-
2
-
-
33750456519
-
Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
-
DOI 10.1016/j.cell.2006.09.026, PII S0092867406012748
-
J.V. Olsen, B. Blagoev, F. Gnad, B. Macek, C. Kumar, P. Mortensen, and M. Mann Global, in vivo, and site-specific phosphorylation dynamics in signaling networks Cell 127 2006 635 648 (Pubitemid 44647421)
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
3
-
-
39749166860
-
Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation
-
DOI 10.1074/mcp.M700311-MCP200
-
B. Macek, F. Gnad, B. Soufi, C. Kumar, J.V. Olsen, I. Mijakovic, and M. Mann Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation Mol. Cell. Proteomics 7 2008 299 307 (Pubitemid 351298444)
-
(2008)
Molecular and Cellular Proteomics
, vol.7
, Issue.2
, pp. 299-307
-
-
Macek, B.1
Gnad, F.2
Soufi, B.3
Kumar, C.4
Olsen, J.V.5
Mijakovic, I.6
Mann, M.7
-
4
-
-
70350340056
-
Serine/threonine phosphatases: Mechanism through structure
-
Y. Shi Serine/threonine phosphatases: mechanism through structure Cell 139 2009 468 484
-
(2009)
Cell
, vol.139
, pp. 468-484
-
-
Shi, Y.1
-
5
-
-
0030465532
-
Crystal structure of the protein serine/threonine phosphatase 2C at 2.0 A resolution
-
A.K. Das, N.R. Helps, P.T. Cohen, and D. Barford Crystal structure of the protein serine/threonine phosphatase 2C at 2.0 A resolution EMBO J. 15 1996 6798 6809
-
(1996)
EMBO J.
, vol.15
, pp. 6798-6809
-
-
Das, A.K.1
Helps, N.R.2
Cohen, P.T.3
Barford, D.4
-
6
-
-
71449125748
-
A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors
-
K. Melcher, L.M. Ng, X.E. Zhou, F.F. Soon, Y. Xu, K.M. Suino-Powell, S.Y. Park, J.J. Weiner, H. Fujii, V. Chinnusamy, A. Kovach, J. Li, Y. Wang, J. Li, F.C. Peterson, D.R. Jensen, E.L. Yong, B.F. Volkman, S.R. Cutler, J.K. Zhu, and H.E. Xu A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors Nature 462 2009 602 608
-
(2009)
Nature
, vol.462
, pp. 602-608
-
-
Melcher, K.1
Ng, L.M.2
Zhou, X.E.3
Soon, F.F.4
Xu, Y.5
Suino-Powell, K.M.6
Park, S.Y.7
Weiner, J.J.8
Fujii, H.9
Chinnusamy, V.10
Kovach, A.11
Li, J.12
Wang, Y.13
Li, J.14
Peterson, F.C.15
Jensen, D.R.16
Yong, E.L.17
Volkman, B.F.18
Cutler, S.R.19
Zhu, J.K.20
Xu, H.E.21
more..
-
7
-
-
38349115371
-
Structural analysis of the PP2C phosphatase tPphA from Thermosynechococcus elongatus: A flexible flap subdomain controls access to the catalytic site
-
C. Schlicker, O. Fokina, N. Kloft, T. Grune, S. Becker, G.M. Sheldrick, and K. Forchhammer Structural analysis of the PP2C phosphatase tPphA from Thermosynechococcus elongatus: a flexible flap subdomain controls access to the catalytic site J. Mol. Biol. 376 2008 570 581
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 570-581
-
-
Schlicker, C.1
Fokina, O.2
Kloft, N.3
Grune, T.4
Becker, S.5
Sheldrick, G.M.6
Forchhammer, K.7
-
8
-
-
0025965062
-
Identification of regulatory residues of the yeast adenylyl cyclase
-
G. Feger, E. De Vendittis, A. Vitelli, P. Masturzo, R. Zahn, A.C. Verrotti, C. Kavounis, G.P. Pal, and O. Fasano Identification of regulatory residues of the yeast adenylyl cyclase EMBO J. 10 1991 349 359 (Pubitemid 21905485)
-
(1991)
EMBO Journal
, vol.10
, Issue.2
, pp. 349-359
-
-
Feger, G.1
De Vendittis, E.2
Vitelli, A.3
Masturzo, P.4
Zahn, R.5
Verrotti, A.C.6
Kavounis, C.7
Pal, G.P.8
Fasano, O.9
-
9
-
-
35748940938
-
Structural and Binding Studies of the Three-metal Center in Two Mycobacterial PPM Ser/Thr Protein Phosphatases
-
DOI 10.1016/j.jmb.2007.09.076, PII S0022283607012880
-
A. Wehenkel, M. Bellinzoni, F. Schaeffer, A. Villarino, and P.M. Alzari Structural and binding studies of the three-metal center in two mycobacterial PPM Ser/Thr protein phosphatases J. Mol. Biol. 374 2007 890 898 (Pubitemid 350052094)
-
(2007)
Journal of Molecular Biology
, vol.374
, Issue.4
, pp. 890-898
-
-
Wehenkel, A.1
Bellinzoni, M.2
Schaeffer, F.3
Villarino, A.4
Alzari, P.M.5
-
10
-
-
34249827271
-
Structure of Streptococcus agalactiae serine/threonine phosphatase: The subdomain conformation is coupled to the binding of a third metal ion
-
DOI 10.1111/j.1742-4658.2007.05845.x
-
M.K. Rantanen, L. Lehtio, L. Rajagopal, C.E. Rubens, and A. Goldman Structure of Streptococcus agalactiae serine/threonine phosphatase. The subdomain conformation is coupled to the binding of a third metal ion FEBS J. 274 2007 3128 3137 (Pubitemid 46849094)
-
(2007)
FEBS Journal
, vol.274
, Issue.12
, pp. 3128-3137
-
-
Rantanen, M.K.1
Lehtio, L.2
Rajagopal, L.3
Rubens, C.E.4
Goldman, A.5
-
11
-
-
34447299430
-
Insights into the Catalytic Mechanism of PPM Ser/Thr Phosphatases from the Atomic Resolution Structures of a Mycobacterial Enzyme
-
DOI 10.1016/j.str.2007.06.002, PII S0969212607002079
-
M. Bellinzoni, A. Wehenkel, W. Shepard, and P.M. Alzari Insights into the catalytic mechanism of PPM Ser/Thr phosphatases from the atomic resolution structures of a mycobacterial enzyme Structure 15 2007 863 872 (Pubitemid 47053886)
-
(2007)
Structure
, vol.15
, Issue.7
, pp. 863-872
-
-
Bellinzoni, M.1
Wehenkel, A.2
Shepard, W.3
Alzari, P.M.4
-
12
-
-
78650153662
-
Pathogen-mediated posttranslational modifications: A re-emerging field
-
D. Ribet, and P. Cossart Pathogen-mediated posttranslational modifications: a re-emerging field Cell 143 2010 694 702
-
(2010)
Cell
, vol.143
, pp. 694-702
-
-
Ribet, D.1
Cossart, P.2
-
13
-
-
0033964846
-
Phosphatases and kinases delivered to the host cell by bacterial pathogens
-
DOI 10.1016/S0966-842X(99)01657-1, PII S0966842X99016571
-
R. DeVinney, O. Steele-Mortimer, and B.B. Finlay Phosphatases and kinases delivered to the host cell by bacterial pathogens Trends Microbiol. 8 2000 29 33 (Pubitemid 30066381)
-
(2000)
Trends in Microbiology
, vol.8
, Issue.1
, pp. 29-33
-
-
DeVinney, R.1
Steele-Mortimer, O.2
Finlay, B.B.3
-
14
-
-
65349094083
-
Communication between Toxoplasma gondii and its host: Impact on parasite growth, development, immune evasion, and virulence
-
I.J. Blader, and J.P. Saeij Communication between Toxoplasma gondii and its host: impact on parasite growth, development, immune evasion, and virulence APMIS 117 2009 458 476
-
(2009)
APMIS
, vol.117
, pp. 458-476
-
-
Blader, I.J.1
Saeij, J.P.2
-
15
-
-
33947714944
-
Bacterial Interference of Ubiquitination and Deubiquitination
-
DOI 10.1016/j.chom.2007.02.003, PII S1931312807000078
-
A. Rytkonen, and D.W. Holden Bacterial interference of ubiquitination and deubiquitination Cell. Host Microbe 1 2007 13 22 (Pubitemid 46506012)
-
(2007)
Cell Host and Microbe
, vol.1
, Issue.1
, pp. 13-22
-
-
Rytkonen, A.1
Holden, D.W.2
-
16
-
-
79954423286
-
Adenylylation: Renaissance of a forgotten post-translational modification
-
A. Itzen, W. Blankenfeldt, and R.S. Goody Adenylylation: renaissance of a forgotten post-translational modification Trends Biochem. Sci. 36 2011 221 228
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 221-228
-
-
Itzen, A.1
Blankenfeldt, W.2
Goody, R.S.3
-
18
-
-
0014141788
-
Regulation of glutamine synthetase. 8. ATP: Glutamine synthetase adenylyltransferase, an enzyme that catalyzes alterations in the regulatory properties of glutamine synthetase
-
H.S. Kingdon, B.M. Shapiro, and E.R. Stadtman Regulation of glutamine synthetase. 8. ATP: glutamine synthetase adenylyltransferase, an enzyme that catalyzes alterations in the regulatory properties of glutamine synthetase Proc. Natl. Acad. Sci. USA 58 1967 1703 1710
-
(1967)
Proc. Natl. Acad. Sci. USA
, vol.58
, pp. 1703-1710
-
-
Kingdon, H.S.1
Shapiro, B.M.2
Stadtman, E.R.3
-
19
-
-
2342628394
-
Structure of the N-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase
-
DOI 10.1016/j.str.2004.02.029, PII S096921260400111X
-
Y. Xu, R. Zhang, A. Joachimiak, P.D. Carr, T. Huber, S.G. Vasudevan, and D.L. Ollis Structure of the N-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase Structure 12 2004 861 869 (Pubitemid 38595774)
-
(2004)
Structure
, vol.12
, Issue.5
, pp. 861-869
-
-
Xu, Y.1
Zhang, R.2
Joachimiak, A.3
Carr, P.D.4
Huber, T.5
Vasudevan, S.G.6
Ollis, D.L.7
-
20
-
-
77949324163
-
Structure of the adenylylation domain of E. coli glutamine synthetase adenylyl transferase: Evidence for gene duplication and evolution of a new active site
-
Y. Xu, P.D. Carr, S.G. Vasudevan, and D.L. Ollis Structure of the adenylylation domain of E. coli glutamine synthetase adenylyl transferase: evidence for gene duplication and evolution of a new active site J. Mol. Biol. 396 2010 773 784
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 773-784
-
-
Xu, Y.1
Carr, P.D.2
Vasudevan, S.G.3
Ollis, D.L.4
-
21
-
-
57649155916
-
Doc of prophage P1 is inhibited by its antitoxin partner Phd through fold complementation
-
A. Garcia-Pino, M. Christensen-Dalsgaard, L. Wyns, M. Yarmolinsky, R.D. Magnuson, K. Gerdes, and R. Loris Doc of prophage P1 is inhibited by its antitoxin partner Phd through fold complementation J. Biol. Chem. 283 2008 30821 30827
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 30821-30827
-
-
Garcia-Pino, A.1
Christensen-Dalsgaard, M.2
Wyns, L.3
Yarmolinsky, M.4
Magnuson, R.D.5
Gerdes, K.6
Loris, R.7
-
22
-
-
77953766744
-
Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain
-
P. Luong, L.N. Kinch, C.A. Brautigam, N.V. Grishin, D.R. Tomchick, and K. Orth Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain J. Biol. Chem. 285 2010 20155 20163
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 20155-20163
-
-
Luong, P.1
Kinch, L.N.2
Brautigam, C.A.3
Grishin, N.V.4
Tomchick, D.R.5
Orth, K.6
-
23
-
-
67149136177
-
Fido, a novel AMPylation domain common to fic, doc, and AvrB
-
L.N. Kinch, M.L. Yarbrough, K. Orth, and N.V. Grishin Fido, a novel AMPylation domain common to fic, doc, and AvrB PLoS One 4 2009 e5818
-
(2009)
PLoS One
, vol.4
, pp. 5818
-
-
Kinch, L.N.1
Yarbrough, M.L.2
Orth, K.3
Grishin, N.V.4
-
24
-
-
63649139064
-
The fic domain: Regulation of cell signaling by adenylylation
-
C.A. Worby, S. Mattoo, R.P. Kruger, L.B. Corbeil, A. Koller, J.C. Mendez, B. Zekarias, C. Lazar, and J.E. Dixon The fic domain: regulation of cell signaling by adenylylation Mol. Cell 34 2009 93 103
-
(2009)
Mol. Cell
, vol.34
, pp. 93-103
-
-
Worby, C.A.1
Mattoo, S.2
Kruger, R.P.3
Corbeil, L.B.4
Koller, A.5
Mendez, J.C.6
Zekarias, B.7
Lazar, C.8
Dixon, J.E.9
-
25
-
-
77955872117
-
The Legionella effector protein DrrA AMPylates the membrane traffic regulator Rab1b
-
M.P. Muller, H. Peters, J. Blumer, W. Blankenfeldt, R.S. Goody, and A. Itzen The Legionella effector protein DrrA AMPylates the membrane traffic regulator Rab1b Science 329 2010 946 949
-
(2010)
Science
, vol.329
, pp. 946-949
-
-
Muller, M.P.1
Peters, H.2
Blumer, J.3
Blankenfeldt, W.4
Goody, R.S.5
Itzen, A.6
-
26
-
-
79960699136
-
De-AMPylation of the small GTPase Rab1 by the pathogen Legionella pneumophila
-
M.R. Neunuebel, Y. Chen, A.H. Gaspar, P.S. Backlund Jr, A. Yergey, and M.P. Machner De-AMPylation of the small GTPase Rab1 by the pathogen Legionella pneumophila Science 333 2011 453 456
-
(2011)
Science
, vol.333
, pp. 453-456
-
-
Neunuebel, M.R.1
Chen, Y.2
Gaspar, A.H.3
Backlund Jr., P.S.4
Yergey, A.5
MacHner, M.P.6
-
27
-
-
79960929331
-
Legionella pneumophila SidD is a deAMPylase that modifies Rab1
-
Y. Tan, and Z. Luo Legionella pneumophila SidD is a deAMPylase that modifies Rab1 Nature. 475 2011 506 509
-
(2011)
Nature.
, vol.475
, pp. 506-509
-
-
Tan, Y.1
Luo, Z.2
-
28
-
-
78651319979
-
Ongoing and future developments at the Universal Protein Resource
-
UniProt. Consortium Ongoing and future developments at the Universal Protein Resource Nucleic Acids Res. 39 2011 D214 D219
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
-
29
-
-
77955591777
-
Hidden Markov model speed heuristic and iterative HMM search procedure
-
L.S. Johnson, S.R. Eddy, and E. Portugaly Hidden Markov model speed heuristic and iterative HMM search procedure BMC Bioinform. 11 2010 431
-
(2010)
BMC Bioinform.
, vol.11
, pp. 431
-
-
Johnson, L.S.1
Eddy, S.R.2
Portugaly, E.3
-
30
-
-
33846062023
-
Database resources of the National Center for Biotechnology Information
-
DOI 10.1093/nar/gkl1031
-
D.L. Wheeler, T. Barrett, D.A. Benson, S.H. Bryant, K. Canese, V. Chetvernin, D.M. Church, M. DiCuccio, R. Edgar, S. Federhen, L.Y. Geer, Y. Kapustin, O. Khovayko, D. Landsman, D.J. Lipman, T.L. Madden, D.R. Maglott, J. Ostell, V. Miller, K.D. Pruitt, G.D. Schuler, E. Sequeira, S.T. Sherry, K. Sirotkin, A. Souvorov, G. Starchenko, R.L. Tatusov, T.A. Tatusova, L. Wagner, and E. Yaschenko Database resources of the National Center for Biotechnology Information Nucleic Acids Res. 35 2007 D5 D12 (Pubitemid 46056160)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
DiCuccio, M.8
Edgar, R.9
Federhen, S.10
Geer, L.Y.11
Kapustin, Y.12
Khovayko, O.13
Landsman, D.14
Lipman, D.J.15
Madden, T.L.16
Maglott, D.R.17
Ostell, J.18
Miller, V.19
Pruitt, K.D.20
Schuler, G.D.21
Sequeira, E.22
Sherry, S.T.23
Sirotkin, K.24
Souvorov, A.25
Starchenko, G.26
Tatusov, R.L.27
Tatusova, T.A.28
Wagner, L.29
Yaschenko, E.30
more..
-
31
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
DOI 10.1093/bioinformatics/bti125
-
J. Soding Protein homology detection by HMM-HMM comparison Bioinformatics 21 2005 951 960 (Pubitemid 40467915)
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 951-960
-
-
Soding, J.1
-
32
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
DOI 10.1093/nar/gki408
-
J. Soding, A. Biegert, and A.N. Lupas The HHpred interactive server for protein homology detection and structure prediction Nucleic Acids Res. 33 2005 W244 W248 (Pubitemid 44529917)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISSUE
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
33
-
-
0043123216
-
GeneSilico protein structure prediction meta-server
-
DOI 10.1093/nar/gkg557
-
M.A. Kurowski, and J.M. Bujnicki GeneSilico protein structure prediction meta-server Nucleic Acids Res. 31 2003 3305 3307 (Pubitemid 37442145)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3305-3307
-
-
Kurowski, M.A.1
Bujnicki, J.M.2
-
34
-
-
28444454499
-
Pcons5: Combining consensus, structural evaluation and fold recognition scores
-
DOI 10.1093/bioinformatics/bti702
-
B. Wallner, and A. Elofsson Pcons5: combining consensus, structural evaluation and fold recognition scores Bioinformatics 21 2005 4248 4254 (Pubitemid 41724304)
-
(2005)
Bioinformatics
, vol.21
, Issue.23
, pp. 4248-4254
-
-
Wallner, B.1
Elofsson, A.2
-
35
-
-
33746218852
-
MUSTANG: A multiple structural alignment algorithm
-
DOI 10.1002/prot.20921
-
A.S. Konagurthu, J.C. Whisstock, P.J. Stuckey, and A.M. Lesk MUSTANG: a multiple structural alignment algorithm Proteins 64 2006 559 574 (Pubitemid 44100724)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.64
, Issue.3
, pp. 559-574
-
-
Konagurthu, A.S.1
Whisstock, J.C.2
Stuckey, P.J.3
Lesk, A.M.4
-
36
-
-
30344458781
-
Optimization of multiple-sequence alignment based on multiple-structure alignment
-
DOI 10.1002/prot.20665
-
M. Shatsky, R. Nussinov, and H.J. Wolfson Optimization of multiple-sequence alignment based on multiple-structure alignment Proteins 62 2006 209 217 (Pubitemid 43063019)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.62
, Issue.1
, pp. 209-217
-
-
Shatsky, M.1
Nussinov, R.2
Wolfson, H.J.3
-
37
-
-
3242887525
-
STRIDE: A web server for secondary structure assignment from known atomic coordinates of proteins
-
DOI 10.1093/nar/gkh429
-
M. Heinig, and D. Frishman STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins Nucleic Acids Res. 32 2004 W500 W502 (Pubitemid 38997383)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISSUE
-
-
Heinig, M.1
Frishman, D.2
-
38
-
-
33749578940
-
Statistical potential for assessment and prediction of protein structures
-
DOI 10.1110/ps.062416606
-
M.Y. Shen, and A. Sali Statistical potential for assessment and prediction of protein structures Protein Sci. 15 2006 2507 2524 (Pubitemid 44771688)
-
(2006)
Protein Science
, vol.15
, Issue.11
, pp. 2507-2524
-
-
Shen, M.-Y.1
Sali, A.2
-
39
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
R.A. Laskowski, M.W. MacArthur, D.S. Moss, and J.M. Thornton PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Cryst. 26 1993 283 291
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
40
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
DOI 10.1002/prot.340170404
-
M.J. Sippl Recognition of errors in three-dimensional structures of proteins Proteins 17 1993 355 362 (Pubitemid 23358545)
-
(1993)
Proteins: Structure, Function and Genetics
, vol.17
, Issue.4
, pp. 355-362
-
-
Sippl, M.J.1
-
41
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
R. Luthy, J.U. Bowie, and D. Eisenberg Assessment of protein models with three-dimensional profiles Nature 356 1992 83 85
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
42
-
-
65449188232
-
Jalview Version 2 - A multiple sequence alignment editor and analysis workbench
-
A.M. Waterhouse, J.B. Procter, D.M. Martin, M. Clamp, and G.J. Barton Jalview Version 2 - a multiple sequence alignment editor and analysis workbench Bioinformatics 25 2009 1189 1191
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
43
-
-
75549090603
-
The Pfam protein families database
-
R.D. Finn, J. Mistry, J. Tate, P. Coggill, A. Heger, J.E. Pollington, O.L. Gavin, P. Gunasekaran, G. Ceric, K. Forslund, L. Holm, E.L. Sonnhammer, S.R. Eddy, and A. Bateman The Pfam protein families database Nucleic Acids Res. 38 2010 D211 D222
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
44
-
-
78651285748
-
CDD: A conserved domain database for the functional annotation of proteins
-
A. Marchler-Bauer, S. Lu, J.B. Anderson, F. Chitsaz, M.K. Derbyshire, C. DeWeese-Scott, J.H. Fong, L.Y. Geer, R.C. Geer, N.R. Gonzales, M. Gwadz, D.I. Hurwitz, J.D. Jackson, Z. Ke, C.J. Lanczycki, F. Lu, G.H. Marchler, M. Mullokandov, M.V. Omelchenko, C.L. Robertson, J.S. Song, N. Thanki, R.A. Yamashita, D. Zhang, N. Zhang, C. Zheng, and S.H. Bryant CDD: a conserved domain database for the functional annotation of proteins Nucleic Acids Res. 39 2011 D225 D229
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
Deweese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
-
45
-
-
33846065944
-
Acyl carrier protein phosphodiesterase (AcpH) of Escherichia coli is a non-canonical member of the HD phosphatase/phosphodiesterase family
-
DOI 10.1021/bi061789e
-
J. Thomas, D.J. Rigden, and J.E. Cronan Acyl carrier protein phosphodiesterase (AcpH) of Escherichia coli is a non-canonical member of the HD phosphatase/phosphodiesterase family Biochemistry 46 2007 129 136 (Pubitemid 46067742)
-
(2007)
Biochemistry
, vol.46
, Issue.1
, pp. 129-136
-
-
Thomas, J.1
Rigden, D.J.2
Cronan, J.E.3
-
46
-
-
3042686936
-
A distant evolutionary relationship between GPI-specific phospholipase D and bacterial phosphatidylcholine-preferring phospholipase C
-
DOI 10.1016/j.febslet.2004.05.071, PII S0014579304007094
-
D.J. Rigden A distant evolutionary relationship between GPI-specific phospholipase D and bacterial phosphatidylcholine-preferring phospholipase C FEBS Lett. 569 2004 229 234 (Pubitemid 38844623)
-
(2004)
FEBS Letters
, vol.569
, Issue.1-3
, pp. 229-234
-
-
Rigden, D.J.1
-
47
-
-
77649198508
-
Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease
-
C. Cazalet, L. Gomez-Valero, C. Rusniok, M. Lomma, D. Dervins-Ravault, H.J. Newton, F.M. Sansom, S. Jarraud, N. Zidane, L. Ma, C. Bouchier, J. Etienne, E.L. Hartland, and C. Buchrieser Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease PLoS Genet. 6 2010 e1000851
-
(2010)
PLoS Genet.
, vol.6
, pp. 1000851
-
-
Cazalet, C.1
Gomez-Valero, L.2
Rusniok, C.3
Lomma, M.4
Dervins-Ravault, D.5
Newton, H.J.6
Sansom, F.M.7
Jarraud, S.8
Zidane, N.9
Ma, L.10
Bouchier, C.11
Etienne, J.12
Hartland, E.L.13
Buchrieser, C.14
-
48
-
-
77957018907
-
The origins of eukaryotic-like proteins in Legionella pneumophila
-
M.N. Lurie-Weinberger, L. Gomez-Valero, N. Merault, G. Glockner, C. Buchrieser, and U. Gophna The origins of eukaryotic-like proteins in Legionella pneumophila Int. J. Med. Microbiol. 300 2010 470 481
-
(2010)
Int. J. Med. Microbiol.
, vol.300
, pp. 470-481
-
-
Lurie-Weinberger, M.N.1
Gomez-Valero, L.2
Merault, N.3
Glockner, G.4
Buchrieser, C.5
Gophna, U.6
-
49
-
-
27744546297
-
Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer
-
DOI 10.1128/JB.187.22.7716-7726.2005
-
K.S. de Felipe, S. Pampou, O.S. Jovanovic, C.D. Pericone, S.F. Ye, S. Kalachikov, and H.A. Shuman Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer J. Bacteriol. 187 2005 7716 7726 (Pubitemid 41587710)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.22
, pp. 7716-7726
-
-
De Felipe, K.S.1
Pampou, S.2
Jovanovic, O.S.3
Pericone, C.D.4
Ye, S.F.5
Kalachikov, S.6
Shuman, H.A.7
-
50
-
-
0032539674
-
Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome
-
DOI 10.1073/pnas.95.4.1669
-
G. Segal, M. Purcell, and H.A. Shuman Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome Proc. Natl. Acad. Sci. USA 95 1998 1669 1674 (Pubitemid 28103451)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.4
, pp. 1669-1674
-
-
Segal, G.1
Purcell, M.2
Shuman, H.A.3
-
51
-
-
0842289654
-
Molecular Determinants for ATP-binding in Proteins: A Data Mining and Quantum Chemical Analysis
-
DOI 10.1016/j.jmb.2003.12.056
-
L. Mao, Y. Wang, Y. Liu, and X. Hu Molecular determinants for ATP-binding in proteins: a data mining and quantum chemical analysis J. Mol. Biol. 336 2004 787 807 (Pubitemid 38183029)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.3
, pp. 787-807
-
-
Mao, L.1
Wang, Y.2
Liu, Y.3
Hu, X.4
-
52
-
-
34250199712
-
Crystal Structure of Pyruvate Dehydrogenase Phosphatase 1 and its Functional Implications
-
DOI 10.1016/j.jmb.2007.05.002, PII S0022283607006080
-
D.G. Vassylyev, and J. Symersky Crystal structure of pyruvate dehydrogenase phosphatase 1 and its functional implications J. Mol. Biol. 370 2007 417 426 (Pubitemid 46901072)
-
(2007)
Journal of Molecular Biology
, vol.370
, Issue.3
, pp. 417-426
-
-
Vassylyev, D.G.1
Symersky, J.2
-
53
-
-
0037779029
-
Probing the function of conserved residues in the serine/threonine phosphatase PP2Cα
-
DOI 10.1021/bi034074+
-
M.D. Jackson, C.C. Fjeld, and J.M. Denu Probing the function of conserved residues in the serine/threonine phosphatase PP2Calpha Biochemistry 42 2003 8513 8521 (Pubitemid 36875418)
-
(2003)
Biochemistry
, vol.42
, Issue.28
, pp. 8513-8521
-
-
Jackson, M.D.1
Fjeld, C.C.2
Denu, J.M.3
-
54
-
-
0032871834
-
Finding families for genomic ORFans
-
DOI 10.1093/bioinformatics/15.9.759
-
D. Fischer, and D. Eisenberg Finding families for genomic ORFans Bioinformatics 15 1999 759 762 (Pubitemid 29484338)
-
(1999)
Bioinformatics
, vol.15
, Issue.9
, pp. 759-762
-
-
Fischer, D.1
Eisenberg, D.2
-
55
-
-
78049436241
-
Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins
-
G.N. Schroeder, N.K. Petty, A. Mousnier, C.R. Harding, A.J. Vogrin, B. Wee, N.K. Fry, T.G. Harrison, H.J. Newton, N.R. Thomson, S.A. Beatson, G. Dougan, E.L. Hartland, and G. Frankel Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins J. Bacteriol. 192 2010 6001 6016
-
(2010)
J. Bacteriol.
, vol.192
, pp. 6001-6016
-
-
Schroeder, G.N.1
Petty, N.K.2
Mousnier, A.3
Harding, C.R.4
Vogrin, A.J.5
Wee, B.6
Fry, N.K.7
Harrison, T.G.8
Newton, H.J.9
Thomson, N.R.10
Beatson, S.A.11
Dougan, G.12
Hartland, E.L.13
Frankel, G.14
-
56
-
-
33750299450
-
Protein tyrosine phosphatases: From genes, to function, to disease
-
DOI 10.1038/nrm2039, PII NRM2039
-
N.K. Tonks Protein tyrosine phosphatases: from genes, to function, to disease Nat. Rev. Mol. Cell Biol. 7 2006 833 846 (Pubitemid 44627477)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.11
, pp. 833-846
-
-
Tonks, N.K.1
-
57
-
-
38749083839
-
The histidine phosphatase superfamily: Structure and function
-
DOI 10.1042/BJ20071097
-
D.J. Rigden The histidine phosphatase superfamily: structure and function Biochem. J. 409 2008 333 348 (Pubitemid 351184952)
-
(2008)
Biochemical Journal
, vol.409
, Issue.2
, pp. 333-348
-
-
Rigden, D.J.1
-
59
-
-
33644869304
-
Discovery of protein phosphatase 2C inhibitors by virtual screening
-
DOI 10.1021/jm051033y
-
J.P. Rogers, A.E. Beuscher 4th, M. Flajolet, T. McAvoy, A.C. Nairn, A.J. Olson, and P. Greengard Discovery of protein phosphatase 2C inhibitors by virtual screening J. Med. Chem. 49 2006 1658 1667 (Pubitemid 43376510)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.5
, pp. 1658-1667
-
-
Rogers, J.P.1
Beuscher IV, A.E.2
Flajolet, M.3
McAvoy, T.4
Nairn, A.C.5
Olson, A.J.6
Greengard, P.7
-
60
-
-
33750703180
-
Development of a substrate-based cyclic phosphopeptide inhibitor of protein phosphatase 2Cδ, Wip1
-
DOI 10.1021/bi061356b
-
H. Yamaguchi, S.R. Durell, H. Feng, Y. Bai, C.W. Anderson, and E. Appella Development of a substrate-based cyclic phosphopeptide inhibitor of protein phosphatase 2Cdelta, Wip1 Biochemistry 45 2006 13193 13202 (Pubitemid 44707680)
-
(2006)
Biochemistry
, vol.45
, Issue.44
, pp. 13193-13202
-
-
Yamaguchi, H.1
Durell, S.R.2
Feng, H.3
Bai, Y.4
Anderson, C.W.5
Appella, E.6
-
61
-
-
52749097713
-
Characterization of the active site and a unique uncompetitive inhibitor of the PPM1-type protein phosphatase PPM1D
-
Y. Chuman, H. Yagi, T. Fukuda, T. Nomura, M. Matsukizono, Y. Shimohigashi, and K. Sakaguchi Characterization of the active site and a unique uncompetitive inhibitor of the PPM1-type protein phosphatase PPM1D Protein Pept. Lett. 15 2008 938 948
-
(2008)
Protein Pept. Lett.
, vol.15
, pp. 938-948
-
-
Chuman, Y.1
Yagi, H.2
Fukuda, T.3
Nomura, T.4
Matsukizono, M.5
Shimohigashi, Y.6
Sakaguchi, K.7
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