메뉴 건너뛰기




Volumn 98, Issue 3, 2011, Pages 182-188

Effects of genome architecture and epigenetic factors on susceptibility of promoter CpG islands to aberrant DNA methylation induction

Author keywords

Cancer; DNA methylation; Epigenetics; LINE; SINE; Target gene specificity

Indexed keywords

DNA; RNA POLYMERASE II;

EID: 80052156601     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2011.06.003     Document Type: Article
Times cited : (15)

References (33)
  • 1
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A. DNA methylation patterns and epigenetic memory. Genes Dev. 2002, 16:6-21.
    • (2002) Genes Dev. , vol.16 , pp. 6-21
    • Bird, A.1
  • 2
    • 34347358721 scopus 로고    scopus 로고
    • Role of histone modification in chromatin dynamics
    • Ito T. Role of histone modification in chromatin dynamics. J. Biochem. 2007, 141:609-614.
    • (2007) J. Biochem. , vol.141 , pp. 609-614
    • Ito, T.1
  • 3
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T. Chromatin modifications and their function. Cell 2007, 128:693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 4
    • 0030459140 scopus 로고    scopus 로고
    • The role of DNA methylation in cancer genetic and epigenetics
    • Laird P.W., Jaenisch R. The role of DNA methylation in cancer genetic and epigenetics. Annu. Rev. Genet. 1996, 30:441-464.
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 441-464
    • Laird, P.W.1    Jaenisch, R.2
  • 5
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones P.A., Baylin S.B. The epigenomics of cancer. Cell 2007, 128:683-692.
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 6
    • 27744495771 scopus 로고    scopus 로고
    • Epigenetic silencing of the MGMT gene in cancer
    • Soejima H., Zhao W., Mukai T. Epigenetic silencing of the MGMT gene in cancer. Biochem. Cell Biol. 2005, 83:429-437.
    • (2005) Biochem. Cell Biol. , vol.83 , pp. 429-437
    • Soejima, H.1    Zhao, W.2    Mukai, T.3
  • 7
    • 14644396228 scopus 로고    scopus 로고
    • Detection and interpretation of altered methylation patterns in cancer cells
    • Ushijima T. Detection and interpretation of altered methylation patterns in cancer cells. Nat. Rev. Cancer 2005, 5:223-231.
    • (2005) Nat. Rev. Cancer , vol.5 , pp. 223-231
    • Ushijima, T.1
  • 9
    • 58149468085 scopus 로고    scopus 로고
    • The presence of a methylation fingerprint of Helicobacter pylori infection in human gastric mucosae
    • Nakajima T., Yamashita S., Maekita T., Niwa T., Nakazawa K., Ushijima T. The presence of a methylation fingerprint of Helicobacter pylori infection in human gastric mucosae. Int. J. Cancer 2009, 124:905-910.
    • (2009) Int. J. Cancer , vol.124 , pp. 905-910
    • Nakajima, T.1    Yamashita, S.2    Maekita, T.3    Niwa, T.4    Nakazawa, K.5    Ushijima, T.6
  • 10
    • 68149163598 scopus 로고    scopus 로고
    • The presence of aberrant DNA methylation in noncancerous esophageal mucosae in association with smoking history: a target for risk diagnosis and prevention of esophageal cancers
    • Oka D., Yamashita S., Tomioka T., Nakanishi Y., Kato H., Kaminishi M., Ushijima T. The presence of aberrant DNA methylation in noncancerous esophageal mucosae in association with smoking history: a target for risk diagnosis and prevention of esophageal cancers. Cancer 2009, 115:3412-3426.
    • (2009) Cancer , vol.115 , pp. 3412-3426
    • Oka, D.1    Yamashita, S.2    Tomioka, T.3    Nakanishi, Y.4    Kato, H.5    Kaminishi, M.6    Ushijima, T.7
  • 11
    • 70350069495 scopus 로고    scopus 로고
    • The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands
    • Takeshima H., Yamashita S., Shimazu T., Niwa T., Ushijima T. The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands. Genome Res. 2009, 19:1974-1982.
    • (2009) Genome Res. , vol.19 , pp. 1974-1982
    • Takeshima, H.1    Yamashita, S.2    Shimazu, T.3    Niwa, T.4    Ushijima, T.5
  • 12
    • 2442654138 scopus 로고    scopus 로고
    • Promoter-dependent mechanism leading to selective hypomethylation within the 5′ region of gene MAGE-A1 in tumor cells
    • De Smet C., Loriot A., Boon T. Promoter-dependent mechanism leading to selective hypomethylation within the 5′ region of gene MAGE-A1 in tumor cells. Mol. Cell. Biol. 2004, 24:4781-4790.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 4781-4790
    • De Smet, C.1    Loriot, A.2    Boon, T.3
  • 13
    • 33745728166 scopus 로고    scopus 로고
    • Silencing of Peroxiredoxin 2 and aberrant methylation of 33 CpG islands in putative promoter regions in human malignant melanomas
    • Furuta J., Nobeyama Y., Umebayashi Y., Otsuka F., Kikuchi K., Ushijima T. Silencing of Peroxiredoxin 2 and aberrant methylation of 33 CpG islands in putative promoter regions in human malignant melanomas. Cancer Res. 2006, 66:6080-6086.
    • (2006) Cancer Res. , vol.66 , pp. 6080-6086
    • Furuta, J.1    Nobeyama, Y.2    Umebayashi, Y.3    Otsuka, F.4    Kikuchi, K.5    Ushijima, T.6
  • 15
    • 85047695221 scopus 로고    scopus 로고
    • Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells
    • Song J.Z., Stirzaker C., Harrison J., Melki J.R., Clark S.J. Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells. Oncogene 2002, 21:1048-1061.
    • (2002) Oncogene , vol.21 , pp. 1048-1061
    • Song, J.Z.1    Stirzaker, C.2    Harrison, J.3    Melki, J.R.4    Clark, S.J.5
  • 20
    • 58249112139 scopus 로고    scopus 로고
    • A multifactorial signature of DNA sequence and polycomb binding predicts aberrant CpG island methylation
    • McCabe M.T., Lee E.K., Vertino P.M. A multifactorial signature of DNA sequence and polycomb binding predicts aberrant CpG island methylation. Cancer Res. 2009, 69:282-291.
    • (2009) Cancer Res. , vol.69 , pp. 282-291
    • McCabe, M.T.1    Lee, E.K.2    Vertino, P.M.3
  • 21
    • 77953976398 scopus 로고    scopus 로고
    • Methylation destiny: Moira takes account of histones and RNA polymerase II
    • Takeshima H., Ushijima T. Methylation destiny: Moira takes account of histones and RNA polymerase II. Epigenetics 2010, 5:89-95.
    • (2010) Epigenetics , vol.5 , pp. 89-95
    • Takeshima, H.1    Ushijima, T.2
  • 25
    • 41649088383 scopus 로고    scopus 로고
    • Regulation of mammalian gene expression by retroelements and non-coding tandem repeats
    • Tomilin N.V. Regulation of mammalian gene expression by retroelements and non-coding tandem repeats. Bioessays 2008, 30:338-348.
    • (2008) Bioessays , vol.30 , pp. 338-348
    • Tomilin, N.V.1
  • 26
    • 33644507479 scopus 로고    scopus 로고
    • Transcription factor YY1: structure, function, and therapeutic implications in cancer biology
    • Gordon S., Akopyan G., Garban H., Bonavida B. Transcription factor YY1: structure, function, and therapeutic implications in cancer biology. Oncogene 2006, 25:1125-1142.
    • (2006) Oncogene , vol.25 , pp. 1125-1142
    • Gordon, S.1    Akopyan, G.2    Garban, H.3    Bonavida, B.4
  • 27
    • 0032819331 scopus 로고    scopus 로고
    • Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key?
    • Thomas M.J., Seto E. Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key?. Gene 1999, 236:197-208.
    • (1999) Gene , vol.236 , pp. 197-208
    • Thomas, M.J.1    Seto, E.2
  • 28
    • 20144383392 scopus 로고    scopus 로고
    • Functional epigenomics identifies genes frequently silenced in prostate cancer
    • Lodygin D., Epanchintsev A., Menssen A., Diebold J., Hermeking H. Functional epigenomics identifies genes frequently silenced in prostate cancer. Cancer Res. 2005, 65:4218-4227.
    • (2005) Cancer Res. , vol.65 , pp. 4218-4227
    • Lodygin, D.1    Epanchintsev, A.2    Menssen, A.3    Diebold, J.4    Hermeking, H.5
  • 30
    • 32944481037 scopus 로고    scopus 로고
    • Chemical genomic screening for methylation-silenced genes in gastric cancer cell lines using 5-aza-2′-deoxycytidine treatment and oligonucleotide microarray
    • Yamashita S., Tsujino Y., Moriguchi K., Tatematsu M., Ushijima T. Chemical genomic screening for methylation-silenced genes in gastric cancer cell lines using 5-aza-2′-deoxycytidine treatment and oligonucleotide microarray. Cancer Sci. 2006, 97:64-71.
    • (2006) Cancer Sci. , vol.97 , pp. 64-71
    • Yamashita, S.1    Tsujino, Y.2    Moriguchi, K.3    Tatematsu, M.4    Ushijima, T.5
  • 31
    • 70350710509 scopus 로고    scopus 로고
    • Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis
    • Yamashita S., Hosoya K., Gyobu K., Takeshima H., Ushijima T. Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis. DNA Res. 2009, 16:275-286.
    • (2009) DNA Res. , vol.16 , pp. 275-286
    • Yamashita, S.1    Hosoya, K.2    Gyobu, K.3    Takeshima, H.4    Ushijima, T.5
  • 33
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.