메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; AZTREONAM; CARBENICILLIN; CEFMINOX; CEFOTAXIME; CEFOXITIN; CEFTAZIDIME; CEFTRIAXONE; CHITINASE; CHLORAMPHENICOL; COLISTIN; GENTAMICIN; IMIPENEM; KANAMYCIN; MEROPENEM; OFLOXACIN; RIFAMPICIN; ROXITHROMYCIN; SPECTINOMYCIN; TETRACYCLINE; TOBRAMYCIN; TRANSCRIPTOME;

EID: 80052139487     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-438     Document Type: Article
Times cited : (72)

References (76)
  • 1
    • 15044357394 scopus 로고    scopus 로고
    • Isolation and characterization of a new fluorescent Pseudomonas strain that produces both phenazine 1-carboxylic acid and pyoluteorin
    • Hu H, Xu Y, Chen F, Zhang X, Hur BK. Isolation and characterization of a new fluorescent Pseudomonas strain that produces both phenazine 1-carboxylic acid and pyoluteorin. J Microbiol Biotechnol 2005, 15:86-90.
    • (2005) J Microbiol Biotechnol , vol.15 , pp. 86-90
    • Hu, H.1    Xu, Y.2    Chen, F.3    Zhang, X.4    Hur, B.K.5
  • 2
    • 3242784128 scopus 로고    scopus 로고
    • Phenazine-1-carboxylic acid is negatively regulated and pyoluteorin positively regulated by gacA in Pseudomonas sp. M18
    • 10.1111/j.1574-6968.2004.tb09676.x, 15268936
    • Ge Y, Huang X, Wang S, Zhang X, Xu Y. Phenazine-1-carboxylic acid is negatively regulated and pyoluteorin positively regulated by gacA in Pseudomonas sp. M18. FEMS Microbiol Lett 2004, 237:41-47. 10.1111/j.1574-6968.2004.tb09676.x, 15268936.
    • (2004) FEMS Microbiol Lett , vol.237 , pp. 41-47
    • Ge, Y.1    Huang, X.2    Wang, S.3    Zhang, X.4    Xu, Y.5
  • 3
    • 33846283840 scopus 로고    scopus 로고
    • Autoinduction of RpoS biosynthesis in the biocontrol strain Pseudomonas sp. M18
    • 10.1007/s00284-006-0072-z, 17200803
    • Ge Y, Pei D, Feng P, Huang X, Xu Y. Autoinduction of RpoS biosynthesis in the biocontrol strain Pseudomonas sp. M18. Curr Microbiol 2007, 54:97-101. 10.1007/s00284-006-0072-z, 17200803.
    • (2007) Curr Microbiol , vol.54 , pp. 97-101
    • Ge, Y.1    Pei, D.2    Feng, P.3    Huang, X.4    Xu, Y.5
  • 4
    • 40149104086 scopus 로고    scopus 로고
    • QscR acts as an intermediate in gacA-dependent regulation of PCA biosynthesis in Pseudomonas sp. M18
    • 10.1007/s00284-007-9087-3, 18176822
    • Wang Y, Huang X, Hu H, Zhang X, Xu Y. QscR acts as an intermediate in gacA-dependent regulation of PCA biosynthesis in Pseudomonas sp. M18. Curr Microbiol 2008, 56:339-345. 10.1007/s00284-007-9087-3, 18176822.
    • (2008) Curr Microbiol , vol.56 , pp. 339-345
    • Wang, Y.1    Huang, X.2    Hu, H.3    Zhang, X.4    Xu, Y.5
  • 5
    • 33846321899 scopus 로고    scopus 로고
    • An rhl-like quorum-sensing system negatively regulates pyoluteorin production in Pseudomonas sp. M18
    • 10.1099/mic.0.29211-0, 17185531
    • Yan A, Huang X, Liu H, Dong D, Zhang D, Zhang X, Xu Y. An rhl-like quorum-sensing system negatively regulates pyoluteorin production in Pseudomonas sp. M18. Microbiology 2007, 153:16-28. 10.1099/mic.0.29211-0, 17185531.
    • (2007) Microbiology , vol.153 , pp. 16-28
    • Yan, A.1    Huang, X.2    Liu, H.3    Dong, D.4    Zhang, D.5    Zhang, X.6    Xu, Y.7
  • 6
    • 38849090704 scopus 로고    scopus 로고
    • Las-like quorum-sensing system negatively regulates both pyoluteorin and phenazine-1-carboxylic acid production in Pseudomonas sp. M18
    • 10.1007/s11427-008-0026-8, 18239896
    • Chen Y, Wang X, Huang X, Zhang X, Xu Y. Las-like quorum-sensing system negatively regulates both pyoluteorin and phenazine-1-carboxylic acid production in Pseudomonas sp. M18. Sci China C Life Sci 2008, 51:174-181. 10.1007/s11427-008-0026-8, 18239896.
    • (2008) Sci China C Life Sci , vol.51 , pp. 174-181
    • Chen, Y.1    Wang, X.2    Huang, X.3    Zhang, X.4    Xu, Y.5
  • 7
    • 27944483264 scopus 로고    scopus 로고
    • Differential regulation of rsmA gene on biosynthesis of pyoluteorin and phenazine-1-carboxylic acid in Pseudomonas sp. M18
    • Zhang X, Wang S, Geng H, Ge Y, Huang X, Hu H, Xu Y. Differential regulation of rsmA gene on biosynthesis of pyoluteorin and phenazine-1-carboxylic acid in Pseudomonas sp. M18. World J Microbiol Biotechnol 2005, 21:883-889.
    • (2005) World J Microbiol Biotechnol , vol.21 , pp. 883-889
    • Zhang, X.1    Wang, S.2    Geng, H.3    Ge, Y.4    Huang, X.5    Hu, H.6    Xu, Y.7
  • 8
    • 0022602903 scopus 로고
    • Characterization of an antibiotic produced by a strain of Pseudomonas fluorescens inhibitory to Gaeumannomyces graminis var. tritici and Pythium spp
    • 180419, 3087284
    • Gurusiddaiah S, Weller DM, Sarkar A, Cook RJ. Characterization of an antibiotic produced by a strain of Pseudomonas fluorescens inhibitory to Gaeumannomyces graminis var. tritici and Pythium spp. Antimicrob Agents Chemother 1986, 29:488-495. 180419, 3087284.
    • (1986) Antimicrob Agents Chemother , vol.29 , pp. 488-495
    • Gurusiddaiah, S.1    Weller, D.M.2    Sarkar, A.3    Cook, R.J.4
  • 9
    • 0000625019 scopus 로고
    • Suppression of Pythium ultimum-induced damping-off of cotton seedlings by Pseudomonas fluorescens and its antibiotic, pyoluteorin
    • Howell CR, Stipanovic RD. Suppression of Pythium ultimum-induced damping-off of cotton seedlings by Pseudomonas fluorescens and its antibiotic, pyoluteorin. Phytopathology 1980, 70:712-715.
    • (1980) Phytopathology , vol.70 , pp. 712-715
    • Howell, C.R.1    Stipanovic, R.D.2
  • 11
    • 70349901073 scopus 로고    scopus 로고
    • Temperature-dependent expression of phzM and its regulatory genes lasI and ptsP in rhizosphere isolate Pseudomonas sp. strain M18
    • 10.1128/AEM.01148-09, 2765144, 19717631
    • Huang J, Xu Y, Zhang H, Li Y, Huang X, Ren B, Zhang X. Temperature-dependent expression of phzM and its regulatory genes lasI and ptsP in rhizosphere isolate Pseudomonas sp. strain M18. Appl Environ Microbiol 2009, 75:6568-6580. 10.1128/AEM.01148-09, 2765144, 19717631.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6568-6580
    • Huang, J.1    Xu, Y.2    Zhang, H.3    Li, Y.4    Huang, X.5    Ren, B.6    Zhang, X.7
  • 12
    • 33747078286 scopus 로고    scopus 로고
    • Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation
    • 10.1146/annurev.phyto.44.013106.145710, 16719720
    • Mavrodi DV, Blankenfeldt W, Thomashow LS. Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation. Annu Rev Phytopathol 2006, 44:417-445. 10.1146/annurev.phyto.44.013106.145710, 16719720.
    • (2006) Annu Rev Phytopathol , vol.44 , pp. 417-445
    • Mavrodi, D.V.1    Blankenfeldt, W.2    Thomashow, L.S.3
  • 13
    • 58149389286 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa-Candida albicans interactions: localization and fungal toxicity of a phenazine derivative
    • 10.1128/AEM.01037-08, 2620721, 19011064
    • Gibson J, Sood A, Hogan DA. Pseudomonas aeruginosa-Candida albicans interactions: localization and fungal toxicity of a phenazine derivative. Appl Environ Microbiol 2009, 75:504-513. 10.1128/AEM.01037-08, 2620721, 19011064.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 504-513
    • Gibson, J.1    Sood, A.2    Hogan, D.A.3
  • 15
    • 71449106995 scopus 로고    scopus 로고
    • The distinct quorum sensing hierarchy of las and rhl in Pseudomonas sp. M18
    • 10.1007/s00284-009-9483-y, 19727948
    • Lu J, Huang X, Zhang M, Li S, Jiang H, Xu Y. The distinct quorum sensing hierarchy of las and rhl in Pseudomonas sp. M18. Curr Microbiol 2009, 59:621-627. 10.1007/s00284-009-9483-y, 19727948.
    • (2009) Curr Microbiol , vol.59 , pp. 621-627
    • Lu, J.1    Huang, X.2    Zhang, M.3    Li, S.4    Jiang, H.5    Xu, Y.6
  • 16
    • 0029863571 scopus 로고    scopus 로고
    • Involvement of pyochelin and pyoverdin in suppression of Pythium-Induced damping-off of tomato by Pseudomonas aeruginosa 7NSK2
    • 1388800, 16535275
    • Buysens S, Heungens K, Poppe J, Hofte M. Involvement of pyochelin and pyoverdin in suppression of Pythium-Induced damping-off of tomato by Pseudomonas aeruginosa 7NSK2. Appl Environ Microbiol 1996, 62:865-871. 1388800, 16535275.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 865-871
    • Buysens, S.1    Heungens, K.2    Poppe, J.3    Hofte, M.4
  • 17
    • 0038693573 scopus 로고    scopus 로고
    • Effect of genotype and root colonization in biological control of fusarium wilts in pigeonpea and chickpea by Pseudomonas aeruginosa PNA1
    • 10.1139/w03-011, 12718396
    • Anjaiah V, Cornelis P, Koedam N. Effect of genotype and root colonization in biological control of fusarium wilts in pigeonpea and chickpea by Pseudomonas aeruginosa PNA1. Can J Microbiol 2003, 49:85-91. 10.1139/w03-011, 12718396.
    • (2003) Can J Microbiol , vol.49 , pp. 85-91
    • Anjaiah, V.1    Cornelis, P.2    Koedam, N.3
  • 18
    • 0037712974 scopus 로고    scopus 로고
    • Characterization of a new Pseudomonas aeruginosa strain NJ-15 as a potential biocontrol agent
    • 10.1007/s00284-002-3857-8, 12732958
    • Bano N, Musarrat J. Characterization of a new Pseudomonas aeruginosa strain NJ-15 as a potential biocontrol agent. Curr Microbiol 2003, 46:324-328. 10.1007/s00284-002-3857-8, 12732958.
    • (2003) Curr Microbiol , vol.46 , pp. 324-328
    • Bano, N.1    Musarrat, J.2
  • 19
    • 12344292435 scopus 로고    scopus 로고
    • Characterization of antifungal metabolite produced by a new strain Pseudomonas aeruginosa PUPa3 that exhibits broad-spectrum antifungal activity and biofertilizing traits
    • 10.1111/j.1365-2672.2004.02435.x, 15610427
    • Kumar RS, Ayyadurai N, Pandiaraja P, Reddy AV, Venkateswarlu Y, Prakash O, Sakthivel N. Characterization of antifungal metabolite produced by a new strain Pseudomonas aeruginosa PUPa3 that exhibits broad-spectrum antifungal activity and biofertilizing traits. J Appl Microbiol 2005, 98:145-154. 10.1111/j.1365-2672.2004.02435.x, 15610427.
    • (2005) J Appl Microbiol , vol.98 , pp. 145-154
    • Kumar, R.S.1    Ayyadurai, N.2    Pandiaraja, P.3    Reddy, A.V.4    Venkateswarlu, Y.5    Prakash, O.6    Sakthivel, N.7
  • 20
    • 76049085500 scopus 로고    scopus 로고
    • Enhancement of phenazine-1-carboxylic acid production using batch and fed-batch culture of gacA inactivated Pseudomonas sp. M18G
    • 10.1016/j.biortech.2009.12.120, 20097558
    • Li Y, Jiang H, Du X, Huang X, Zhang X, Xu Y. Enhancement of phenazine-1-carboxylic acid production using batch and fed-batch culture of gacA inactivated Pseudomonas sp. M18G. Bioresour Technol 2010, 101:3649-3656. 10.1016/j.biortech.2009.12.120, 20097558.
    • (2010) Bioresour Technol , vol.101 , pp. 3649-3656
    • Li, Y.1    Jiang, H.2    Du, X.3    Huang, X.4    Zhang, X.5    Xu, Y.6
  • 21
    • 76749101843 scopus 로고    scopus 로고
    • Medium optimization for phenazine-1-carboxylic acid production by a gacA qscR double mutant of Pseudomonas sp. M18 using response surface methodology
    • 10.1016/j.biortech.2009.12.143, 20116999
    • Su J, Zhou Q, Zhang H, Li Y, Huang X, Xu Y. Medium optimization for phenazine-1-carboxylic acid production by a gacA qscR double mutant of Pseudomonas sp. M18 using response surface methodology. Bioresour Technol 2010, 101:4089-4095. 10.1016/j.biortech.2009.12.143, 20116999.
    • (2010) Bioresour Technol , vol.101 , pp. 4089-4095
    • Su, J.1    Zhou, Q.2    Zhang, H.3    Li, Y.4    Huang, X.5    Xu, Y.6
  • 22
    • 77952835458 scopus 로고    scopus 로고
    • Optimization of phenazine-1-carboxylic acid production by a gacA/qscR-inactivated Pseudomonas sp. M18GQ harboring pME6032Phz using response surface methodology
    • 10.1007/s00253-010-2464-z, 20155354
    • Zhou Q, Su J, Jiang H, Huang X, Xu Y. Optimization of phenazine-1-carboxylic acid production by a gacA/qscR-inactivated Pseudomonas sp. M18GQ harboring pME6032Phz using response surface methodology. Appl Microbiol Biotechnol 2010, 86:1761-1773. 10.1007/s00253-010-2464-z, 20155354.
    • (2010) Appl Microbiol Biotechnol , vol.86 , pp. 1761-1773
    • Zhou, Q.1    Su, J.2    Jiang, H.3    Huang, X.4    Xu, Y.5
  • 25
    • 77749320916 scopus 로고    scopus 로고
    • Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7
    • 10.1371/journal.pone.0008842, 2809737, 20107499
    • Roy PH, Tetu SG, Larouche A, Elbourne L, Tremblay S, Ren Q, Dodson R, Harkins D, Shay R, Watkins K, et al. Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7. PLoS ONE 2010, 5:e8842. 10.1371/journal.pone.0008842, 2809737, 20107499.
    • (2010) PLoS ONE , vol.5
    • Roy, P.H.1    Tetu, S.G.2    Larouche, A.3    Elbourne, L.4    Tremblay, S.5    Ren, Q.6    Dodson, R.7    Harkins, D.8    Shay, R.9    Watkins, K.10
  • 26
    • 0038153119 scopus 로고    scopus 로고
    • Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa
    • 10.1073/pnas.0832438100, 166255, 12815109
    • Wolfgang MC, Kulasekara BR, Liang X, Boyd D, Wu K, Yang Q, Miyada CG, Lory S. Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa. Proc Natl Acad Sci USA 2003, 100:8484-8489. 10.1073/pnas.0832438100, 166255, 12815109.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8484-8489
    • Wolfgang, M.C.1    Kulasekara, B.R.2    Liang, X.3    Boyd, D.4    Wu, K.5    Yang, Q.6    Miyada, C.G.7    Lory, S.8
  • 28
    • 77954265673 scopus 로고    scopus 로고
    • MGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes
    • 2896100, 20435682
    • Shao Y, He X, Harrison EM, Tai C, Ou HY, Rajakumar K, Deng Z. mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes. Nucleic Acids Res 2010, 38(Suppl):W194-200. 2896100, 20435682.
    • (2010) Nucleic Acids Res , vol.38 , Issue.SUPPL.
    • Shao, Y.1    He, X.2    Harrison, E.M.3    Tai, C.4    Ou, H.Y.5    Rajakumar, K.6    Deng, Z.7
  • 29
    • 0036606576 scopus 로고    scopus 로고
    • Fast algorithms for large-scale genome alignment and comparison
    • 10.1093/nar/30.11.2478, 117189, 12034836
    • Delcher AL, Phillippy A, Carlton J, Salzberg SL. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res 2002, 30:2478-2483. 10.1093/nar/30.11.2478, 117189, 12034836.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2478-2483
    • Delcher, A.L.1    Phillippy, A.2    Carlton, J.3    Salzberg, S.L.4
  • 31
    • 58149197594 scopus 로고    scopus 로고
    • Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes
    • 10.1093/nar/gkn861, 2686508, 18978025
    • Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, Hancock RE, Brinkman FS. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Nucleic Acids Res 2009, 37:D483-488. 10.1093/nar/gkn861, 2686508, 18978025.
    • (2009) Nucleic Acids Res , vol.37
    • Winsor, G.L.1    Van Rossum, T.2    Lo, R.3    Khaira, B.4    Whiteside, M.D.5    Hancock, R.E.6    Brinkman, F.S.7
  • 33
    • 10744225048 scopus 로고    scopus 로고
    • The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes
    • 10.1073/pnas.0304622101, 356984, 14983043
    • He J, Baldini RL, Deziel E, Saucier M, Zhang Q, Liberati NT, Lee D, Urbach J, Goodman HM, Rahme LG. The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes. Proc Natl Acad Sci USA 2004, 101:2530-2535. 10.1073/pnas.0304622101, 356984, 14983043.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 2530-2535
    • He, J.1    Baldini, R.L.2    Deziel, E.3    Saucier, M.4    Zhang, Q.5    Liberati, N.T.6    Lee, D.7    Urbach, J.8    Goodman, H.M.9    Rahme, L.G.10
  • 34
    • 77950217695 scopus 로고    scopus 로고
    • Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14
    • 10.1128/IAI.00621-09, 2849418, 20123716
    • Harrison EM, Carter ME, Luck S, Ou HY, He X, Deng Z, O'Callaghan C, Kadioglu A, Rajakumar K. Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14. Infect Immun 2010, 78:1437-1446. 10.1128/IAI.00621-09, 2849418, 20123716.
    • (2010) Infect Immun , vol.78 , pp. 1437-1446
    • Harrison, E.M.1    Carter, M.E.2    Luck, S.3    Ou, H.Y.4    He, X.5    Deng, Z.6    O'Callaghan, C.7    Kadioglu, A.8    Rajakumar, K.9
  • 35
    • 55749102738 scopus 로고    scopus 로고
    • Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals
    • 10.1128/JB.00785-08, 2580712, 18757543
    • Battle SE, Meyer F, Rello J, Kung VL, Hauser AR. Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals. J Bacteriol 2008, 190:7130-7140. 10.1128/JB.00785-08, 2580712, 18757543.
    • (2008) J Bacteriol , vol.190 , pp. 7130-7140
    • Battle, S.E.1    Meyer, F.2    Rello, J.3    Kung, V.L.4    Hauser, A.R.5
  • 36
    • 0035883519 scopus 로고    scopus 로고
    • Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
    • 10.1093/nar/29.18.3742, 55917, 11557807
    • Kobayashi I. Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res 2001, 29:3742-3756. 10.1093/nar/29.18.3742, 55917, 11557807.
    • (2001) Nucleic Acids Res , vol.29 , pp. 3742-3756
    • Kobayashi, I.1
  • 37
    • 33745133724 scopus 로고    scopus 로고
    • Identification and characterization of a putative ABC transporter PltHIJKN required for pyoluteorin production in Pseudomonas sp. M18
    • 10.1016/j.gene.2006.02.009, 16581203
    • Huang X, Yan A, Zhang X, Xu Y. Identification and characterization of a putative ABC transporter PltHIJKN required for pyoluteorin production in Pseudomonas sp. M18. Gene 2006, 376:68-78. 10.1016/j.gene.2006.02.009, 16581203.
    • (2006) Gene , vol.376 , pp. 68-78
    • Huang, X.1    Yan, A.2    Zhang, X.3    Xu, Y.4
  • 38
    • 1842524056 scopus 로고    scopus 로고
    • Identification and characterization of pltZ, a gene involved in the repression of pyoluteorin biosynthesis in Pseudomonas sp. M18
    • 10.1016/S0378-1097(04)00074-6, 15033239
    • Huang X, Zhu D, Ge Y, Hu H, Zhang X, Xu Y. Identification and characterization of pltZ, a gene involved in the repression of pyoluteorin biosynthesis in Pseudomonas sp. M18. FEMS Microbiol Lett 2004, 232:197-202. 10.1016/S0378-1097(04)00074-6, 15033239.
    • (2004) FEMS Microbiol Lett , vol.232 , pp. 197-202
    • Huang, X.1    Zhu, D.2    Ge, Y.3    Hu, H.4    Zhang, X.5    Xu, Y.6
  • 39
    • 0032936731 scopus 로고    scopus 로고
    • Characterization of the pyoluteorin biosynthetic gene cluster of Pseudomonas fluorescens Pf-5
    • 93630, 10094695
    • Nowak-Thompson B, Chaney N, Wing JS, Gould SJ, Loper JE. Characterization of the pyoluteorin biosynthetic gene cluster of Pseudomonas fluorescens Pf-5. J Bacteriol 1999, 181:2166-2174. 93630, 10094695.
    • (1999) J Bacteriol , vol.181 , pp. 2166-2174
    • Nowak-Thompson, B.1    Chaney, N.2    Wing, J.S.3    Gould, S.J.4    Loper, J.E.5
  • 40
    • 0035979193 scopus 로고    scopus 로고
    • A genomic island in Pseudomonas aeruginosa carries the determinants of flagellin glycosylation
    • 10.1073/pnas.161249198, 55422, 11481492
    • Arora SK, Bangera M, Lory S, Ramphal R. A genomic island in Pseudomonas aeruginosa carries the determinants of flagellin glycosylation. Proc Natl Acad Sci USA 2001, 98:9342-9347. 10.1073/pnas.161249198, 55422, 11481492.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 9342-9347
    • Arora, S.K.1    Bangera, M.2    Lory, S.3    Ramphal, R.4
  • 41
    • 0034572736 scopus 로고    scopus 로고
    • Cytochromes P450: a success story
    • 138896, 11178272, REVIEWS3003
    • Werck-Reichhart D, Feyereisen R. Cytochromes P450: a success story. Genome Biol 2000, 1:REVIEWS3003. 138896, 11178272.
    • (2000) Genome Biol , vol.1
    • Werck-Reichhart, D.1    Feyereisen, R.2
  • 42
    • 33947230782 scopus 로고    scopus 로고
    • Bacterial chitinases: properties and potential
    • 10.1080/07388550601168223, 17364687
    • Bhattacharya D, Nagpure A, Gupta RK. Bacterial chitinases: properties and potential. Crit Rev Biotechnol 2007, 27:21-28. 10.1080/07388550601168223, 17364687.
    • (2007) Crit Rev Biotechnol , vol.27 , pp. 21-28
    • Bhattacharya, D.1    Nagpure, A.2    Gupta, R.K.3
  • 43
    • 0028306109 scopus 로고
    • Crystal structure of CspA, the major cold shock protein of Escherichia coli
    • 10.1073/pnas.91.11.5119, 43943, 8197194
    • Schindelin H, Jiang W, Inouye M, Heinemann U. Crystal structure of CspA, the major cold shock protein of Escherichia coli. Proc Natl Acad Sci USA 1994, 91:5119-5123. 10.1073/pnas.91.11.5119, 43943, 8197194.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 5119-5123
    • Schindelin, H.1    Jiang, W.2    Inouye, M.3    Heinemann, U.4
  • 45
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
    • 10.1093/nar/gkm360, 1933234, 17537822
    • Grissa I, Vergnaud G, Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 2007, 35:W52-57. 10.1093/nar/gkm360, 1933234, 17537822.
    • (2007) Nucleic Acids Res , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 47
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • 10.1126/science.1165771, 2695655, 19095942
    • Marraffini LA, Sontheimer EJ. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 2008, 322:1843-1845. 10.1126/science.1165771, 2695655, 19095942.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 48
    • 0027076429 scopus 로고
    • Iron assimilation and storage in prokaryotes
    • Briat JF. Iron assimilation and storage in prokaryotes. J Gen Microbiol 1992, 138:2475-2483.
    • (1992) J Gen Microbiol , vol.138 , pp. 2475-2483
    • Briat, J.F.1
  • 49
    • 79955761635 scopus 로고    scopus 로고
    • Regulatory feedback loop of two phz gene clusters through 5'-untranslated regions in Pseudomonas sp. M18
    • 10.1371/journal.pone.0019413, 3084852, 21559370
    • Li Y, Du X, Lu ZJ, Wu D, Zhao Y, Ren B, Huang J, Huang X, Xu Y. Regulatory feedback loop of two phz gene clusters through 5'-untranslated regions in Pseudomonas sp. M18. PLoS ONE 2011, 6:e19413. 10.1371/journal.pone.0019413, 3084852, 21559370.
    • (2011) PLoS ONE , vol.6
    • Li, Y.1    Du, X.2    Lu, Z.J.3    Wu, D.4    Zhao, Y.5    Ren, B.6    Huang, J.7    Huang, X.8    Xu, Y.9
  • 51
    • 38549107537 scopus 로고    scopus 로고
    • VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics
    • 2238871, 17984080
    • Yang J, Chen L, Sun L, Yu J, Jin Q. VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Res 2008, 36:D539-542. 2238871, 17984080.
    • (2008) Nucleic Acids Res , vol.36
    • Yang, J.1    Chen, L.2    Sun, L.3    Yu, J.4    Jin, Q.5
  • 52
    • 0030033830 scopus 로고    scopus 로고
    • Pyoverdin is essential for virulence of Pseudomonas aeruginosa
    • 173795, 8550201
    • Meyer JM, Neely A, Stintzi A, Georges C, Holder IA. Pyoverdin is essential for virulence of Pseudomonas aeruginosa. Infect Immun 1996, 64:518-523. 173795, 8550201.
    • (1996) Infect Immun , vol.64 , pp. 518-523
    • Meyer, J.M.1    Neely, A.2    Stintzi, A.3    Georges, C.4    Holder, I.A.5
  • 53
    • 34347404255 scopus 로고    scopus 로고
    • Threonine phosphorylation post-translationally regulates protein secretion in Pseudomonas aeruginosa
    • 10.1038/ncb1605, 17558395
    • Mougous JD, Gifford CA, Ramsdell TL, Mekalanos JJ. Threonine phosphorylation post-translationally regulates protein secretion in Pseudomonas aeruginosa. Nat Cell Biol 2007, 9:797-803. 10.1038/ncb1605, 17558395.
    • (2007) Nat Cell Biol , vol.9 , pp. 797-803
    • Mougous, J.D.1    Gifford, C.A.2    Ramsdell, T.L.3    Mekalanos, J.J.4
  • 54
    • 33745171425 scopus 로고    scopus 로고
    • The galactophilic lectin, LecA, contributes to biofilm development in Pseudomonas aeruginosa
    • 10.1111/j.1462-2920.2006.001001.x, 16689730
    • Diggle SP, Stacey RE, Dodd C, Camara M, Williams P, Winzer K. The galactophilic lectin, LecA, contributes to biofilm development in Pseudomonas aeruginosa. Environ Microbiol 2006, 8:1095-1104. 10.1111/j.1462-2920.2006.001001.x, 16689730.
    • (2006) Environ Microbiol , vol.8 , pp. 1095-1104
    • Diggle, S.P.1    Stacey, R.E.2    Dodd, C.3    Camara, M.4    Williams, P.5    Winzer, K.6
  • 55
    • 77954469348 scopus 로고    scopus 로고
    • Multidrug-resistant Pseudomonas aeruginosa and Acinetobacter baumannii: resistance mechanisms and implications for therapy
    • 10.1586/eri.09.108, 20014903
    • Zavascki AP, Carvalhaes CG, Picao RC, Gales AC. Multidrug-resistant Pseudomonas aeruginosa and Acinetobacter baumannii: resistance mechanisms and implications for therapy. Expert Rev Anti Infect Ther 2010, 8:71-93. 10.1586/eri.09.108, 20014903.
    • (2010) Expert Rev Anti Infect Ther , vol.8 , pp. 71-93
    • Zavascki, A.P.1    Carvalhaes, C.G.2    Picao, R.C.3    Gales, A.C.4
  • 56
    • 59649115459 scopus 로고    scopus 로고
    • AmpC beta-lactamases
    • 10.1128/CMR.00036-08, 2620637, 19136439 , Table of Contents
    • Jacoby GA. AmpC beta-lactamases. Clin Microbiol Rev 2009, 22:161-182, Table of Contents. 10.1128/CMR.00036-08, 2620637, 19136439.
    • (2009) Clin Microbiol Rev , vol.22 , pp. 161-182
    • Jacoby, G.A.1
  • 57
    • 33747179934 scopus 로고    scopus 로고
    • The beta-lactamase threat in Enterobacteriaceae, Pseudomonas and Acinetobacter
    • 10.1016/j.tim.2006.07.008, 16876996
    • Livermore DM, Woodford N. The beta-lactamase threat in Enterobacteriaceae, Pseudomonas and Acinetobacter. Trends Microbiol 2006, 14:413-420. 10.1016/j.tim.2006.07.008, 16876996.
    • (2006) Trends Microbiol , vol.14 , pp. 413-420
    • Livermore, D.M.1    Woodford, N.2
  • 58
    • 0029129966 scopus 로고
    • Role of mexA-mexB-oprM in antibiotic efflux in Pseudomonas aeruginosa
    • 162861, 8540696
    • Li XZ, Nikaido H, Poole K. Role of mexA-mexB-oprM in antibiotic efflux in Pseudomonas aeruginosa. Antimicrob Agents Chemother 1995, 39:1948-1953. 162861, 8540696.
    • (1995) Antimicrob Agents Chemother , vol.39 , pp. 1948-1953
    • Li, X.Z.1    Nikaido, H.2    Poole, K.3
  • 59
    • 0242648332 scopus 로고    scopus 로고
    • Overexpression of the mexC-mexD-oprJ efflux operon in nfxB-type multidrug-resistant strains of Pseudomonas aeruginosa
    • 10.1046/j.1365-2958.1996.281397.x, 8878035
    • Poole K, Gotoh N, Tsujimoto H, Zhao Q, Wada A, Yamasaki T, Neshat S, Yamagishi J, Li XZ, Nishino T. Overexpression of the mexC-mexD-oprJ efflux operon in nfxB-type multidrug-resistant strains of Pseudomonas aeruginosa. Mol Microbiol 1996, 21:713-724. 10.1046/j.1365-2958.1996.281397.x, 8878035.
    • (1996) Mol Microbiol , vol.21 , pp. 713-724
    • Poole, K.1    Gotoh, N.2    Tsujimoto, H.3    Zhao, Q.4    Wada, A.5    Yamasaki, T.6    Neshat, S.7    Yamagishi, J.8    Li, X.Z.9    Nishino, T.10
  • 60
    • 0031016991 scopus 로고    scopus 로고
    • Characterization of MexE-MexF-OprN, a positively regulated multidrug efflux system of Pseudomonas aeruginosa
    • 10.1046/j.1365-2958.1997.2281594.x, 9044268
    • Kohler T, Michea-Hamzehpour M, Henze U, Gotoh N, Curty LK, Pechere JC. Characterization of MexE-MexF-OprN, a positively regulated multidrug efflux system of Pseudomonas aeruginosa. Mol Microbiol 1997, 23:345-354. 10.1046/j.1365-2958.1997.2281594.x, 9044268.
    • (1997) Mol Microbiol , vol.23 , pp. 345-354
    • Kohler, T.1    Michea-Hamzehpour, M.2    Henze, U.3    Gotoh, N.4    Curty, L.K.5    Pechere, J.C.6
  • 61
    • 0032414382 scopus 로고    scopus 로고
    • Mechanisms of quinolone resistance in clinical strains of Pseudomonas aeruginosa
    • 10.1089/mdr.1998.4.257, 9988043
    • Jalal S, Wretlind B. Mechanisms of quinolone resistance in clinical strains of Pseudomonas aeruginosa. Microb Drug Resist 1998, 4:257-261. 10.1089/mdr.1998.4.257, 9988043.
    • (1998) Microb Drug Resist , vol.4 , pp. 257-261
    • Jalal, S.1    Wretlind, B.2
  • 63
  • 65
    • 0033485517 scopus 로고    scopus 로고
    • Improved microbial gene identification with GLIMMER
    • 10.1093/nar/27.23.4636, 148753, 10556321
    • Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Improved microbial gene identification with GLIMMER. Nucleic Acids Res 1999, 27:4636-4641. 10.1093/nar/27.23.4636, 148753, 10556321.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4636-4641
    • Delcher, A.L.1    Harmon, D.2    Kasif, S.3    White, O.4    Salzberg, S.L.5
  • 66
    • 0036087630 scopus 로고    scopus 로고
    • CDD: a database of conserved domain alignments with links to domain three-dimensional structure
    • 10.1093/nar/30.1.281, 99109, 11752315
    • Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY, Bryant SH. CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res 2002, 30:281-283. 10.1093/nar/30.1.281, 99109, 11752315.
    • (2002) Nucleic Acids Res , vol.30 , pp. 281-283
    • Marchler-Bauer, A.1    Panchenko, A.R.2    Shoemaker, B.A.3    Thiessen, P.A.4    Geer, L.Y.5    Bryant, S.H.6
  • 67
    • 15844431346 scopus 로고    scopus 로고
    • PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
    • 10.1093/bioinformatics/bti057, 15501914
    • Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, Ester M, Brinkman FS. PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 2005, 21:617-623. 10.1093/bioinformatics/bti057, 15501914.
    • (2005) Bioinformatics , vol.21 , pp. 617-623
    • Gardy, J.L.1    Laird, M.R.2    Chen, F.3    Rey, S.4    Walsh, C.J.5    Ester, M.6    Brinkman, F.S.7
  • 68
    • 0041341888 scopus 로고    scopus 로고
    • Prediction of lipoprotein signal peptides in Gram-negative bacteria
    • 10.1110/ps.0303703, 2323952, 12876315
    • Juncker AS, Willenbrock H, Von Heijne G, Brunak S, Nielsen H, Krogh A. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci 2003, 12:1652-1662. 10.1110/ps.0303703, 2323952, 12876315.
    • (2003) Protein Sci , vol.12 , pp. 1652-1662
    • Juncker, A.S.1    Willenbrock, H.2    Von Heijne, G.3    Brunak, S.4    Nielsen, H.5    Krogh, A.6
  • 69
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • 10.1093/nar/25.5.955, 146525, 9023104
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 10.1093/nar/25.5.955, 146525, 9023104.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 70
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092, 17488738
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599. 10.1093/molbev/msm092, 17488738.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 72
    • 0024058295 scopus 로고
    • Role of a phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici
    • 211320, 2841289
    • Thomashow LS, Weller DM. Role of a phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici. J Bacteriol 1988, 170:3499-3508. 211320, 2841289.
    • (1988) J Bacteriol , vol.170 , pp. 3499-3508
    • Thomashow, L.S.1    Weller, D.M.2
  • 73
    • 41949112457 scopus 로고    scopus 로고
    • In vivo growth of Pseudomonas aeruginosa strains PAO1 and PA14 and the hypervirulent strain LESB58 in a rat model of chronic lung infection
    • 10.1128/JB.01572-07, 2293253, 18083816
    • Kukavica-Ibrulj I, Bragonzi A, Paroni M, Winstanley C, Sanschagrin F, O'Toole GA, Levesque RC. In vivo growth of Pseudomonas aeruginosa strains PAO1 and PA14 and the hypervirulent strain LESB58 in a rat model of chronic lung infection. J Bacteriol 2008, 190:2804-2813. 10.1128/JB.01572-07, 2293253, 18083816.
    • (2008) J Bacteriol , vol.190 , pp. 2804-2813
    • Kukavica-Ibrulj, I.1    Bragonzi, A.2    Paroni, M.3    Winstanley, C.4    Sanschagrin, F.5    O'Toole, G.A.6    Levesque, R.C.7
  • 74
    • 0030305457 scopus 로고    scopus 로고
    • R: a language for data analysis and graphics
    • Ihaka R, Gentleman R. R: a language for data analysis and graphics. J Comput Graph Stat 1996, 5:299-314.
    • (1996) J Comput Graph Stat , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 75
    • 13244252363 scopus 로고    scopus 로고
    • GenomeViz: visualizing microbial genomes
    • 10.1186/1471-2105-5-198, 544189, 15601465
    • Ghai R, Hain T, Chakraborty T. GenomeViz: visualizing microbial genomes. BMC Bioinformatics 2004, 5:198. 10.1186/1471-2105-5-198, 544189, 15601465.
    • (2004) BMC Bioinformatics , vol.5 , pp. 198
    • Ghai, R.1    Hain, T.2    Chakraborty, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.