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Volumn 38, Issue 3, 2006, Pages 249-253

Extraction of high-integrity RNA suitable for microarray gene expression analysis from long-term stored human thyroid tissues

Author keywords

Fresh frozen tissue; Microarray; RNA extraction; RNA integrity number; Thyroid cancer

Indexed keywords

ALGORITHM; ARTICLE; CONTROLLED STUDY; FILTRATION; FOLLICULAR CARCINOMA; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENOME; GOITER; HUMAN; HUMAN TISSUE; PAPILLARY CARCINOMA; PRECIPITATION; RNA ANALYSIS; RNA EXTRACTION; THYROID GLAND;

EID: 33745058943     PISSN: 00313025     EISSN: 14653931     Source Type: Journal    
DOI: 10.1080/00313020600696272     Document Type: Article
Times cited : (9)

References (29)
  • 1
    • 8444252965 scopus 로고    scopus 로고
    • Genomic and proteomic technologies for individualisation and improvement of cancer treatment
    • Wulfkuhle J, Espina V, Liotta L, Petricoin E. Genomic and proteomic technologies for individualisation and improvement of cancer treatment. Eur J Cancer 2004; 40: 2623-32.
    • (2004) Eur J Cancer , vol.40 , pp. 2623-2632
    • Wulfkuhle, J.1    Espina, V.2    Liotta, L.3    Petricoin, E.4
  • 2
    • 15344349131 scopus 로고    scopus 로고
    • Microarray-based gene expression profiling of hematologic malignancies: Basic concepts and clinical applications
    • Margalit O, Somech R, Amariglio N, Rechavi G. Microarray-based gene expression profiling of hematologic malignancies: basic concepts and clinical applications. Blood Rev 2005; 19: 223-34.
    • (2005) Blood Rev , vol.19 , pp. 223-234
    • Margalit, O.1    Somech, R.2    Amariglio, N.3    Rechavi, G.4
  • 3
    • 0034016185 scopus 로고    scopus 로고
    • Genome changes and gene expression in human solid tumors
    • Gray JW, Collins C. Genome changes and gene expression in human solid tumors. Carcinogenesis 2000; 21: 443-52.
    • (2000) Carcinogenesis , vol.21 , pp. 443-452
    • Gray, J.W.1    Collins, C.2
  • 4
    • 0034330239 scopus 로고    scopus 로고
    • Long-term outcome of patients with differentiated thyroid carcinoma: Effect of therapy
    • Mazzaferri EL. Long-term outcome of patients with differentiated thyroid carcinoma: effect of therapy. Endocr Pract 2000; 6: 469-76.
    • (2000) Endocr Pract , vol.6 , pp. 469-476
    • Mazzaferri, E.L.1
  • 5
    • 0035108505 scopus 로고    scopus 로고
    • Preservation of RNA for functional genomic studies: A multidisciplinary tumor bank protocol
    • Florell SR, Coffin CM, Holden JA, et al. Preservation of RNA for functional genomic studies: a multidisciplinary tumor bank protocol. Mod Pathol 2001; 14: 116-28.
    • (2001) Mod Pathol , vol.14 , pp. 116-128
    • Florell, S.R.1    Coffin, C.M.2    Holden, J.A.3
  • 6
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 1987; 162: 156-9.
    • (1987) Anal Biochem , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 7
    • 0033959464 scopus 로고    scopus 로고
    • Comparison of six nucleic acid extraction methods for detection of viral DNA or RNA sequences in four different non-serum specimen types
    • Kok T, Wati S, Bayly B, Devonshire-Gill D, Higgins G. Comparison of six nucleic acid extraction methods for detection of viral DNA or RNA sequences in four different non-serum specimen types. J Clin Virol 2000; 16: 59-63.
    • (2000) J Clin Virol , vol.16 , pp. 59-63
    • Kok, T.1    Wati, S.2    Bayly, B.3    Devonshire-Gill, D.4    Higgins, G.5
  • 8
    • 28644452204 scopus 로고    scopus 로고
    • Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces
    • Imbeaud S, Graudens E, Boulanger V, et al. Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces. Nucleic Acids Res 2005; 33: e56.
    • (2005) Nucleic Acids Res , vol.33
    • Imbeaud, S.1    Graudens, E.2    Boulanger, V.3
  • 9
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • Bustin SA. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol 2002; 29: 23-39.
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 10
    • 0033986177 scopus 로고    scopus 로고
    • A microfluidic system for high-speed reproducible DNA sizing and quantitation
    • Mueller O, Hahnenberger K, Dittmann M, et al. A microfluidic system for high-speed reproducible DNA sizing and quantitation. Electrophoresis 2000; 21: 128-34.
    • (2000) Electrophoresis , vol.21 , pp. 128-134
    • Mueller, O.1    Hahnenberger, K.2    Dittmann, M.3
  • 11
    • 0035931072 scopus 로고    scopus 로고
    • A compendium of gene expression in normal human tissues
    • Hsiao LL, Dangond F, Yoshida T, et al. A compendium of gene expression in normal human tissues. Physiol Genomics 2001; 7: 97-104.
    • (2001) Physiol Genomics , vol.7 , pp. 97-104
    • Hsiao, L.L.1    Dangond, F.2    Yoshida, T.3
  • 12
    • 0034011233 scopus 로고    scopus 로고
    • Processing renal biopsies for diagnostic mRNA quantification: Improvement of RNA extraction and storage conditions
    • Eikmans M, Baelde HJ, De Heer E, Bruijn JA. Processing renal biopsies for diagnostic mRNA quantification: improvement of RNA extraction and storage conditions. J Am Soc Nephrol 2000; 11: 868-73.
    • (2000) J Am Soc Nephrol , vol.11 , pp. 868-873
    • Eikmans, M.1    Baelde, H.J.2    De Heer, E.3    Bruijn, J.A.4
  • 13
    • 0033060887 scopus 로고    scopus 로고
    • Preservation of pathological tissue specimens by freeze-drying for immunohistochemical staining and various molecular biological analyses
    • Matsuo S, Sugiyama T, Okuyama T, et al. Preservation of pathological tissue specimens by freeze-drying for immunohistochemical staining and various molecular biological analyses. Pathol Int 1999; 49: 383-90.
    • (1999) Pathol Int , vol.49 , pp. 383-390
    • Matsuo, S.1    Sugiyama, T.2    Okuyama, T.3
  • 14
    • 0028701565 scopus 로고
    • Effect of formalin fixation and long-term storage on the detectability of bovine viral-diarrhoea-virus (BVDV) RNA in archival brain tissue using polymerase chain reaction
    • Gruber AD, Moennig V, Hewicker-Trautwein M, Trautwein G. Effect of formalin fixation and long-term storage on the detectability of bovine viral-diarrhoea-virus (BVDV) RNA in archival brain tissue using polymerase chain reaction. Zentralbl Veterinarmed B 1994; 41: 654-61.
    • (1994) Zentralbl Veterinarmed B , vol.41 , pp. 654-661
    • Gruber, A.D.1    Moennig, V.2    Hewicker-Trautwein, M.3    Trautwein, G.4
  • 15
    • 0037683333 scopus 로고    scopus 로고
    • Extraction of RNA from dried blood on filter papers after long-term storage
    • Karlsson H, Guthenberg C, von Dobeln U, Kristenssson K. Extraction of RNA from dried blood on filter papers after long-term storage. Clin Chem 2003; 49: 979-81.
    • (2003) Clin Chem , vol.49 , pp. 979-981
    • Karlsson, H.1    Guthenberg, C.2    Von Dobeln, U.3    Kristenssson, K.4
  • 16
    • 0036833462 scopus 로고    scopus 로고
    • Analysis of the molecular quality of human tissues: An experience from the Cooperative Human Tissue Network
    • Jewell SD, Srinivasan M, McCart LM, et al. Analysis of the molecular quality of human tissues: an experience from the Cooperative Human Tissue Network. Am J Clin Pathol 2002; 118: 733-41.
    • (2002) Am J Clin Pathol , vol.118 , pp. 733-741
    • Jewell, S.D.1    Srinivasan, M.2    McCart, L.M.3
  • 17
    • 0036244746 scopus 로고    scopus 로고
    • A research-based tumor tissue bank of gynecologic oncology: Characteristics of nucleic acids extracted from normal and tumor tissues from different sites
    • Chu TY, Hwang KS, Yu MH, Lee HS, Lai HC, Liu JY. A research-based tumor tissue bank of gynecologic oncology: characteristics of nucleic acids extracted from normal and tumor tissues from different sites. Int J Gynecol Cancer 2002; 12: 171-6.
    • (2002) Int J Gynecol Cancer , vol.12 , pp. 171-176
    • Chu, T.Y.1    Hwang, K.S.2    Yu, M.H.3    Lee, H.S.4    Lai, H.C.5    Liu, J.Y.6
  • 18
    • 33644648932 scopus 로고    scopus 로고
    • Extraction of RNA from archival tissues and measurement of thrombospondin-1 mRNA in normal, dysplastic, and malignant oral tissues
    • Macluskey M, Baillie R, Morrow H, Schor SL, Schor AM. Extraction of RNA from archival tissues and measurement of thrombospondin-1 mRNA in normal, dysplastic, and malignant oral tissues. Br J Oral Maxillofac Surg 2006; 44: 116-23.
    • (2006) Br J Oral Maxillofac Surg , vol.44 , pp. 116-123
    • Macluskey, M.1    Baillie, R.2    Morrow, H.3    Schor, S.L.4    Schor, A.M.5
  • 19
    • 0036978852 scopus 로고    scopus 로고
    • Optimization of RNA isolation from human ocular tissues and analysis of prostanoid receptor mRNA expression using RT-PCR
    • Kyveris A, Maruscak E, Senchyna M. Optimization of RNA isolation from human ocular tissues and analysis of prostanoid receptor mRNA expression using RT-PCR. Mol Vis 2002; 8: 51-8.
    • (2002) Mol Vis , vol.8 , pp. 51-58
    • Kyveris, A.1    Maruscak, E.2    Senchyna, M.3
  • 20
    • 3242892834 scopus 로고    scopus 로고
    • An optimised protocol for the extraction of non-viral mRNA from human plasma frozen for three years
    • Wong SC, Lo ES, Cheung MT. An optimised protocol for the extraction of non-viral mRNA from human plasma frozen for three years. J Clin Pathol 2004; 57: 766-8.
    • (2004) J Clin Pathol , vol.57 , pp. 766-768
    • Wong, S.C.1    Lo, E.S.2    Cheung, M.T.3
  • 21
    • 0034079993 scopus 로고    scopus 로고
    • Biological stability of RNA isolated from RNAlater-treated brain tumor and neuroblastoma xenografts
    • Grotzer MA, Patti R, Geoerger B, Eggert A, Chou TT, Phillips PC. Biological stability of RNA isolated from RNAlater-treated brain tumor and neuroblastoma xenografts. Med Pediatr Oncol 2000; 34: 438-42.
    • (2000) Med Pediatr Oncol , vol.34 , pp. 438-442
    • Grotzer, M.A.1    Patti, R.2    Geoerger, B.3    Eggert, A.4    Chou, T.T.5    Phillips, P.C.6
  • 22
    • 0142106515 scopus 로고    scopus 로고
    • A tissue fixative that protects macromolecules (DNA, RNA, and protein) and histomorphology in clinical samples
    • Vincek V, Nassiri M, Nadji M, Morales AR. A tissue fixative that protects macromolecules (DNA, RNA, and protein) and histomorphology in clinical samples. Lab Invest 2003; 83: 1427-35.
    • (2003) Lab Invest , vol.83 , pp. 1427-1435
    • Vincek, V.1    Nassiri, M.2    Nadji, M.3    Morales, A.R.4
  • 24
    • 0003173090 scopus 로고
    • Mechanics of freezing in living cells and tissues
    • Meryman HT. Mechanics of freezing in living cells and tissues. Science 1956; 124: 515-21.
    • (1956) Science , vol.124 , pp. 515-521
    • Meryman, H.T.1
  • 25
    • 0015792601 scopus 로고
    • Survival of certain microorganisms subjected to rapid and very rapid freezing on membrane filters
    • Albrecht RM, Orndorff GR, MacKenzie AP. Survival of certain microorganisms subjected to rapid and very rapid freezing on membrane filters. Cryobiology 1973; 10: 233-9.
    • (1973) Cryobiology , vol.10 , pp. 233-239
    • Albrecht, R.M.1    Orndorff, G.R.2    MacKenzie, A.P.3
  • 26
    • 0035024276 scopus 로고    scopus 로고
    • Prognostic and predictive factors in breast cancer
    • Bundred NJ. Prognostic and predictive factors in breast cancer. Cancer Treat Rev 2001; 27: 137-42.
    • (2001) Cancer Treat Rev , vol.27 , pp. 137-142
    • Bundred, N.J.1
  • 27
    • 0036384579 scopus 로고    scopus 로고
    • Prognostic factors in non-small cell lung cancer: A decade of progress
    • Brundage MD, Davies D, Mackillop WJ. Prognostic factors in non-small cell lung cancer: a decade of progress. Chest 2002; 122: 1037-57.
    • (2002) Chest , vol.122 , pp. 1037-1057
    • Brundage, M.D.1    Davies, D.2    Mackillop, W.J.3
  • 29
    • 4944255649 scopus 로고    scopus 로고
    • Prognostic factors in differentiated thyroid carcinomas and their implications for current staging classifications
    • Jukkola A, Bloigu R, Ebeling T, Salmela P, Blanco G. Prognostic factors in differentiated thyroid carcinomas and their implications for current staging classifications. Endocr Relat Cancer 2004; 11: 571-9.
    • (2004) Endocr Relat Cancer , vol.11 , pp. 571-579
    • Jukkola, A.1    Bloigu, R.2    Ebeling, T.3    Salmela, P.4    Blanco, G.5


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