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Volumn 487, Issue 1, 2011, Pages 52-61

The polypyrimidine/polypurine motif in the mouse mu opioid receptor gene promoter is a supercoiling-regulatory element

Author keywords

Gene expression; Homologous PPy u motifs; Mu opioid receptor; Supercoiling regulatory element; Topoisomerase

Indexed keywords

DNA TOPOISOMERASE; DNA TOPOISOMERASE INHIBITOR; MU OPIATE RECEPTOR; NUCLEASE S1; PURINE; PYRIMIDINE;

EID: 80052320055     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2011.07.026     Document Type: Article
Times cited : (3)

References (39)
  • 1
    • 4944266359 scopus 로고    scopus 로고
    • Position- and orientation-specific enhancement of topoisomerase I cleavage complexes by triplex DNA structures
    • Antony S., Arimondo P.B., Sun J., Pommier Y. Position- and orientation-specific enhancement of topoisomerase I cleavage complexes by triplex DNA structures. Nucleic Acids Res. 2004, 32:5163-5173.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5163-5173
    • Antony, S.1    Arimondo, P.B.2    Sun, J.3    Pommier, Y.4
  • 2
    • 8444231721 scopus 로고    scopus 로고
    • Non-B DNA conformations, genomic rearrangements, and human disease
    • Bacolla A., Wells R.D. Non-B DNA conformations, genomic rearrangements, and human disease. J. Biol. Chem. 2004, 279:47411-47414.
    • (2004) J. Biol. Chem. , vol.279 , pp. 47411-47414
    • Bacolla, A.1    Wells, R.D.2
  • 3
    • 33646902184 scopus 로고    scopus 로고
    • *homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region
    • *homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region. Nucleic Acids Res. 2006, 34:2663-2675.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 2663-2675
    • Bacolla, A.1
  • 4
    • 0028931130 scopus 로고
    • An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes
    • Behe M.J. An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes. Nucleic Acids Res. 1995, 23:689-695.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 689-695
    • Behe, M.J.1
  • 5
    • 0028859503 scopus 로고
    • Induction of double-strand breaks by S1 nuclease, mung bean nuclease and nuclease P1 in DNA containing abasic sites and nicks
    • Chaudhry M.A., Weinfeld M. Induction of double-strand breaks by S1 nuclease, mung bean nuclease and nuclease P1 in DNA containing abasic sites and nicks. Nucleic Acids Res. 1995, 23:3805-3809.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3805-3809
    • Chaudhry, M.A.1    Weinfeld, M.2
  • 6
    • 0033035246 scopus 로고    scopus 로고
    • Expression of mu-, kappa-, and delta-opioid receptors in P10 mouse embryonal carcinoma cells
    • Chen H.C., Wei L.N., Loh H.H. Expression of mu-, kappa-, and delta-opioid receptors in P10 mouse embryonal carcinoma cells. Neuroscience 1999, 92:1143-1155.
    • (1999) Neuroscience , vol.92 , pp. 1143-1155
    • Chen, H.C.1    Wei, L.N.2    Loh, H.H.3
  • 7
    • 78649810417 scopus 로고    scopus 로고
    • Differential gene expression activity among species-specific polypyrimidine/polypurine motifs in mu opioid receptor gene promoters
    • Choe C.Y., Dong J., Law P.Y., Loh H.H. Differential gene expression activity among species-specific polypyrimidine/polypurine motifs in mu opioid receptor gene promoters. Gene 2011, 471:27-36.
    • (2011) Gene , vol.471 , pp. 27-36
    • Choe, C.Y.1    Dong, J.2    Law, P.Y.3    Loh, H.H.4
  • 8
    • 36848999709 scopus 로고    scopus 로고
    • Novel function of the poly (C)-binding protein alpha CP3 as a transcriptional repressor of the mu opioid receptor gene
    • Choi H.S., et al. Novel function of the poly (C)-binding protein alpha CP3 as a transcriptional repressor of the mu opioid receptor gene. FASEB J. 2007, 21:3963-3973.
    • (2007) FASEB J. , vol.21 , pp. 3963-3973
    • Choi, H.S.1
  • 9
    • 2442599792 scopus 로고    scopus 로고
    • Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases
    • Corbett K.D., Berger J.M. Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct. 2004, 33:95-118.
    • (2004) Annu. Rev. Biophys. Biomol. Struct. , vol.33 , pp. 95-118
    • Corbett, K.D.1    Berger, J.M.2
  • 10
    • 78650177865 scopus 로고    scopus 로고
    • Poly(ADP-ribose) polymerase signaling of topoisomerase 1-dependent DNA damage in carcinoma cells
    • D'Onofrio G., et al. Poly(ADP-ribose) polymerase signaling of topoisomerase 1-dependent DNA damage in carcinoma cells. Biochem. Pharmacol. 2011, 81:194-202.
    • (2011) Biochem. Pharmacol. , vol.81 , pp. 194-202
    • D'Onofrio, G.1
  • 11
    • 0026555506 scopus 로고
    • Control of bacterial DNA supercoiling
    • Drlica K. Control of bacterial DNA supercoiling. Mol. Microbiol. 1992, 6:425-433.
    • (1992) Mol. Microbiol. , vol.6 , pp. 425-433
    • Drlica, K.1
  • 12
    • 0035725909 scopus 로고    scopus 로고
    • A SERS probe of adenyl residues available for intermolecular interactions. Part 1-adenyl fingerprint
    • Grajcar L., Baron M.H. A SERS probe of adenyl residues available for intermolecular interactions. Part 1-adenyl fingerprint. J. Raman Spectrosc. 2001, 32:912-918.
    • (2001) J. Raman Spectrosc. , vol.32 , pp. 912-918
    • Grajcar, L.1    Baron, M.H.2
  • 13
    • 0034730371 scopus 로고    scopus 로고
    • Searching genomes for sequences with the potential to form intrastrand triple helices
    • Hoyne P.R., Edwards L.M., Viari A., Maher L.J. Searching genomes for sequences with the potential to form intrastrand triple helices. J. Mol. Biol. 2000, 302:797-809.
    • (2000) J. Mol. Biol. , vol.302 , pp. 797-809
    • Hoyne, P.R.1    Edwards, L.M.2    Viari, A.3    Maher, L.J.4
  • 14
    • 0023780437 scopus 로고
    • Single strands, triple strands, and kinks in H-DNA
    • Htun H., Dahlberg J.E. Single strands, triple strands, and kinks in H-DNA. Science 1988, 241:1791-1796.
    • (1988) Science , vol.241 , pp. 1791-1796
    • Htun, H.1    Dahlberg, J.E.2
  • 15
    • 0001731921 scopus 로고
    • Roles of supercoiled DNA structure in DNA transactions
    • Kanaar R., Cozzarelli N.R. Roles of supercoiled DNA structure in DNA transactions. Curr. Opin. Struct. Biol. 1992, 2:369-378.
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 369-378
    • Kanaar, R.1    Cozzarelli, N.R.2
  • 16
    • 0035808481 scopus 로고    scopus 로고
    • Single-stranded DNA-binding complex involved in transcriptional regulation of mouse mu-opioid receptor gene
    • Ko J.L., Loh H.H. Single-stranded DNA-binding complex involved in transcriptional regulation of mouse mu-opioid receptor gene. J. Biol. Chem. 2001, 276:788-795.
    • (2001) J. Biol. Chem. , vol.276 , pp. 788-795
    • Ko, J.L.1    Loh, H.H.2
  • 17
    • 15844383117 scopus 로고    scopus 로고
    • Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase 1B
    • Koster D.A., Croquetter V., Decker C., Shuman S., Dekker N.H. Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase 1B. Nature 2005, 434:671-674.
    • (2005) Nature , vol.434 , pp. 671-674
    • Koster, D.A.1    Croquetter, V.2    Decker, C.3    Shuman, S.4    Dekker, N.H.5
  • 18
    • 42449159316 scopus 로고    scopus 로고
    • Single-molecule observations of topotecan-mediated TopIB activity at a unique DNA sequence
    • Koster D.A., et al. Single-molecule observations of topotecan-mediated TopIB activity at a unique DNA sequence. Nucleic Acids Res. 2008, 36:2301-2310.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2301-2310
    • Koster, D.A.1
  • 19
    • 38849132828 scopus 로고    scopus 로고
    • The functional response of upstream DNA to dynamic supercoiling in vivo
    • Kouzine F., Sanford S., Elisha-Feil Z., Levens D. The functional response of upstream DNA to dynamic supercoiling in vivo. Nat. Struct. Mol. Biol. 2008, 15:146-154.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 146-154
    • Kouzine, F.1    Sanford, S.2    Elisha-Feil, Z.3    Levens, D.4
  • 20
    • 0025332173 scopus 로고
    • Molecular characterization of opioid receptors
    • Loh H.H., Smith A.P. Molecular characterization of opioid receptors. Annu. Rev. Pharmacol. Toxicol. 1990, 30:123-147.
    • (1990) Annu. Rev. Pharmacol. Toxicol. , vol.30 , pp. 123-147
    • Loh, H.H.1    Smith, A.P.2
  • 21
    • 0031017249 scopus 로고    scopus 로고
    • Visualization of supercoiled DNA with atomic force microscopy in situ
    • Lyubchenko Y.L., Shlyakhtenko L.S. Visualization of supercoiled DNA with atomic force microscopy in situ. Proc. Natl. Acad. Sci. U. S. A. 1997, 94:496-501.
    • (1997) Proc. Natl. Acad. Sci. U. S. A. , vol.94 , pp. 496-501
    • Lyubchenko, Y.L.1    Shlyakhtenko, L.S.2
  • 23
    • 28344436049 scopus 로고    scopus 로고
    • Alternative treatments of breakthrough pain in patients receiving spinal analgesics for cancer pain
    • Mercadante S., Arcuri E., Ferrera P., Villari P., Mangione S. Alternative treatments of breakthrough pain in patients receiving spinal analgesics for cancer pain. J. Pain Symptom Manage. 2005, 30:485-491.
    • (2005) J. Pain Symptom Manage. , vol.30 , pp. 485-491
    • Mercadante, S.1    Arcuri, E.2    Ferrera, P.3    Villari, P.4    Mangione, S.5
  • 24
    • 0020664943 scopus 로고
    • In vivo catenation and decatenation of DNA
    • Mertz J.E., Miller T.J. In vivo catenation and decatenation of DNA. Mol. Cell. Biol. 1983, 3:126-131.
    • (1983) Mol. Cell. Biol. , vol.3 , pp. 126-131
    • Mertz, J.E.1    Miller, T.J.2
  • 25
    • 0029148328 scopus 로고
    • Structure and dynamics of interstrand guanine association in quadruplex telomeric DNA
    • Miura T., Thomas G.J. Structure and dynamics of interstrand guanine association in quadruplex telomeric DNA. Biochemistry 1995, 34:9645-9654.
    • (1995) Biochemistry , vol.34 , pp. 9645-9654
    • Miura, T.1    Thomas, G.J.2
  • 26
    • 0032483540 scopus 로고    scopus 로고
    • Mu-opioid receptor activates signaling pathways implicated in cell survival and translational control
    • Polakiewicz R.D., Schieferl S.M., Gingras A., Sonenberg N., Comb M.J. Mu-opioid receptor activates signaling pathways implicated in cell survival and translational control. J. Biol. Chem. 1998, 273:23534-23541.
    • (1998) J. Biol. Chem. , vol.273 , pp. 23534-23541
    • Polakiewicz, R.D.1    Schieferl, S.M.2    Gingras, A.3    Sonenberg, N.4    Comb, M.J.5
  • 27
    • 0028949206 scopus 로고
    • The mechanisms of DNA topoisomerases
    • Roca J. The mechanisms of DNA topoisomerases. Trends Biochem. Sci. 1995, 20:156-160.
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 156-160
    • Roca, J.1
  • 29
    • 0029036249 scopus 로고
    • Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA
    • Schroth G.P., Ho P.S. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Res. 1995, 23:1977-1983.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1977-1983
    • Schroth, G.P.1    Ho, P.S.2
  • 30
    • 0037154120 scopus 로고    scopus 로고
    • DNA secondary structure and Raman markers of supercoiling in Escherichia coli plasmid pUC 19
    • Serban D., Benevides J.M., Thomas G.J. DNA secondary structure and Raman markers of supercoiling in Escherichia coli plasmid pUC 19. Biochemistry 2002, 41:847-853.
    • (2002) Biochemistry , vol.41 , pp. 847-853
    • Serban, D.1    Benevides, J.M.2    Thomas, G.J.3
  • 31
    • 0033583052 scopus 로고    scopus 로고
    • Inhibition of DNA supercoiling dependent transcriptionl activation by a distant B-DNA to Z-DNA transition
    • Sheridan S.D., Benham C.J., Hatfield G.W. Inhibition of DNA supercoiling dependent transcriptionl activation by a distant B-DNA to Z-DNA transition. J. Biol. Chem. 1999, 274:8169-8174.
    • (1999) J. Biol. Chem. , vol.274 , pp. 8169-8174
    • Sheridan, S.D.1    Benham, C.J.2    Hatfield, G.W.3
  • 32
    • 0041659217 scopus 로고    scopus 로고
    • Morphine suppresses lymphocyte apoptosis by blocking p53-mediated death signaling
    • Suzuki S., Chuang L.F., Doi R.H., Chuang R.Y. Morphine suppresses lymphocyte apoptosis by blocking p53-mediated death signaling. Biochem. Biophys. Res. Commun. 2003, 308:802-808.
    • (2003) Biochem. Biophys. Res. Commun. , vol.308 , pp. 802-808
    • Suzuki, S.1    Chuang, L.F.2    Doi, R.H.3    Chuang, R.Y.4
  • 33
    • 65649089445 scopus 로고    scopus 로고
    • The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression
    • Sun D., Hurley L.H. The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression. J. Med. Chem. 2009, 52:2863-2874.
    • (2009) J. Med. Chem. , vol.52 , pp. 2863-2874
    • Sun, D.1    Hurley, L.H.2
  • 34
    • 33846070731 scopus 로고    scopus 로고
    • Do DNA triple helices or quadruplexes have a role in transcription?
    • In Ohyama, T. (ed.), DNA conformation and transcription. Landes Bioscience, Georgetown, TX, and Springer, New York.
    • Van Dyke, M.W., 2005. Do DNA triple helices or quadruplexes have a role in transcription? In Ohyama, T. (ed.), DNA conformation and transcription. Landes Bioscience, Georgetown, TX, and Springer, New York, pp. 105-126.
    • (2005) , pp. 105-126
    • Van Dyke, M.W.1
  • 35
    • 0030714035 scopus 로고    scopus 로고
    • Cross-species characterization of the promoter region of the cystic fibrosis transmembrane conductance regulator gene reveals multiple levels of regulation
    • Vuillaumier S., et al. Cross-species characterization of the promoter region of the cystic fibrosis transmembrane conductance regulator gene reveals multiple levels of regulation. Biochem. J. 1997, 327:651-662.
    • (1997) Biochem. J. , vol.327 , pp. 651-662
    • Vuillaumier, S.1
  • 36
    • 0028943579 scopus 로고
    • Observation of the hydration-dependent conformation of the (dG)20. (dG)20(dC) 20 oligonucleotide triplex using FTIR spectroscopy
    • White A.P., Powell J.W. Observation of the hydration-dependent conformation of the (dG)20. (dG)20(dC) 20 oligonucleotide triplex using FTIR spectroscopy. Biochemistry 1995, 34:1137-1142.
    • (1995) Biochemistry , vol.34 , pp. 1137-1142
    • White, A.P.1    Powell, J.W.2
  • 37
    • 77952301118 scopus 로고    scopus 로고
    • DNA supercoiling and its role in DNA decatenation and unknotting
    • Witz G., Stasiak A. DNA supercoiling and its role in DNA decatenation and unknotting. Nucleic Acids Res. 2010, 38:2119-2133.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2119-2133
    • Witz, G.1    Stasiak, A.2
  • 38
    • 0028858007 scopus 로고
    • Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli
    • Zechiedrich E.L., Cozzarelli N.R. Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli. Genes Dev. 1995, 9:2859-2869.
    • (1995) Genes Dev. , vol.9 , pp. 2859-2869
    • Zechiedrich, E.L.1    Cozzarelli, N.R.2
  • 39
    • 73749085274 scopus 로고    scopus 로고
    • Non-B DNA structure-induced genetic instability and evolution
    • Zhao J., Bacolla A., Wang G., Vasquez K.M. Non-B DNA structure-induced genetic instability and evolution. Cell. Mol. Life Sci. 2010, 67:43-63.
    • (2010) Cell. Mol. Life Sci. , vol.67 , pp. 43-63
    • Zhao, J.1    Bacolla, A.2    Wang, G.3    Vasquez, K.M.4


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