고    scopus 로고
    • Assessing RNA quality in postmortem human brain tissue
    • DOI 10.1016/j.yexmp.2007.08.019, PII S0014480007001141
    • Chevyreva, I. , R. L. M. Faull, C. R. Green, and L. F. B. Nicholson. 2008. Assessing RNA quality in postmortem human brain tissue. Experimentaland Molecular Pathology 84: 71-77. (Pubitemid 351163260)
    • (2008) Experimental and Molecular Pathology , vol.84 , Issue.1 , pp. 71-77
    • Chevyreva, I.1    Faull, R.L.M.2    Green, C.R.3    Nicholson, L.F.B.4
  • 16
    • 23044507244 scopus 로고    scopus 로고
    • Future of avian genetic resources collections: Archives of evolutionary and environmental history
    • Edwards, S. V. , S. Birks, R. T. Brumfield, and R. Hanner. 2005. The future of avian genetic resources collections: archives of evolutionary and environmental history. Auk 122: 979-984. (Pubitemid 41060671)
    • (2005) Auk , vol.122 , Issue.3 , pp. 979-984
    • Edwards, S.V.1    Birks, S.2    Brumfield, R.T.3    Hanner, R.4
  • 19
    • 0023595211 scopus 로고
    • Stability of protein and mRNA in human postmortem liver-analysis by two-dimensional gel electrophoresis
    • DOI 10.1016/0009-8981(87)90130-6
    • Finger, J. M. , J. F. B. Mercer, R. G. H. Cotton, and D. M. Danks. 1987. Stability of protein and mRNA in human postmortem liveranalysis by two-dimensional gel electrophoresis. Clinica Chimica Acta 170: 209-218. (Pubitemid 18014975)
    • (1987) Clinica Chimica Acta , vol.170 , Issue.2-3 , pp. 209-218
    • Finger, J.M.1    Mercer, J.F.B.2    Cotton, R.G.H.3    Danks, D.M.4
  • 21
    • 52049111203 scopus 로고    scopus 로고
    • Evaluation of post mortem stability of porcineskeletal muscle RNA
    • Fontanesi, L. , M. Colombo, F. Beretti, and V. Russo. 2008. Evaluation of post mortem stability of porcineskeletal muscle RNA. Meat Science 80: 1345
    • (2008) Meat Science , vol.80 , pp. 1345
    • Fontanesi, L.1    Colombo, M.2    Beretti, F.3    Russo, V.4
  • 22
    • 40849094053 scopus 로고    scopus 로고
    • The effect of sample type, temperature and RNAlaterTM on the stability of avian influenza virus RNA
    • Forster, J. L. , V. B. Harkin, D. A. Graham, and S. J. McCullough. 2008. The effect of sample type, temperature and RNAlaterTM on the stability of avian influenza virus RNA. Journal of Virological Methods 149: 190-194.
    • (2008) Journal of Virological Methods , vol.149 , pp. 190-194
    • Forster, J.L.1    Harkin, V.B.2    Graham, D.A.3    McCullough, S.J.4
  • 23
    • 34249809719 scopus 로고    scopus 로고
    • A time course study demonstrating RNA stability in postmortem skin
    • DOI 10.1016/j.yexmp.2006.11.001, PII S0014480006001316
    • Gopee, N. V. , and P. C. Howard. 2007. A time course study demonstrating RNA stability in postmortem skin. Experimentaland Molecular Pathology 83: 4-10. (Pubitemid 46850723)
    • (2007) Experimental and Molecular Pathology , vol.83 , Issue.1 , pp. 4-10
    • Gopee, N.V.1    Howard, P.C.2
  • 24
    • 33846931145 scopus 로고    scopus 로고
    • Successful RNA extraction from various human postmortem tissues
    • DOI 10.1007/s00414-006-0131-9
    • Heinrich, M. , K. Matt, S. Lutz-Bonengel, and U. Schmidt. 2007. Successful RNA extraction from various human postmortem tissues. International Journal of Legal Medicine 121: 136-142. (Pubitemid 46233194)
    • (2007) International Journal of Legal Medicine , vol.121 , Issue.2 , pp. 136-142
    • Heinrich, M.1    Matt, K.2    Lutz-Bonengel, S.3    Schmidt, U.4
  • 25
    • 0013874005 scopus 로고
    • Temperature regulation and metabolic rhythms in populations of House Sparrow Passer domesticus
    • Hudson, J. W. , and S. L. Kimzey. 1966. Temperature regulation and metabolic rhythms in populations of House Sparrow Passer domesticus. Comparative Biochemistry and Physiology 17: 203-217.
    • (1966) Comparative Biochemistry and Physiology , vol.17 , pp. 203-217
    • Hudson, J.W.1    Kimzey, S.L.2
  • 26
    • 33845956888 scopus 로고    scopus 로고
    • RNA quality and gene expression analysis of ovarian tumor tissue undergoing repeated thaw-freezing
    • DOI 10.1016/j.yexmp.2006.05.004, PII S001448000600061X
    • Jochumsen, K. M. , Q. H. Tan, J. Dahlgaard, T. A. Kruse, and O. Mogensen. 2007. RNA quality and gene expression analysis of ovarian tumor tissue undergoing repeated thaw-freezing. Experimentaland Molecular Pathology 82: 95-102. (Pubitemid 46038267)
    • (2007) Experimental and Molecular Pathology , vol.82 , Issue.1 , pp. 95-102
    • Jochumsen, K.M.1    Tan, Q.2    Dahlgaard, J.3    Kruse, T.A.4    Mogensen, O.5
  • 27
    • 0022491546 scopus 로고
    • Extensive postmortem stability of RNA from rat and human brain
    • Johnson, S. A. , D. G. Morgan, and C. E. Finch. 1986. Extensive postmortem stability of RNA from rat and human brain. Journal of Neuroscience Research 16: 267-280. (Pubitemid 16050423)
    • (1986) Journal of Neuroscience Research , vol.16 , Issue.1 , pp. 267-280
    • Johnson, S.A.1    Morgan, D.G.2    Finch, C.E.3
  • 28
    • 46349110517 scopus 로고    scopus 로고
    • Changes in brain gene expression during migration in the Whitecrowned Sparrow
    • Jones, S. , M. Pfister-Genskow, C. Cirelli, and R. M. Benca. 2008. Changes in brain gene expression during migration in the Whitecrowned Sparrow. Brain Research Bulletin 76: 536-544.
    • (2008) Brain Research Bulletin , vol.76 , pp. 536-544
    • Jones, S.1    Pfister-Genskow, M.2    Cirelli, C.3    Benca, R.M.4
  • 29
    • 18844406575 scopus 로고    scopus 로고
    • Stability of RNA isolated from human trabecular bone at post-mortem and surgery
    • DOI 10.1016/j.bbadis.2005.03.005, PII S0925443905000256
    • Kuliwaba, J. S. , N. L. Fazzalari, and D. M. Findlay. 2005. Stability of RNA isolated from human trabecular bone at post-mortemand surgery. Biochimicaet Biophysica Acta-Molecular Basis of Disease 1740: 1-11. (Pubitemid 40692692)
    • (2005) Biochimica et Biophysica Acta - Molecular Basis of Disease , vol.1740 , Issue.1 , pp. 1-11
    • Kuliwaba, J.S.1    Fazzalari, N.L.2    Findlay, D.M.3
  • 31
    • 33645503260 scopus 로고    scopus 로고
    • Microarray analysis reveals differential gene expression in hybrid sunflower species
    • Lai, Z. , B. L. Gross, Y. Zou, J. Andrews, and L. H. Rieseberg. 2006. Microarray analysis reveals differential gene expression in hybrid sunflower species. Molecular Ecology 15: 1213-1227.
    • (2006) Molecular Ecology , vol.15 , pp. 1213-1227
    • Lai, Z.1    Gross, B.L.2    Zou, Y.3    Andrews, J.4    Rieseberg, L.H.5
  • 32
    • 35548955944 scopus 로고    scopus 로고
    • Genome clashes in hybrids: Insights from gene expression
    • DOI 10.1038/sj.hdy.6801045, PII 6801045
    • Landry, C. R. , D. L. Hartl, and J. M. Ranz. 2007. Genome clashes in hybrids: insights from gene expression. Heredity 99: 483-493. (Pubitemid 350006183)
    • (2007) Heredity , vol.99 , Issue.5 , pp. 483-493
    • Landry, C.R.1    Hartl, D.L.2    Ranz, J.M.3
  • 33
    • 76249084794 scopus 로고    scopus 로고
    • Prospects for the use of next-generation sequencing methods in ornithology
    • Lerner, H. R. L. , and R. C. Fleischer. 2010. Prospects for the use of next-generation sequencing methods in ornithology. Auk 127: 4-15.
    • (2010) Auk , vol.127 , pp. 4-15
    • Lerner, H.R.L.1    Fleischer, R.C.2
  • 35
    • 0038147058 scopus 로고    scopus 로고
    • Stability of RNA from the retina and retinal pigment epithelium in a porcine model simulating human eye bank conditions
    • Malik, K. F. , C. D. Chen, and T. W. Olsen. 2003. Stability of RNA from the retina and retinal pigment epithelium in a porcine model simulating human eye bank conditions. Investigative Ophthalmology & Visual Science 44: 2730
    • (2003) Investigative Ophthalmology & Visual Science , vol.44 , pp. 2730
    • Malik, K.F.1    Chen, C.D.2    Olsen, T.W.3
  • 36
    • 0032472778 scopus 로고    scopus 로고
    • Postmortem stability of total RNA isolated from rabbit ligament, tendon and cartilage
    • DOI 10.1016/S0304-4165(97)00094-9, PII S0304416597000949
    • Marchuk, L. , P. Sciore, C. Reno, C. B. Frank, and D. A. Hart. 1998. Postmortem stability of total RNA isolated from rabbit ligament, tendon and cartilage. Biochimicaet Biophysica Acta-General Subjects 1379: 171-177. (Pubitemid 28252892)
    • (1998) Biochimica et Biophysica Acta - General Subjects , vol.1379 , Issue.2 , pp. 171-177
    • Marchuk, L.1    Sciore, P.2    Reno, C.3    Frank, C.B.4    Hart, D.A.5
  • 37
    • 30944440066 scopus 로고    scopus 로고
    • Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens
    • DOI 10.1038/labinvest.3700372, PII 3700372
    • Micke, P. , M. Ohshima, S. Tahmasebpoor, Z. P. Ren, A. Ostman, F. Ponten, and J. Botling. 2006. Biobanking of fresh frozentissue: RNA is stable in nonfixed surgical specimens. Laboratory Investigation 86: 202-211. (Pubitemid 43117599)
    • (2006) Laboratory Investigation , vol.86 , Issue.2 , pp. 202-211
    • Micke, P.1    Ohshima, M.2    Tahmasebpoor, S.3    Ren, Z.-P.4    Ostman, A.5    Ponten, F.6    Botling, J.7
  • 38
    • 1842474964 scopus 로고    scopus 로고
    • Evaluating RNA status for RT-PCR in extracts of postmortem human brain tissue
    • Miller, C. L. , S. Diglisic, F. Leister, M. Webster, and R. H. Yolken. 2004. Evaluating RNA status for RT-PCR in extracts of postmortem human brain tissue. Biotechniques 36: 628-633. (Pubitemid 38451647)
    • (2004) BioTechniques , vol.36 , Issue.4 , pp. 628-633
    • Miller, C.L.1    Diglisic, S.2    Leister, F.3    Webster, M.4    Yolken, R.H.5
  • 39
    • 77949523599 scopus 로고    scopus 로고
    • Seasonal differences of gene expression profiles in Song Sparrow (Melospiza melodia) hypothalamus in relation to territorialaggression
    • Mukai, M. , K. Replogle, J. Drnevich, G. Wang, D. Wacker, M. Band, D. F. Clayton, and J. C. Wingfield. 2009. Seasonal differences of gene expression profiles in Song Sparrow (Melospiza melodia) hypothalamus in relation to territorialaggression. PLoSone 4: e8182.
    • (2009) PLoSone , vol.4
    • Mukai, M.1    Replogle, K.2    Drnevich, J.3    Wang, G.4    Wacker, D.5    Band, M.6    Clayton, D.F.7    Wingfield, J.C.8
  • 41
    • 4444294198 scopus 로고    scopus 로고
    • RNA degradation in human breast tissue after surgical removal: A time-course study
    • DOI 10.1016/j.yexmp.2004.05.005, PII S0014480004000462
    • Ohashi, Y. , K. E. Creek, L. Pirisi, R. Kalus, and S. R. Young. 2004. RNA degradation in human breast tissue after surgical removal: a time-course study. Experimentaland Molecular Pathology 77: 98-103. (Pubitemid 39209291)
    • (2004) Experimental and Molecular Pathology , vol.77 , Issue.2 , pp. 98-103
    • Ohashi, Y.1    Creek, K.E.2    Pirisi, L.3    Kalus, R.4    Young, S.R.5
  • 48
    • 0003781343 scopus 로고    scopus 로고
    • SAS Institute version 5. 0. 1. 2. SAS Institute, Inc
    • SAS Institute. 2000. JMP statistical discovery software, version 5. 0. 1. 2. SAS Institute, Inc.
    • (2000) JMP Statistical Discovery Software
  • 49
    • 40249104719 scopus 로고    scopus 로고
    • Stability of RNA isolated from post-mortem tissues of Atlantic salmon (Salmo salar L.)
    • DOI 10.1007/s10695-007-9141-x
    • Cary, NC. Seear, P. , and G. Sweeney. 2008. Stability of RNA isolated from post-mortem tissues of Atlantic salmon (Salmo salar L. ). Fish Physiology and Biochemistry 34: 19-24. (Pubitemid 351330651)
    • (2008) Fish Physiology and Biochemistry , vol.34 , Issue.1 , pp. 19-24
    • Seear, P.J.1    Sweeney, G.E.2
  • 50
    • 1942455815 scopus 로고    scopus 로고
    • Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks
    • DOI 10.1038/nature02415
    • Shapiro, M. D. , M. E. Marks, C. L. Peichel, B. K. Blackman, K. S. Nereng, B. Jonsson, D. Schluter, and D. M. Kingsley. 2004. Genetic and developmental basis of evolutionary pelvic reduction in threespinesticklebacks. Nature 428: 717-723. (Pubitemid 38508276)
    • (2004) Nature , vol.428 , Issue.6984 , pp. 717-723
    • Shapiro, M.D.1    Marks, M.E.2    Peichel, C.L.3    Blackman, B.K.4    Nereng, K.S.5    Jonsson, B.6    Schluter, D.7    Kingsley, D.M.8
  • 53
    • 33745058943 scopus 로고    scopus 로고
    • Extraction of high-integrity RNA suitable for microarray gene expression analysis from long-term stored human thyroid tissues
    • DOI 10.1080/00313020600696272, PII R12308277717
    • Walter, M. A. , D. Seboek, P. Demougin, L. Bubendorf, M. Oberholzer, J. Muller-Brand, and B. Muller. 2006. Extraction of high-integrity RNA suitable for microarray gene expression analysis from long-term stored human thyroid tissues. Pathology 38: 249-253. (Pubitemid 43879722)
    • (2006) Pathology , vol.38 , Issue.3 , pp. 249-253
    • Walter, M.A.1    Seboek, D.2    Demougin, P.3    Bubendorf, L.4    Oberholzer, M.5    Muller-Brand, J.6    Muller, B.7
  • 54
    • 33748304389 scopus 로고    scopus 로고
    • Cervical tissue collection methods for RNA preservation: Comparison of snap-frozen, ethanol-fixed, and RNAlater-fixation
    • DOI 10.1097/01.pdm.0000213460.53021.cd, PII 0001960620060900000004
    • Wang, S. S. , M. E. Sherman, J. S. Rader, J. Carreon, M. Schiffman, and C. C. Baker. 2006. Cervical tissue collection methods for RNA preservation: comparison of snap-frozen, ethanol-fixed, and RNAlater-fixation. Diagnostic Molecular Pathology 15: 144-148. (Pubitemid 44325475)
    • (2006) Diagnostic Molecular Pathology , vol.15 , Issue.3 , pp. 144-148
    • Wang, S.S.1    Sherman, M.E.2    Rader, J.S.3    Carreon, J.4    Schiffman, M.5    Baker, C.C.6
  • 55
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Wang, Z. , M. Gerstein, and M. Snyder. 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics 10: 57-63.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 57
    • 77951917823 scopus 로고    scopus 로고
    • Nucleotide divergence vs. gene expression differentiation: Comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow
    • Wolf, J. B. W. , T. Bayer, B. Haubold, M. Schilhabel, P. Rosenstiel, and D. Tautz. 2010. Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology 19: 162-175.
    • (2010) Molecular Ecology , vol.19 , pp. 162-175
    • Wolf, J.B.W.1    Bayer, T.2    Haubold, B.3    Schilhabel, M.4    Rosenstiel, P.5    Tautz, D.6
  • 58
    • 0035217572 scopus 로고    scopus 로고
    • High stability of mRNAs postmortem and protocols for their assessment by RT-PCR
    • DOI 10.1016/S1385-299X(01)00119-2, PII S1385299X01001192
    • Yasojima, K. , E. G. McGeer, and P. L. McGeer. 2001. High stability of mRNAs postmortemand protocols for their assessment by RT-PCR. Brain Research Protocols 8: 212-218. (Pubitemid 33152947)
    • (2001) Brain Research Protocols , vol.8 , Issue.3 , pp. 212-218
    • Yasojima, K.1    McGeer, E.G.2    McGeer, P.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.