-
1
-
-
3142764484
-
Genome-wide analysis of repressor element 1 silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) target genes
-
Bruce A.W., Donaldson I.J., Wood I.C., Yerbury S.A., Sadowski M.I., Chapman M., Göttgens B., Buckley N.J. Genome-wide analysis of repressor element 1 silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) target genes. Proc. Natl. Acad. Sci. USA 2004, 101:10458-10463.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10458-10463
-
-
Bruce, A.W.1
Donaldson, I.J.2
Wood, I.C.3
Yerbury, S.A.4
Sadowski, M.I.5
Chapman, M.6
Göttgens, B.7
Buckley, N.J.8
-
2
-
-
69449093703
-
Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein
-
Calarco J.A., Superina S., O'Hanlon D., Gabut M., Raj B., Pan Q., Skalska U., Clarke L., Gelinas D., van der Kooy D., et al. Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein. Cell 2009, 138:898-910.
-
(2009)
Cell
, vol.138
, pp. 898-910
-
-
Calarco, J.A.1
Superina, S.2
O'Hanlon, D.3
Gabut, M.4
Raj, B.5
Pan, Q.6
Skalska, U.7
Clarke, L.8
Gelinas, D.9
van der Kooy, D.10
-
3
-
-
79955041258
-
Networking in a global world: establishing functional connections between neural splicing regulators and their target transcripts
-
Calarco J.A., Zhen M., Blencowe B.J. Networking in a global world: establishing functional connections between neural splicing regulators and their target transcripts. RNA 2011, 17:775-791.
-
(2011)
RNA
, vol.17
, pp. 775-791
-
-
Calarco, J.A.1
Zhen, M.2
Blencowe, B.J.3
-
4
-
-
0031694917
-
NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis
-
Chen Z.F., Paquette A.J., Anderson D.J. NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis. Nat. Genet. 1998, 20:136-142.
-
(1998)
Nat. Genet.
, vol.20
, pp. 136-142
-
-
Chen, Z.F.1
Paquette, A.J.2
Anderson, D.J.3
-
5
-
-
0028934541
-
REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons
-
Chong J.A., Tapia-Ramírez J., Kim S., Toledo-Aral J.J., Zheng Y., Boutros M.C., Altshuller Y.M., Frohman M.A., Kraner S.D., Mandel G. REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons. Cell 1995, 80:949-957.
-
(1995)
Cell
, vol.80
, pp. 949-957
-
-
Chong, J.A.1
Tapia-Ramírez, J.2
Kim, S.3
Toledo-Aral, J.J.4
Zheng, Y.5
Boutros, M.C.6
Altshuller, Y.M.7
Frohman, M.A.8
Kraner, S.D.9
Mandel, G.10
-
6
-
-
20444376179
-
Fruitless splicing specifies male courtship behavior in Drosophila
-
Demir E., Dickson B.J. fruitless splicing specifies male courtship behavior in Drosophila. Cell 2005, 121:785-794.
-
(2005)
Cell
, vol.121
, pp. 785-794
-
-
Demir, E.1
Dickson, B.J.2
-
7
-
-
79955550445
-
A user's guide to the encyclopedia of DNA elements (ENCODE)
-
ENCODE Project Consortium
-
Myers R.M., Stamatoyannopoulos J., Snyder M., Dunham I., Hardison R.C., Bernstein B.E., Gingeras T.R., Kent W.J., Birney E., Wold B., Crawford G.E. A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol. 2011, 9:e1001046. ENCODE Project Consortium.
-
(2011)
PLoS Biol.
, vol.9
-
-
Myers, R.M.1
Stamatoyannopoulos, J.2
Snyder, M.3
Dunham, I.4
Hardison, R.C.5
Bernstein, B.E.6
Gingeras, T.R.7
Kent, W.J.8
Birney, E.9
Wold, B.10
Crawford, G.E.11
-
8
-
-
1842865939
-
Splicing regulation in Drosophila sex determination
-
Förch P., Valcárcel J. Splicing regulation in Drosophila sex determination. Prog. Mol. Subcell. Biol. 2003, 31:127-151.
-
(2003)
Prog. Mol. Subcell. Biol.
, vol.31
, pp. 127-151
-
-
Förch, P.1
Valcárcel, J.2
-
9
-
-
80052223272
-
An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming
-
in press
-
Gabut M., Samavarchi-Tehrani P., Wang X., Slobodeniuc V., O'Hanlon D., Sung H.-K., Alvarez M., Talukder S., Pan Q., et al. An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming. Cell 2011, in press.
-
(2011)
Cell
-
-
Gabut, M.1
Samavarchi-Tehrani, P.2
Wang, X.3
Slobodeniuc, V.4
O'Hanlon, D.5
Sung, H.-K.6
Alvarez, M.7
Talukder, S.8
Pan, Q.9
-
10
-
-
66749177966
-
Lfc and Tctex-1 regulate the genesis of neurons from cortical precursor cells
-
Gauthier-Fisher A., Lin D.C., Greeve M., Kaplan D.R., Rottapel R., Miller F.D. Lfc and Tctex-1 regulate the genesis of neurons from cortical precursor cells. Nat. Neurosci. 2009, 12:735-744.
-
(2009)
Nat. Neurosci.
, vol.12
, pp. 735-744
-
-
Gauthier-Fisher, A.1
Lin, D.C.2
Greeve, M.3
Kaplan, D.R.4
Rottapel, R.5
Miller, F.D.6
-
11
-
-
67149121885
-
REST and the RESTless: in stem cells and beyond
-
Gopalakrishnan V. REST and the RESTless: in stem cells and beyond. Future Neurol. 2009, 4:317-329.
-
(2009)
Future Neurol.
, vol.4
, pp. 317-329
-
-
Gopalakrishnan, V.1
-
12
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson D.S., Mortazavi A., Myers R.M., Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007, 316:1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
13
-
-
54949103985
-
REST regulates distinct transcriptional networks in embryonic and neural stem cells
-
Johnson R., Teh C.H., Kunarso G., Wong K.Y., Srinivasan G., Cooper M.L., Volta M., Chan S.S., Lipovich L., Pollard S.M., et al. REST regulates distinct transcriptional networks in embryonic and neural stem cells. PLoS Biol. 2008, 6:e256.
-
(2008)
PLoS Biol.
, vol.6
-
-
Johnson, R.1
Teh, C.H.2
Kunarso, G.3
Wong, K.Y.4
Srinivasan, G.5
Cooper, M.L.6
Volta, M.7
Chan, S.S.8
Lipovich, L.9
Pollard, S.M.10
-
14
-
-
65549095495
-
REST selectively represses a subset of RE1-containing neuronal genes in mouse embryonic stem cells
-
Jørgensen H.F., Terry A., Beretta C., Pereira C.F., Leleu M., Chen Z.F., Kelly C., Merkenschlager M., Fisher A.G. REST selectively represses a subset of RE1-containing neuronal genes in mouse embryonic stem cells. Development 2009, 136:715-721.
-
(2009)
Development
, vol.136
, pp. 715-721
-
-
Jørgensen, H.F.1
Terry, A.2
Beretta, C.3
Pereira, C.F.4
Leleu, M.5
Chen, Z.F.6
Kelly, C.7
Merkenschlager, M.8
Fisher, A.G.9
-
15
-
-
0036079158
-
The human genome browser at UCSC
-
Kent W.J., Sugnet C.W., Furey T.S., Roskin K.M., Pringle T.H., Zahler A.M., Haussler D. The human genome browser at UCSC. Genome Res. 2002, 12:996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
16
-
-
35548940665
-
Neuronal regulation of alternative pre-mRNA splicing
-
Li Q., Lee J.A., Black D.L. Neuronal regulation of alternative pre-mRNA splicing. Nat. Rev. Neurosci. 2007, 8:819-831.
-
(2007)
Nat. Rev. Neurosci.
, vol.8
, pp. 819-831
-
-
Li, Q.1
Lee, J.A.2
Black, D.L.3
-
17
-
-
77951821532
-
A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency
-
Mak A.B., Ni Z., Hewel J.A., Chen G.I., Zhong G., Karamboulas K., Blakely K., Smiley S., Marcon E., Roudeva D., et al. A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency. Mol. Cell. Proteomics 2010, 9:811-823.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 811-823
-
-
Mak, A.B.1
Ni, Z.2
Hewel, J.A.3
Chen, G.I.4
Zhong, G.5
Karamboulas, K.6
Blakely, K.7
Smiley, S.8
Marcon, E.9
Roudeva, D.10
-
18
-
-
77955448359
-
Smg1 is required for embryogenesis and regulates diverse genes via alternative splicing coupled to nonsense-mediated mRNA decay
-
McIlwain D.R., Pan Q., Reilly P.T., Elia A.J., McCracken S., Wakeham A.C., Itie-Youten A., Blencowe B.J., Mak T.W. Smg1 is required for embryogenesis and regulates diverse genes via alternative splicing coupled to nonsense-mediated mRNA decay. Proc. Natl. Acad. Sci. USA 2010, 107:12186-12191.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 12186-12191
-
-
McIlwain, D.R.1
Pan, Q.2
Reilly, P.T.3
Elia, A.J.4
McCracken, S.5
Wakeham, A.C.6
Itie-Youten, A.7
Blencowe, B.J.8
Mak, T.W.9
-
19
-
-
34250767817
-
Chromatin crosstalk in development and disease: lessons from REST
-
Ooi L., Wood I.C. Chromatin crosstalk in development and disease: lessons from REST. Nat. Rev. Genet. 2007, 8:544-554.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 544-554
-
-
Ooi, L.1
Wood, I.C.2
-
20
-
-
0032519868
-
Neuronal expression of zinc finger transcription factor REST/NRSF/XBR gene
-
Palm K., Belluardo N., Metsis M., Timmusk T. Neuronal expression of zinc finger transcription factor REST/NRSF/XBR gene. J. Neurosci. 1998, 18:1280-1296.
-
(1998)
J. Neurosci.
, vol.18
, pp. 1280-1296
-
-
Palm, K.1
Belluardo, N.2
Metsis, M.3
Timmusk, T.4
-
21
-
-
0032846641
-
Neuron-specific splicing of zinc finger transcription factor REST/NRSF/XBR is frequent in neuroblastomas and conserved in human, mouse and rat
-
Palm K., Metsis M., Timmusk T. Neuron-specific splicing of zinc finger transcription factor REST/NRSF/XBR is frequent in neuroblastomas and conserved in human, mouse and rat. Brain Res. Mol. Brain Res. 1999, 72:30-39.
-
(1999)
Brain Res. Mol. Brain Res.
, vol.72
, pp. 30-39
-
-
Palm, K.1
Metsis, M.2
Timmusk, T.3
-
22
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan Q., Shai O., Lee L.J., Frey B.J., Blencowe B.J. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet. 2008, 40:1413-1415.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
23
-
-
0034710902
-
Constitutive expression of the neuron-restrictive silencer factor (NRSF)/REST in differentiating neurons disrupts neuronal gene expression and causes axon pathfinding errors in vivo
-
Paquette A.J., Perez S.E., Anderson D.J. Constitutive expression of the neuron-restrictive silencer factor (NRSF)/REST in differentiating neurons disrupts neuronal gene expression and causes axon pathfinding errors in vivo. Proc. Natl. Acad. Sci. USA 2000, 97:12318-12323.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12318-12323
-
-
Paquette, A.J.1
Perez, S.E.2
Anderson, D.J.3
-
24
-
-
70350126990
-
Regulation of non-coding RNA networks in the nervous system-what's the REST of the story?
-
Qureshi I.A., Mehler M.F. Regulation of non-coding RNA networks in the nervous system-what's the REST of the story?. Neurosci. Lett. 2009, 466:73-80.
-
(2009)
Neurosci. Lett.
, vol.466
, pp. 73-80
-
-
Qureshi, I.A.1
Mehler, M.F.2
-
25
-
-
0028968802
-
The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes
-
Schoenherr C.J., Anderson D.J. The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes. Science 1995, 267:1360-1363.
-
(1995)
Science
, vol.267
, pp. 1360-1363
-
-
Schoenherr, C.J.1
Anderson, D.J.2
-
26
-
-
0035918268
-
Role of zinc finger domains of the transcription factor neuron-restrictive silencer factor/repressor element-1 silencing transcription factor in DNA binding and nuclear localization
-
Shimojo M., Lee J.-H., Hersh L.B. Role of zinc finger domains of the transcription factor neuron-restrictive silencer factor/repressor element-1 silencing transcription factor in DNA binding and nuclear localization. J. Biol. Chem. 2001, 276:13121-13126.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 13121-13126
-
-
Shimojo, M.1
Lee, J.-H.2
Hersh, L.B.3
-
28
-
-
0031026004
-
A single zinc finger motif in the silencing factor REST represses the neural-specific type II sodium channel promoter
-
Tapia-Ramírez J., Eggen B.J.L., Peral-Rubio M.J., Toledo-Aral J.J., Mandel G. A single zinc finger motif in the silencing factor REST represses the neural-specific type II sodium channel promoter. Proc. Natl. Acad. Sci. USA 1997, 94:1177-1182.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1177-1182
-
-
Tapia-Ramírez, J.1
Eggen, B.J.L.2
Peral-Rubio, M.J.3
Toledo-Aral, J.J.4
Mandel, G.5
-
29
-
-
0242497663
-
CLIP identifies Nova-regulated RNA networks in the brain
-
Ule J., Jensen K.B., Ruggiu M., Mele A., Ule A., Darnell R.B. CLIP identifies Nova-regulated RNA networks in the brain. Science 2003, 302:1212-1215.
-
(2003)
Science
, vol.302
, pp. 1212-1215
-
-
Ule, J.1
Jensen, K.B.2
Ruggiu, M.3
Mele, A.4
Ule, A.5
Darnell, R.B.6
-
30
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang E.T., Sandberg R., Luo S., Khrebtukova I., Zhang L., Mayr C., Kingsmore S.F., Schroth G.P., Burge C.B. Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456:470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
31
-
-
41149119961
-
SCFbeta-TRCP controls oncogenic transformation and neural differentiation through REST degradation
-
Westbrook T.F., Hu G., Ang X.L., Mulligan P., Pavlova N.N., Liang A., Leng Y., Maehr R., Shi Y., Harper J.W., Elledge S.J. SCFbeta-TRCP controls oncogenic transformation and neural differentiation through REST degradation. Nature 2008, 452:370-374.
-
(2008)
Nature
, vol.452
, pp. 370-374
-
-
Westbrook, T.F.1
Hu, G.2
Ang, X.L.3
Mulligan, P.4
Pavlova, N.N.5
Liang, A.6
Leng, Y.7
Maehr, R.8
Shi, Y.9
Harper, J.W.10
Elledge, S.J.11
|