-
1
-
-
80052047534
-
Information theory based approaches to cellular signaling
-
C. Waltermann, and E. Klipp Information theory based approaches to cellular signaling Biochim. Biophys. Acta Gen. Subj. 1810 10 2011 924 932
-
(2011)
Biochim. Biophys. Acta Gen. Subj.
, vol.1810
, Issue.10
, pp. 924-932
-
-
Waltermann, C.1
Klipp, E.2
-
3
-
-
77955593347
-
MicroRNA: A master regulator of cellular processes for bioengineering systems
-
W. Sun, Y.-S.J. Li, H.-D. Huang, J.Y.-J. Shyy, and S. Chien MicroRNA: a master regulator of cellular processes for bioengineering systems Annu. Rev. Biomed. Eng. 12 2010 1 27
-
(2010)
Annu. Rev. Biomed. Eng.
, vol.12
, pp. 1-27
-
-
Sun, W.1
Li, Y.-S.J.2
Huang, H.-D.3
Shyy, J.Y.-J.4
Chien, S.5
-
4
-
-
77950824636
-
De novo generation of mutually orthogonal aminoacyl-tRNA synthetase/tRNA pairs
-
H. Neumann, A.L. Slusarczyk, and J.W. Chin De novo generation of mutually orthogonal aminoacyl-tRNA synthetase/tRNA pairs J. Am. Chem. Soc. 132 7 2010 2142 2144
-
(2010)
J. Am. Chem. Soc.
, vol.132
, Issue.7
, pp. 2142-2144
-
-
Neumann, H.1
Slusarczyk, A.L.2
Chin, J.W.3
-
5
-
-
77953584054
-
Creation of a bacterial cell controlled by a chemically synthesized genome
-
D.G. Gibson, J.I. Glass, C. Lartigue, V.N. Noskov, R.-Y. Chuang, M.A. Algire, G.A. Benders, M.G. Montague, L. Ma, M.M. Moodie, C. Merryman, S. Vashee, R. Krishnakumar, N. Assad-Garcia, C. Andrews-Pfannkoch, E.A. Denisova, L. Young, Z.-Q. Qi, T.H. Segall-Shapiro, C.H. Calvey, P.P. Parmar, C.A. Hutchison III, H.O. Smith, and J.C. Venter Creation of a bacterial cell controlled by a chemically synthesized genome Science 329 5987 2010 52 56
-
(2010)
Science
, vol.329
, Issue.5987
, pp. 52-56
-
-
Gibson, D.G.1
Glass, J.I.2
Lartigue, C.3
Noskov, V.N.4
Chuang, R.-Y.5
Algire, M.A.6
Benders, G.A.7
Montague, M.G.8
Ma, L.9
Moodie, M.M.10
Merryman, C.11
Vashee, S.12
Krishnakumar, R.13
Assad-Garcia, N.14
Andrews-Pfannkoch, C.15
Denisova, E.A.16
Young, L.17
Qi, Z.-Q.18
Segall-Shapiro, T.H.19
Calvey, C.H.20
Parmar, P.P.21
Hutchison Iii, C.A.22
Smith, H.O.23
Venter, J.C.24
more..
-
6
-
-
71449096836
-
Strategies for cellular decision-making
-
T.J. Perkins, and P.S. Swain Strategies for cellular decision-making Mol. Syst. Biol. 5 2009 326
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 326
-
-
Perkins, T.J.1
Swain, P.S.2
-
7
-
-
84856043672
-
A mathematical theory of communication
-
(623-656)
-
C.E. Shannon A mathematical theory of communication Bell Syst. Tech. J. 27 1948 379 423 (623-656)
-
(1948)
Bell Syst. Tech. J.
, vol.27
, pp. 379-423
-
-
Shannon, C.E.1
-
12
-
-
65049086512
-
Biological information
-
A. Sarkar, S. Plutnyski, Blackwell Malden/MA
-
S. Artmann Biological information A. Sarkar, S. Plutnyski, A Companion to the Philosophy of Biology 2008 Blackwell Malden/MA 22 39
-
(2008)
A Companion to the Philosophy of Biology
, pp. 22-39
-
-
Artmann, S.1
-
13
-
-
0002669456
-
The context-dependence of biological information
-
K. Kornwachs, K. Jacoby, Akademie Verlag Berlin
-
B.-O. Küppers The context-dependence of biological information K. Kornwachs, K. Jacoby, Information 1996 Akademie Verlag Berlin 137 145
-
(1996)
Information
, pp. 137-145
-
-
Küppers, B.-O.1
-
14
-
-
80052055425
-
The world of biological complexity
-
S.J. Dick, Templeton Foundation Press Radnor/PA
-
B.-O. Küppers The world of biological complexity S.J. Dick, Many Worlds 2000 Templeton Foundation Press Radnor/PA 32 43
-
(2000)
Many Worlds
, pp. 32-43
-
-
Küppers, B.-O.1
-
15
-
-
0003461589
-
Information theory and the theory of algorithms
-
Kluwer Dordrecht
-
A. Kolmogorov Information theory and the theory of algorithms Vol. 3 of Selected Works 1993 Kluwer Dordrecht
-
(1993)
Vol. 3 of Selected Works
-
-
Kolmogorov, A.1
-
21
-
-
65049086829
-
Computing codes versus interpreting life: Two alternative ways of synthesizing biological knowledge through semantics
-
M. Barbieri, Springer Dordrecht
-
S. Artmann Computing codes versus interpreting life: two alternative ways of synthesizing biological knowledge through semantics M. Barbieri, Introduction to Biosemiotics: The New Biological Synthesis 2007 Springer Dordrecht 209 233
-
(2007)
Introduction to Biosemiotics: The New Biological Synthesis
, pp. 209-233
-
-
Artmann, S.1
-
22
-
-
79959988994
-
Identifying molecular organic codes in reaction networks
-
G. Kampis, E. Szathmáry, Springer Heidelberg
-
D. Görlich, and P. Dittrich Identifying molecular organic codes in reaction networks G. Kampis, E. Szathmáry, 10th European Conference, ECAL 2009, Budapest, Hungary, September 13-16, 2009 Vol. 5777 of Lecture Notes in Computer Science 2011 Springer Heidelberg 305 312
-
(2011)
10th European Conference, ECAL 2009, Budapest, Hungary, September 13-16, 2009 Vol. 5777 of Lecture Notes in Computer Science
, pp. 305-312
-
-
Görlich, D.1
Dittrich, P.2
-
24
-
-
0003644303
-
-
Alfred Knopf New York/NY (Originally published 1970)
-
J. Monod Chance and Necessity 1971 Alfred Knopf New York/NY (Originally published 1970)
-
(1971)
Chance and Necessity
-
-
Monod, J.1
-
25
-
-
65249175101
-
Three types of semiosis
-
M. Barbieri Three types of semiosis Biosemiotics 2 2009 19 30
-
(2009)
Biosemiotics
, vol.2
, pp. 19-30
-
-
Barbieri, M.1
-
26
-
-
65049091651
-
Basic semiosis as code-based control
-
S. Artmann Basic semiosis as code-based control Biosemiotics 2 2009 31 38
-
(2009)
Biosemiotics
, vol.2
, pp. 31-38
-
-
Artmann, S.1
-
27
-
-
0010092443
-
Metalanguage as a linguistic problem
-
R. Jakobson, University of Michigan Press (Originally published 1956)
-
R. Jakobson Metalanguage as a linguistic problem R. Jakobson, The Framework of Language 1980 University of Michigan Press 81 92 (Originally published 1956)
-
(1980)
The Framework of Language
, pp. 81-92
-
-
Jakobson, R.1
-
28
-
-
80052070231
-
Information-theoretic aspects of control in a bio-hybrid robot device
-
S. Bullock, J. Noble, R. Watson, M. Bedau, MIT Press Cambridge/MA
-
S. Artmann, S. Tsuda, and K.-P. Zauner Information-theoretic aspects of control in a bio-hybrid robot device S. Bullock, J. Noble, R. Watson, M. Bedau, Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems 2008 MIT Press Cambridge/MA 33 40
-
(2008)
Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems
, pp. 33-40
-
-
Artmann, S.1
Tsuda, S.2
Zauner, K.-P.3
-
29
-
-
80052077183
-
The Phi-Bot
-
A. Adamatzky, M. Komosinski, Springer Dordrecht
-
S. Tsuda, S. Artmann, and K.-P. Zauner The Phi-Bot A. Adamatzky, M. Komosinski, Artificial Life Models in Hardware 2009 Springer Dordrecht 213 232
-
(2009)
Artificial Life Models in Hardware
, pp. 213-232
-
-
Tsuda, S.1
Artmann, S.2
Zauner, K.-P.3
-
30
-
-
80052049264
-
-
Princeton University Press Princeton/NJ
-
D. Lewis Convention 1968 Princeton University Press Princeton/NJ
-
(1968)
Convention
-
-
Lewis, D.1
-
31
-
-
52149123149
-
Essential conditions for evolution of communication within a species
-
A. Feigel Essential conditions for evolution of communication within a species J. Theor. Biol. 254 2008 768 774
-
(2008)
J. Theor. Biol.
, vol.254
, pp. 768-774
-
-
Feigel, A.1
-
32
-
-
63449132404
-
Origin and evolution of the genetic code: The universal enigma
-
E.V. Koonin, and A.S. Novozhilov Origin and evolution of the genetic code: the universal enigma IUBMB Life 61 2 2009 99 111
-
(2009)
IUBMB Life
, vol.61
, Issue.2
, pp. 99-111
-
-
Koonin, E.V.1
Novozhilov, A.S.2
-
33
-
-
67649412114
-
Codases: Fifty years after
-
M.G. Safro, and N.A. Moor Codases: fifty years after Mol. Biol. (Mosk) 43 2 2009 230 242
-
(2009)
Mol. Biol. (Mosk)
, vol.43
, Issue.2
, pp. 230-242
-
-
Safro, M.G.1
Moor, N.A.2
-
34
-
-
0025511297
-
Aminoacyl-tRNA synthetases (codases) and their noncanonical functions
-
L.L. Kiselev Aminoacyl-tRNA synthetases (codases) and their noncanonical functions Mol. Biol. (Mosk) 24 6 1990 1445 1473
-
(1990)
Mol. Biol. (Mosk)
, vol.24
, Issue.6
, pp. 1445-1473
-
-
Kiselev, L.L.1
-
35
-
-
46149119868
-
Biosemiotics: A new understanding of life
-
M. Barbieri Biosemiotics: a new understanding of life Naturwissenschaften 95 7 2008 577 599
-
(2008)
Naturwissenschaften
, vol.95
, Issue.7
, pp. 577-599
-
-
Barbieri, M.1
-
37
-
-
42149147377
-
Histone modifications and chromatin dynamics: A focus on filamentous fungi
-
DOI 10.1111/j.1574-6976.2007.00100.x
-
G. Brosch, P. Loidl, and S. Graessle Histone modifications and chromatin dynamics: a focus on filamentous fungi FEMS Microbiol. Rev. 32 3 2008 409 439 (Pubitemid 351538743)
-
(2008)
FEMS Microbiology Reviews
, vol.32
, Issue.3
, pp. 409-439
-
-
Brosch, G.1
Loidl, P.2
Graessle, S.3
-
38
-
-
44649122151
-
Role of histone modifications in defining chromatin structure and function
-
DOI 10.1515/BC.2008.048
-
K.A. Gelato, and W. Fischle Role of histone modifications in defining chromatin structure and function Biol. Chem. 389 4 2008 353 363 (Pubitemid 351773917)
-
(2008)
Biological Chemistry
, vol.389
, Issue.4
, pp. 353-363
-
-
Gelato, K.A.1
Fischle, W.2
-
39
-
-
78149379276
-
Chemical tools in chromatin research
-
D. Schwarzer Chemical tools in chromatin research J. Pept. Sci. 16 10 2010 530 537
-
(2010)
J. Pept. Sci.
, vol.16
, Issue.10
, pp. 530-537
-
-
Schwarzer, D.1
-
40
-
-
77956153243
-
The language of histone crosstalk
-
J.-S. Lee, E. Smith, and A. Shilatifard The language of histone crosstalk Cell 142 5 2010 682 685
-
(2010)
Cell
, vol.142
, Issue.5
, pp. 682-685
-
-
Lee, J.-S.1
Smith, E.2
Shilatifard, A.3
-
41
-
-
0025122175
-
On the biological role of histone acetylation
-
A. Csordas On the biological role of histone acetylation Biochem. J. 265 1 1990 23 38 (Pubitemid 20037670)
-
(1990)
Biochemical Journal
, vol.265
, Issue.1
, pp. 23-38
-
-
Csordas, A.1
-
42
-
-
0027525056
-
Decoding the nucleosome
-
DOI 10.1016/0092-8674(93)90673-E
-
B.M. Turner Decoding the nucleosome Cell 75 1 1993 5 8 (Pubitemid 23306015)
-
(1993)
Cell
, vol.75
, Issue.1
, pp. 5-8
-
-
Turner, B.M.1
-
43
-
-
0033848849
-
Histone acetylation and an epigenetic code
-
B.M. Turner Histone acetylation and an epigenetic code Bioessays 22 9 2000 836 845
-
(2000)
Bioessays
, vol.22
, Issue.9
, pp. 836-845
-
-
Turner, B.M.1
-
44
-
-
0034610814
-
The language of covalent histone modifications
-
DOI 10.1038/47412
-
B.D. Strahl, and C.D. Allis The language of covalent histone modifications Nature 403 2000 41 45 (Pubitemid 30038513)
-
(2000)
Nature
, vol.403
, Issue.6765
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
45
-
-
0035839136
-
Translating the histone code
-
DOI 10.1126/science.1063127
-
T. Jenuwein, and C.D. Allis Translating the histone code Science 293 5532 2001 1074 1080 (Pubitemid 32758077)
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
46
-
-
68349135058
-
Histone modification patterns and epigenetic codes
-
A. Lennartsson, and K. Ekwall Histone modification patterns and epigenetic codes Biochim. Biophys. Acta 1790 9 2009 863 868
-
(2009)
Biochim. Biophys. Acta
, vol.1790
, Issue.9
, pp. 863-868
-
-
Lennartsson, A.1
Ekwall, K.2
-
47
-
-
33845877732
-
Defining an epigenetic code
-
DOI 10.1038/ncb0107-2, PII NCB0107-2
-
B.M. Turner Defining an epigenetic code Nat. Cell Biol. 9 1 2007 2 6 10.1038/ncb0107-2 (Pubitemid 46024187)
-
(2007)
Nature Cell Biology
, vol.9
, Issue.1
, pp. 2-6
-
-
Turner, B.M.1
-
48
-
-
0036850325
-
Cellular memory and the histone code
-
DOI 10.1016/S0092-8674(02)01080-2
-
B.M. Turner Cellular memory and the histone code Cell 111 3 2002 285 291 (Pubitemid 35341385)
-
(2002)
Cell
, vol.111
, Issue.3
, pp. 285-291
-
-
Turner, B.M.1
-
50
-
-
17244368913
-
Genomic characterization reveals a simple histone H4 acetylation code
-
DOI 10.1073/pnas.0500136102
-
M.F. Dion, S.J. Altschuler, L.F. Wu, and O.J. Rando Genomic characterization reveals a simple histone h4 acetylation code Proc. Natl. Acad. Sci. U. S. A. 102 15 2005 5501 5506 (Pubitemid 40530287)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.15
, pp. 5501-5506
-
-
Dion, M.F.1
Altschuler, S.J.2
Wu, L.F.3
Rando, O.J.4
-
51
-
-
15744396813
-
The key to development: Interpreting the histone code?
-
DOI 10.1016/j.gde.2005.01.005, Chromosomes and Expression Mechanisms
-
R. Margueron, P. Trojer, and D. Reinberg The key to development: interpreting the histone code? Curr. Opin. Genet. Dev. 15 2 2005 163 176 (Pubitemid 40416728)
-
(2005)
Current Opinion in Genetics and Development
, vol.15
, Issue.2
, pp. 163-176
-
-
Margueron, R.1
Trojer, P.2
Reinberg, D.3
-
52
-
-
77953621315
-
Innovation in gene regulation: The case of chromatin computation
-
S.J. Prohaska, P.F. Stadler, and D.C. Krakauer Innovation in gene regulation: the case of chromatin computation J. Theor. Biol. 265 1 2010 27 44
-
(2010)
J. Theor. Biol.
, vol.265
, Issue.1
, pp. 27-44
-
-
Prohaska, S.J.1
Stadler, P.F.2
Krakauer, D.C.3
-
53
-
-
70349669271
-
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain
-
J. Moriniere, S. Rousseaux, U. Steuerwald, M. Soler-Lopez, S. Curtet, A.-L. Vitte, J. Govin, J. Gaucher, K. Sadoul, D.J. Hart, J. Krijgsveld, S. Khochbin, C.W. Mueller, and C. Petosa Cooperative binding of two acetylation marks on a histone tail by a single bromodomain Nature 461 7264 2009 664 668
-
(2009)
Nature
, vol.461
, Issue.7264
, pp. 664-668
-
-
Moriniere, J.1
Rousseaux, S.2
Steuerwald, U.3
Soler-Lopez, M.4
Curtet, S.5
Vitte, A.-L.6
Govin, J.7
Gaucher, J.8
Sadoul, K.9
Hart, D.J.10
Krijgsveld, J.11
Khochbin, S.12
Mueller, C.W.13
Petosa, C.14
-
54
-
-
33644841721
-
Protein linguistics - A grammar for modular protein assembly?
-
DOI 10.1038/nrm1785, PII N1785
-
M. Gimona Protein linguistics - a grammar for modular protein assembly? Nat. Rev. Mol. Cell Biol. 7 1 2006 68 73 (Pubitemid 43361574)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.1
, pp. 68-73
-
-
Gimona, M.1
-
55
-
-
58249086425
-
Understanding the words of chromatin regulation
-
J.I. Wu, J. Lessard, and G.R. Crabtree Understanding the words of chromatin regulation Cell 136 2 2009 200 206
-
(2009)
Cell
, vol.136
, Issue.2
, pp. 200-206
-
-
Wu, J.I.1
Lessard, J.2
Crabtree, G.R.3
-
56
-
-
0034079042
-
Biological information transfer beyond the genetic code: The sugar code
-
H.-J. Gabius Biological information transfer beyond the genetic code: the sugar code Naturwissenschaften 87 3 2000 108 121 (Pubitemid 30210616)
-
(2000)
Naturwissenschaften
, vol.87
, Issue.3
, pp. 108-121
-
-
Gabius, H.-J.1
-
57
-
-
0037136404
-
The sugar code: Functional lectinomics
-
DOI 10.1016/S0304-4165(02)00306-9, PII S0304416502003069
-
H.J. Gabius, S. Andre, H. Kaltner, and H. Siebert The sugar code: functional lectinomics Biochim. Biophys. Acta Gen. Subj. 1572 2-3 2002 165 177 (Pubitemid 35246342)
-
(2002)
Biochimica et Biophysica Acta - General Subjects
, vol.1572
, Issue.2-3
, pp. 165-177
-
-
Gabius, H.-J.1
Andre, S.2
Kaltner, H.3
Siebert, H.-C.4
-
59
-
-
77149173217
-
The biochemical basis and coding capacity of the sugar code
-
H.-J. Gabius, Wiley-VCH Weinheim
-
H. Rüdiger, and H.-J. Gabius The biochemical basis and coding capacity of the sugar code H.-J. Gabius, The Sugar Code: Fundamentals of Glycosciences 2009 Wiley-VCH Weinheim 3 13
-
(2009)
The Sugar Code: Fundamentals of Glycosciences
, pp. 3-13
-
-
Rüdiger, H.1
Gabius, H.-J.2
-
60
-
-
0001810168
-
The information-storing potential of the sugar code
-
H.-J. Gabius, S. Gabius, Chapman & Hall London
-
R. Laine The information-storing potential of the sugar code H.-J. Gabius, S. Gabius, Glycosciences: Status and Perspectives 1997 Chapman & Hall London 1 14
-
(1997)
Glycosciences: Status and Perspectives
, pp. 1-14
-
-
Laine, R.1
-
64
-
-
0024414280
-
Lectins as cell recognition molecules
-
N. Sharon, and H. Lis Lectins as cell recognition molecules Science 246 4927 1989 227 234 (Pubitemid 19264635)
-
(1989)
Science
, vol.246
, Issue.4927
, pp. 227-234
-
-
Sharon, N.1
Lis, H.2
-
65
-
-
0028003496
-
The arrival of the fittest: Toward a theory of biological organization
-
W. Fontana, and L. Buss The arrival of the fittest: toward a theory of biological organization Bull. Math. Biol. 56 1994 1 64
-
(1994)
Bull. Math. Biol.
, vol.56
, pp. 1-64
-
-
Fontana, W.1
Buss, L.2
-
66
-
-
42449120195
-
A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost
-
T. Tlusty A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost Phys. Biol. 5 1 2008 16001
-
(2008)
Phys. Biol.
, vol.5
, Issue.1
, pp. 16001
-
-
Tlusty, T.1
-
67
-
-
38749149160
-
Rate-distortion scenario for the emergence and evolution of noisy molecular codes
-
T. Tlusty Rate-distortion scenario for the emergence and evolution of noisy molecular codes Phys. Rev. Lett. 100 4 2008 048101
-
(2008)
Phys. Rev. Lett.
, vol.100
, Issue.4
, pp. 048101
-
-
Tlusty, T.1
-
68
-
-
79953164593
-
Introducing dynamics into the field of biosemiotics: A formal account with examples from language and immunology
-
J. De Beule, E. Hovig, and M. Benson Introducing dynamics into the field of biosemiotics: A formal account with examples from language and immunology Biosemiotics 4 1 2010 5 24
-
(2010)
Biosemiotics
, vol.4
, Issue.1
, pp. 5-24
-
-
De Beule, J.1
Hovig, E.2
Benson, M.3
-
69
-
-
7444245710
-
A comprehensive modeling study of hydrogen oxidation
-
M.O. Conaire, H.J. Curran, J.M. Simmie, W.J. Pitz, and C. Westbrook A comprehensive modeling study of hydrogen oxidation Int. J. Chem. Kinet. 36 11 2004 603 622
-
(2004)
Int. J. Chem. Kinet.
, vol.36
, Issue.11
, pp. 603-622
-
-
Conaire, M.O.1
Curran, H.J.2
Simmie, J.M.3
Pitz, W.J.4
Westbrook, C.5
-
70
-
-
0033098763
-
A detailed chemical kinetic model for high temperature ethanol oxidation
-
N.M. Marinov A detailed chemical kinetic model for high temperature ethanol oxidation Int. J. Chem. Kinet. 31 1999 183 220
-
(1999)
Int. J. Chem. Kinet.
, vol.31
, pp. 183-220
-
-
Marinov, N.M.1
-
72
-
-
0034258018
-
Experimental and modeling study of premixed atmospheric-pressure dimethyl ether-air flames
-
E. Kaiser, T. Wallington, M.D. Hurley, J. Platz, H.J. Curran, W.J. Pitz, and C.K. Westbrook Experimental and modeling study of premixed atmospheric-pressure dimethyl ether-air flames J. Phys. Chem. 104 35 2000 8194 8206
-
(2000)
J. Phys. Chem.
, vol.104
, Issue.35
, pp. 8194-8206
-
-
Kaiser, E.1
Wallington, T.2
Hurley, M.D.3
Platz, J.4
Curran, H.J.5
Pitz, W.J.6
Westbrook, C.K.7
-
73
-
-
0028505157
-
A photochemical model of the martian athmosphere
-
H. Nair, M. Allen, A.D. Anbar, and Y.L. Yung A photochemical model of the martian athmosphere Icarus 111 1994 124 150
-
(1994)
Icarus
, vol.111
, pp. 124-150
-
-
Nair, H.1
Allen, M.2
Anbar, A.D.3
Yung, Y.L.4
|