-
1
-
-
0015859467
-
Principles that govern the folding of protein chains
-
4124164 10.1126/science.181.4096.223 1:CAS:528:DyaE3sXkvVygtbc%3D
-
CB Anfinsen 1973 Principles that govern the folding of protein chains Science 181 223 230 4124164 10.1126/science.181.4096.223 1:CAS:528: DyaE3sXkvVygtbc%3D
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
2
-
-
84962433748
-
Helix formation in α,γ- and β,γ-hybrid peptides: Theoretical insights into mimicry of α- and β-peptides
-
DOI 10.1021/jo052340e
-
C Baldauf R Günther H-J Hofmann 2006 Helix formation in α, γ- and β, γ-hybrid peptides: theoretical insights into mimicry of α- and β-peptides J Org Chem 71 1200 1208 16438538 10.1021/jo052340e 1:CAS:528:DC%2BD28XitVyqsQ%3D%3D (Pubitemid 43209268)
-
(2006)
Journal of Organic Chemistry
, vol.71
, Issue.3
, pp. 1200-1208
-
-
Baldauf, C.1
Gunther, R.2
Hofmann, H.-J.3
-
3
-
-
0000422801
-
Stereochemistry of peptides and polypeptides containing omega amino acids
-
A Banerjee P Balaram 1997 Stereochemistry of peptides and polypeptides containing omega amino acids Curr Sci India 73 1067 1077 1:CAS:528: DyaK1cXnsFSksA%3D%3D (Pubitemid 127704804)
-
(1997)
Current Science
, vol.73
, Issue.12
, pp. 1067-1077
-
-
Banerjee, A.1
Balaram, P.2
-
4
-
-
0035965730
-
Programmed self-sorting of coiled coils with leucine and hexafluoroleucine cores [10]
-
DOI 10.1021/ja016767o
-
B Bilgicer X Xing K Kumar 2001 Programmed self-sorting of coiled coils with leucine and hexafluoroleucine cores J Am Chem Soc 123 11815 11816 11716746 10.1021/ja016767o 1:CAS:528:DC%2BD3MXnvFyrurk%3D (Pubitemid 33121809)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.47
, pp. 11815-11816
-
-
Bilgicer, B.1
Xing, X.2
Kumar, K.3
-
5
-
-
0037010015
-
Long-range interactions stabilize the fold of a non-natural oligomer
-
12296699 10.1021/ja020728a 1:CAS:528:DC%2BD38XmslGnsbc%3D
-
RP Cheng WF DeGrado 2002 Long-range interactions stabilize the fold of a non-natural oligomer J Am Chem Soc 124 11564 11565 12296699 10.1021/ja020728a 1:CAS:528:DC%2BD38XmslGnsbc%3D
-
(2002)
J Am Chem Soc
, vol.124
, pp. 11564-11565
-
-
Cheng, R.P.1
Degrado, W.F.2
-
6
-
-
33846947579
-
High-resolution structure of a β-peptide bundle
-
17283998 10.1021/ja068678n 1:CAS:528:DC%2BD2sXns1Ohsw%3D%3D
-
DS Daniels EJ Petersson JX Qiu A Schepartz 2007 High-resolution structure of a β-peptide bundle J Am Chem Soc 129 1532 1533 17283998 10.1021/ja068678n 1:CAS:528:DC%2BD2sXns1Ohsw%3D%3D
-
(2007)
J Am Chem Soc
, vol.129
, pp. 1532-1533
-
-
Daniels, D.S.1
Petersson, E.J.2
Qiu, J.X.3
Schepartz, A.4
-
7
-
-
33846823909
-
Particle mesh Ewald: An N.log(N) method for Ewald sums in large systems
-
10.1063/1.464397 1:CAS:528:DyaK3sXks1Ohsr0%3D
-
T Darden D York L Pedersen 1993 Particle mesh Ewald: an N.log(N) method for Ewald sums in large systems J Chem Phys 98 10089 10092 10.1063/1.464397 1:CAS:528:DyaK3sXks1Ohsr0%3D
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
8
-
-
0344687314
-
Side-chain contributions to membrane protein structure and stability
-
DOI 10.1016/j.jmb.2003.10.041
-
S Faham D Yang E Bare S Yohannan JP Whitelegge JU Bowie 2004 Side-chain contributions to membrane protein structure and stability J Mol Biol 335 297 305 14659758 10.1016/j.jmb.2003.10.041 1:CAS:528:DC%2BD3sXpsVSgu7c%3D (Pubitemid 37494980)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.1
, pp. 297-305
-
-
Faham, S.1
Yang, D.2
Bare, E.3
Yohannan, S.4
Whitelegge, J.P.5
Bowie, J.U.6
-
9
-
-
0025232814
-
Solid phase peptide synthesis utilizing 9-fluorenylmethoxycarbonyl amino acids
-
GB Fields RL Noble 1990 Solid phase peptide synthesis utilizing 9-fluorenylmethoxycarbonyl amino acids Int J Pept Protein Res 35 161 214 2191922 10.1111/j.1399-3011.1990.tb00939.x 1:CAS:528:DyaK3cXksVWhsbg%3D (Pubitemid 20126875)
-
(1990)
International Journal of Peptide and Protein Research
, vol.35
, Issue.3
, pp. 161-214
-
-
Fields, G.B.1
Noble, R.L.2
-
10
-
-
0542421525
-
Foldamers: A Manifesto
-
SH Gellman 1998 Foldamers: a manifesto Acc Chem Res 31 173 180 10.1021/ar960298r 1:CAS:528:DyaK1cXhvF2qtr0%3D (Pubitemid 128474551)
-
(1998)
Accounts of Chemical Research
, vol.31
, Issue.4
, pp. 173-180
-
-
Gellman, S.H.1
-
11
-
-
77953314514
-
Helix formation in preorganized β/γ-peptide foldamers: Hydrogen-bond analogy to the α-helix without α-amino acid residues
-
20491510 10.1021/ja103233a 1:CAS:528:DC%2BC3cXmtlCrsLc%3D
-
L Guo AM Almeida W Zhang AG Reidenbach SH Choi IA Guzei SH Gellman 2010 Helix formation in preorganized β/γ-peptide foldamers: hydrogen-bond analogy to the α-helix without α-amino acid residues J Am Chem Soc 132 7868 7869 20491510 10.1021/ja103233a 1:CAS:528:DC%2BC3cXmtlCrsLc%3D
-
(2010)
J Am Chem Soc
, vol.132
, pp. 7868-7869
-
-
Guo, L.1
Almeida, A.M.2
Zhang, W.3
Reidenbach, A.G.4
Choi, S.H.5
Guzei, I.A.6
Gellman, S.H.7
-
12
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
8248779 10.1126/science.8248779 1:CAS:528:DyaK2cXpvFOitQ%3D%3D
-
PB Harbury T Zhang PS Kim T Alber 1993 A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants Science 262 1401 1407 8248779 10.1126/science.8248779 1:CAS:528:DyaK2cXpvFOitQ%3D%3D
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
13
-
-
36849057990
-
-
Wiley-VCH Weinheim 10.1002/9783527611478
-
Hecht S, Huc I (2007) Foldamers. Wiley-VCH, Weinheim
-
(2007)
Foldamers
-
-
Hecht, S.1
Huc, I.2
-
14
-
-
0000388705
-
LINCS: A Linear Constraint Solver for molecular simulations
-
B Hess H Bekker HJC Berendsen JGEM Fraaije 1997 LINCS: a linear constraint solver for molecular simulations J Comput Chem 18 1463 1472 10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H 1:CAS:528:DyaK2sXlvV2nu7g%3D (Pubitemid 127637344)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.12
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
15
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
10.1021/ct700301q 1:CAS:528:DC%2BD1cXhsVSqurc%3D
-
B Hess C Kutzner D van der Spoel E Lindahl 2008 GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation J Chem Theory Comput 4 435 447 10.1021/ct700301q 1:CAS:528:DC%2BD1cXhsVSqurc%3D
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
17
-
-
0001538909
-
Canonical dynamics: Equilibrium phase-space distributions
-
9895674 10.1103/PhysRevA.31.1695
-
WG Hoover 1985 Canonical dynamics: equilibrium phase-space distributions Phys Rev A 31 1695 1697 9895674 10.1103/PhysRevA.31.1695
-
(1985)
Phys Rev A
, vol.31
, pp. 1695-1697
-
-
Hoover, W.G.1
-
20
-
-
0030833324
-
ω-Amino acids in peptide design. Crystal structures and solution conformations of peptide helices containing a β-Alanyl-γ-Aminobutyryl segment
-
DOI 10.1021/ja970566w
-
IL Karle A Pramanik A Banerjee S Bhattacharjya P Balaram 1997 ω-Amino acids in peptide design. Crystal structures and solution conformations of peptide helices containing a b-alanyl-g-aminobutyryl segment J Am Chem Soc 119 9087 9095 10.1021/ja970566w 1:CAS:528:DyaK2sXmtVektbY%3D (Pubitemid 27440483)
-
(1997)
Journal of the American Chemical Society
, vol.119
, Issue.39
, pp. 9087-9095
-
-
Karle, I.L.1
Pramanik, A.2
Banerjee, A.3
Bhattacharjya, S.4
Balaram, P.5
-
21
-
-
2142742534
-
Designing polymers that mimic biomolecules
-
DOI 10.1016/S0959-440X(99)80075-X
-
K Kirshenbaum RN Zuckermann KA Dill 1999 Designing polymers that mimic biomolecules Curr Opin Struct Biol 9 530 535 10449369 10.1016/S0959-440X(99) 80075-X 1:CAS:528:DyaK1MXlt1Cgtrc%3D (Pubitemid 29377899)
-
(1999)
Current Opinion in Structural Biology
, vol.9
, Issue.4
, pp. 530-535
-
-
Kirshenbaum, K.1
Zuckermann, R.N.2
Dill, K.A.3
-
22
-
-
0036707991
-
Modern analytical ultracentrifugation in protein science: A tutorial review
-
DOI 10.1110/ps.0207702
-
J Lebowitz MS Lewis P Schuck 2002 Modern analytical ultracentrifugation in protein science: a tutorial review Protein Sci 11 2067 2079 12192063 10.1110/ps.0207702 1:CAS:528:DC%2BD38XmslCjurg%3D (Pubitemid 34919611)
-
(2002)
Protein Science
, vol.11
, Issue.9
, pp. 2067-2079
-
-
Lebowitz, J.1
Lewis, M.S.2
Schuck, P.3
-
23
-
-
17444424974
-
The structure of α-helical coiled coils
-
DOI 10.1016/S0065-3233(05)70003-6, Fibrous Proteins Coiled-Coils, Collagen and Elastomers
-
AN Lupas M Gruber 2005 The structure of α-helical coiled coils Adv Protein Chem 70 37 38 15837513 10.1016/S0065-3233(05)70003-6 1:CAS:528:DC%2BD28Xot1Gkuro%3D (Pubitemid 40544780)
-
(2005)
Advances in Protein Chemistry
, vol.70
, pp. 37-78
-
-
Lupas, A.N.1
Gruber, M.2
-
24
-
-
84943502952
-
A molecular dynamics method for simulations in the canonical ensemble
-
10.1080/00268978400101201
-
S Nosé 1984 A molecular dynamics method for simulations in the canonical ensemble Mol phys 52 255 268 10.1080/00268978400101201
-
(1984)
Mol Phys
, vol.52
, pp. 255-268
-
-
Nosé, S.1
-
25
-
-
84926811618
-
Constant pressure molecular dynamics for molecular systems
-
10.1080/00268978300102851
-
S Nosé ML Klein 1983 Constant pressure molecular dynamics for molecular systems Mol phys 50 1055 1076 10.1080/00268978300102851
-
(1983)
Mol Phys
, vol.50
, pp. 1055-1076
-
-
Nosé, S.1
Klein, M.L.2
-
26
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
-
15264259 10.1002/jcc.20090 1:CAS:528:DC%2BD2cXmvVOhtr4%3D
-
C Oostenbrink A Villa AE Mark WF Van Gunsteren 2004 A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6 J Comput Chem 25 1656 1676 15264259 10.1002/jcc.20090 1:CAS:528:DC%2BD2cXmvVOhtr4%3D
-
(2004)
J Comput Chem
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
27
-
-
0024534241
-
Evidence that the leucine zipper is a coiled coil
-
EK O'Shea R Rutkowski PS Kim 1989 Evidence that the leucine zipper is a coiled coil Science 243 538 542 2911757 10.1126/science.2911757 (Pubitemid 19048755)
-
(1989)
Science
, vol.243
, Issue.4890
, pp. 538-542
-
-
O'Shea, E.K.1
Rutkowski, R.2
Kim, P.S.3
-
28
-
-
0024384644
-
Preferential heterodimer formation by isolated leucine zippers from Fos and Jun
-
EK O'Shea R Rutkowski WF Stafford PS Kim 1989 Preferential heterodimer formation by isolated leucine zippers from fos and jun Science 245 646 648 2503872 10.1126/science.2503872 (Pubitemid 19213343)
-
(1989)
Science
, vol.245
, Issue.4918
, pp. 646-648
-
-
O'Shea, E.K.1
Rutkowski, R.2
Stafford III, W.F.3
Kim, P.S.4
-
29
-
-
0019707626
-
Polymorphic transitions in single crystals: A new molecular dynamics method
-
DOI 10.1063/1.328693
-
M Parrinello A Rahman 1981 Polymorphic transitions in single crystals: a new molecular dynamics method J Appl Phys 52 7182 7190 10.1063/1.328693 1:CAS:528:DyaL38XislSnuw%3D%3D (Pubitemid 12456820)
-
(1981)
Journal of Applied Physics
, vol.52
, Issue.12
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
-
30
-
-
77956258524
-
Structural consequences of β-amino acid preorganization in a self-assembling α/β-peptide: Fundamental studies of foldameric helix bundles
-
20718422 10.1021/ja103543s 1:CAS:528:DC%2BC3cXhtVCnsLjK
-
JL Price WS Horne SH Gellman 2010 Structural consequences of β-amino acid preorganization in a self-assembling α/β-peptide: fundamental studies of foldameric helix bundles J Am Chem Soc 132 12378 12387 20718422 10.1021/ja103543s 1:CAS:528:DC%2BC3cXhtVCnsLjK
-
(2010)
J Am Chem Soc
, vol.132
, pp. 12378-12387
-
-
Price, J.L.1
Horne, W.S.2
Gellman, S.H.3
-
31
-
-
33748358358
-
Toward β-amino acid proteins: A cooperatively folded β-peptide quaternary structure
-
DOI 10.1021/ja063164+
-
JX Qiu EJ Petersson EE Matthews A Schepartz 2006 Toward β-amino acid proteins: a cooperatively folded b-peptide quaternary structure J Am Chem Soc 128 11338 11339 16939241 10.1021/ja063164+ 1:CAS:528:DC%2BD28XnvFOqsrY%3D (Pubitemid 44338812)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.35
, pp. 11338-11339
-
-
Qiu, J.X.1
Petersson, E.J.2
Matthews, E.E.3
Schepartz, A.4
-
32
-
-
79952400618
-
A helix-forming αβγ-chimeric peptide with catalytic activity: A hybrid peptide ligase
-
10.1039/c0cc03760e
-
R Rezaei Araghi B Koksch 2011 A helix-forming αβγ- chimeric peptide with catalytic activity: a hybrid peptide ligase Chem Commun 47 3544 3546 10.1039/c0cc03760e
-
(2011)
Chem Commun
, vol.47
, pp. 3544-3546
-
-
Rezaei Araghi, R.1
Koksch, B.2
-
33
-
-
76649110576
-
A β/γ motif to mimic α-helical turns in proteins
-
20039254 10.1002/cbic.200900700 1:CAS:528:DC%2BC3cXhvFGhu7Y%3D
-
R Rezaei Araghi C Jäckel H Cölfen M Salwiczek A Völkel SC Wagner S Wieczorek C Baldauf B Koksch 2010 A β/γ motif to mimic α-helical turns in proteins ChemBioChem 11 335 339 20039254 10.1002/cbic.200900700 1:CAS:528:DC%2BC3cXhvFGhu7Y%3D
-
(2010)
ChemBioChem
, vol.11
, pp. 335-339
-
-
Rezaei Araghi, R.1
Jäckel, C.2
Cölfen, H.3
Salwiczek, M.4
Völkel, A.5
Wagner, S.C.6
Wieczorek, S.7
Baldauf, C.8
Koksch, B.9
-
34
-
-
77951146397
-
Self-assembly of coiled coils in synthetic biology: Inspiration and progress
-
10.1002/anie.200904943 1:CAS:528:DC%2BC3cXkslSjsLY%3D
-
H Robson Marsden A Kros 2010 Self-assembly of coiled coils in synthetic biology: inspiration and progress Angew Chem Int Ed 49 2988 3005 10.1002/anie.200904943 1:CAS:528:DC%2BC3cXkslSjsLY%3D
-
(2010)
Angew Chem Int Ed
, vol.49
, pp. 2988-3005
-
-
Robson Marsden, H.1
Kros, A.2
-
35
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
-
P Schuck 2000 Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling Biophys J 78 1606 1619 10692345 10.1016/S0006-3495(00)76713-0 1:CAS:528: DC%2BD3cXhsF2jtbg%3D (Pubitemid 30141584)
-
(2000)
Biophysical Journal
, vol.78
, Issue.3
, pp. 1606-1619
-
-
Schuck, P.1
-
36
-
-
9444226868
-
The world of β- And γ-peptides comprised of homologated proteinogenic amino acids and other components
-
17191902 10.1002/cbdv.200490087 1:CAS:528:DC%2BD2cXnslCktb0%3D
-
D Seebach AK Beck DJ Bierbaum 2004 The world of β- and γ-peptides comprised of homologated proteinogenic amino acids and other components Chem Biodivers 1 1111 1239 17191902 10.1002/cbdv.200490087 1:CAS:528:DC%2BD2cXnslCktb0%3D
-
(2004)
Chem Biodivers
, vol.1
, pp. 1111-1239
-
-
Seebach, D.1
Beck, A.K.2
Bierbaum, D.J.3
-
37
-
-
34247144592
-
Hybrid peptide design. Hydrogen bonded conformations in peptides containing the stereochemically constrained γ-amino acid residue, gabapentin
-
DOI 10.1021/ja068910p
-
PG Vasudev K Ananda S Chatterjee S Aravinda N Shamala P Balaram 2007 Hybrid Peptide Design. Hydrogen bonded conformations in peptides containing the stereochemically constrained β-amino acid residue, gabapentin J Am Chem Soc 129 4039 4048 17348653 10.1021/ja068910p 1:CAS:528:DC%2BD2sXis1agur8%3D (Pubitemid 46595524)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.13
, pp. 4039-4048
-
-
Vasudev, P.G.1
Ananda, K.2
Chatterjee, S.3
Aravinda, S.4
Shamala, N.5
Balaram, P.6
-
38
-
-
17444433002
-
The design of coiled-coil structures and assemblies
-
DOI 10.1016/S0065-3233(05)70004-8, Fibrous Proteins Coiled-Coils, Collagen and Elastomers
-
DN Woolfson 2005 The design of coiled-coil structures and assemblies Adv Protein Chem 70 79 112 15837514 10.1016/S0065-3233(05)70004-8 1:CAS:528:DC%2BD28Xot1Gkurg%3D (Pubitemid 40544781)
-
(2005)
Advances in Protein Chemistry
, vol.70
, pp. 79-112
-
-
Woolfson, D.N.1
-
39
-
-
22244443840
-
Structure-based engineering of internal cavities in coiled-coil peptides
-
DOI 10.1021/bi050742a
-
MK Yadav JE Redman LJ Leman JM Alvarez-Gutiérrez Y Zhang CD Stout MR Ghadiri 2005 Structure-based engineering of internal cavities in coiled-coil peptides Biochemistry 44 9723 9732 16008357 10.1021/bi050742a 1:CAS:528:DC%2BD2MXltlyrtrw%3D (Pubitemid 40994366)
-
(2005)
Biochemistry
, vol.44
, Issue.28
, pp. 9723-9732
-
-
Yadav, M.K.1
Redman, J.E.2
Leman, L.J.3
Alvarez-Gutierrez, J.M.4
Zhang, Y.5
Stout, C.D.6
Ghadiri, M.R.7
-
40
-
-
30744448188
-
Selective protein-protein interactions driven by a phenylalanine interface
-
DOI 10.1021/ja055494k
-
NC Yoder K Kumar 2006 Selective protein-protein interactions driven by a phenylalanine interface J Am Chem Soc 128 188 191 16390146 10.1021/ja055494k 1:CAS:528:DC%2BD2MXhtlShtLfE (Pubitemid 43100870)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.1
, pp. 188-191
-
-
Yoder, N.C.1
Kumar, K.2
-
41
-
-
68849086734
-
Experimental and computational evaluation of forces directing the association of transmembrane helices
-
19722646 10.1021/ja904625b 1:CAS:528:DC%2BD1MXovFais7g%3D
-
Y Zhang DW Kulp JD Lear WF DeGrado 2009 Experimental and computational evaluation of forces directing the association of transmembrane helices J Am Chem Soc 131 11341 11343 19722646 10.1021/ja904625b 1:CAS:528: DC%2BD1MXovFais7g%3D
-
(2009)
J Am Chem Soc
, vol.131
, pp. 11341-11343
-
-
Zhang, Y.1
Kulp, D.W.2
Lear, J.D.3
Degrado, W.F.4
|