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Volumn 1810, Issue 10, 2011, Pages 914-923

Cells as semantic systems

Author keywords

Algebraic code identification; Molecular code; Molecular information processing; Semantics of molecular information

Indexed keywords

GLYCAN; HISTONE;

EID: 80052053075     PISSN: 03044165     EISSN: 18728006     Source Type: Journal    
DOI: 10.1016/j.bbagen.2011.04.004     Document Type: Review
Times cited : (16)

References (74)
  • 1
    • 80052047534 scopus 로고    scopus 로고
    • Information theory based approaches to cellular signaling
    • C. Waltermann, and E. Klipp Information theory based approaches to cellular signaling Biochim. Biophys. Acta Gen. Subj. 1810 10 2011 924 932
    • (2011) Biochim. Biophys. Acta Gen. Subj. , vol.1810 , Issue.10 , pp. 924-932
    • Waltermann, C.1    Klipp, E.2
  • 4
    • 77950824636 scopus 로고    scopus 로고
    • De novo generation of mutually orthogonal aminoacyl-tRNA synthetase/tRNA pairs
    • H. Neumann, A.L. Slusarczyk, and J.W. Chin De novo generation of mutually orthogonal aminoacyl-tRNA synthetase/tRNA pairs J. Am. Chem. Soc. 132 7 2010 2142 2144
    • (2010) J. Am. Chem. Soc. , vol.132 , Issue.7 , pp. 2142-2144
    • Neumann, H.1    Slusarczyk, A.L.2    Chin, J.W.3
  • 6
    • 71449096836 scopus 로고    scopus 로고
    • Strategies for cellular decision-making
    • T.J. Perkins, and P.S. Swain Strategies for cellular decision-making Mol. Syst. Biol. 5 2009 326
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 326
    • Perkins, T.J.1    Swain, P.S.2
  • 7
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • (623-656)
    • C.E. Shannon A mathematical theory of communication Bell Syst. Tech. J. 27 1948 379 423 (623-656)
    • (1948) Bell Syst. Tech. J. , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 12
    • 65049086512 scopus 로고    scopus 로고
    • Biological information
    • A. Sarkar, S. Plutnyski, Blackwell Malden/MA
    • S. Artmann Biological information A. Sarkar, S. Plutnyski, A Companion to the Philosophy of Biology 2008 Blackwell Malden/MA 22 39
    • (2008) A Companion to the Philosophy of Biology , pp. 22-39
    • Artmann, S.1
  • 13
    • 0002669456 scopus 로고    scopus 로고
    • The context-dependence of biological information
    • K. Kornwachs, K. Jacoby, Akademie Verlag Berlin
    • B.-O. Küppers The context-dependence of biological information K. Kornwachs, K. Jacoby, Information 1996 Akademie Verlag Berlin 137 145
    • (1996) Information , pp. 137-145
    • Küppers, B.-O.1
  • 14
    • 80052055425 scopus 로고    scopus 로고
    • The world of biological complexity
    • S.J. Dick, Templeton Foundation Press Radnor/PA
    • B.-O. Küppers The world of biological complexity S.J. Dick, Many Worlds 2000 Templeton Foundation Press Radnor/PA 32 43
    • (2000) Many Worlds , pp. 32-43
    • Küppers, B.-O.1
  • 15
    • 0003461589 scopus 로고
    • Information theory and the theory of algorithms
    • Kluwer Dordrecht
    • A. Kolmogorov Information theory and the theory of algorithms Vol. 3 of Selected Works 1993 Kluwer Dordrecht
    • (1993) Vol. 3 of Selected Works
    • Kolmogorov, A.1
  • 21
    • 65049086829 scopus 로고    scopus 로고
    • Computing codes versus interpreting life: Two alternative ways of synthesizing biological knowledge through semantics
    • M. Barbieri, Springer Dordrecht
    • S. Artmann Computing codes versus interpreting life: two alternative ways of synthesizing biological knowledge through semantics M. Barbieri, Introduction to Biosemiotics: The New Biological Synthesis 2007 Springer Dordrecht 209 233
    • (2007) Introduction to Biosemiotics: The New Biological Synthesis , pp. 209-233
    • Artmann, S.1
  • 24
    • 0003644303 scopus 로고
    • Alfred Knopf New York/NY (Originally published 1970)
    • J. Monod Chance and Necessity 1971 Alfred Knopf New York/NY (Originally published 1970)
    • (1971) Chance and Necessity
    • Monod, J.1
  • 25
    • 65249175101 scopus 로고    scopus 로고
    • Three types of semiosis
    • M. Barbieri Three types of semiosis Biosemiotics 2 2009 19 30
    • (2009) Biosemiotics , vol.2 , pp. 19-30
    • Barbieri, M.1
  • 26
    • 65049091651 scopus 로고    scopus 로고
    • Basic semiosis as code-based control
    • S. Artmann Basic semiosis as code-based control Biosemiotics 2 2009 31 38
    • (2009) Biosemiotics , vol.2 , pp. 31-38
    • Artmann, S.1
  • 27
    • 0010092443 scopus 로고
    • Metalanguage as a linguistic problem
    • R. Jakobson, University of Michigan Press (Originally published 1956)
    • R. Jakobson Metalanguage as a linguistic problem R. Jakobson, The Framework of Language 1980 University of Michigan Press 81 92 (Originally published 1956)
    • (1980) The Framework of Language , pp. 81-92
    • Jakobson, R.1
  • 30
    • 80052049264 scopus 로고
    • Princeton University Press Princeton/NJ
    • D. Lewis Convention 1968 Princeton University Press Princeton/NJ
    • (1968) Convention
    • Lewis, D.1
  • 31
    • 52149123149 scopus 로고    scopus 로고
    • Essential conditions for evolution of communication within a species
    • A. Feigel Essential conditions for evolution of communication within a species J. Theor. Biol. 254 2008 768 774
    • (2008) J. Theor. Biol. , vol.254 , pp. 768-774
    • Feigel, A.1
  • 32
    • 63449132404 scopus 로고    scopus 로고
    • Origin and evolution of the genetic code: The universal enigma
    • E.V. Koonin, and A.S. Novozhilov Origin and evolution of the genetic code: the universal enigma IUBMB Life 61 2 2009 99 111
    • (2009) IUBMB Life , vol.61 , Issue.2 , pp. 99-111
    • Koonin, E.V.1    Novozhilov, A.S.2
  • 33
    • 67649412114 scopus 로고    scopus 로고
    • Codases: Fifty years after
    • M.G. Safro, and N.A. Moor Codases: fifty years after Mol. Biol. (Mosk) 43 2 2009 230 242
    • (2009) Mol. Biol. (Mosk) , vol.43 , Issue.2 , pp. 230-242
    • Safro, M.G.1    Moor, N.A.2
  • 34
    • 0025511297 scopus 로고
    • Aminoacyl-tRNA synthetases (codases) and their noncanonical functions
    • L.L. Kiselev Aminoacyl-tRNA synthetases (codases) and their noncanonical functions Mol. Biol. (Mosk) 24 6 1990 1445 1473
    • (1990) Mol. Biol. (Mosk) , vol.24 , Issue.6 , pp. 1445-1473
    • Kiselev, L.L.1
  • 35
    • 46149119868 scopus 로고    scopus 로고
    • Biosemiotics: A new understanding of life
    • M. Barbieri Biosemiotics: a new understanding of life Naturwissenschaften 95 7 2008 577 599
    • (2008) Naturwissenschaften , vol.95 , Issue.7 , pp. 577-599
    • Barbieri, M.1
  • 36
    • 0037376199 scopus 로고    scopus 로고
    • Histone and chromatin cross-talk
    • DOI 10.1016/S0955-0674(03)00013-9
    • W. Fischle, Y. Wang, and C.D. Allis Histone and chromatin cross-talk Curr. Opin. Cell Biol. 15 2 2003 172 183 (Pubitemid 36332192)
    • (2003) Current Opinion in Cell Biology , vol.15 , Issue.2 , pp. 172-183
    • Fischle, W.1    Wang, Y.2    Allis, C.D.3
  • 37
    • 42149147377 scopus 로고    scopus 로고
    • Histone modifications and chromatin dynamics: A focus on filamentous fungi
    • DOI 10.1111/j.1574-6976.2007.00100.x
    • G. Brosch, P. Loidl, and S. Graessle Histone modifications and chromatin dynamics: a focus on filamentous fungi FEMS Microbiol. Rev. 32 3 2008 409 439 (Pubitemid 351538743)
    • (2008) FEMS Microbiology Reviews , vol.32 , Issue.3 , pp. 409-439
    • Brosch, G.1    Loidl, P.2    Graessle, S.3
  • 38
    • 44649122151 scopus 로고    scopus 로고
    • Role of histone modifications in defining chromatin structure and function
    • DOI 10.1515/BC.2008.048
    • K.A. Gelato, and W. Fischle Role of histone modifications in defining chromatin structure and function Biol. Chem. 389 4 2008 353 363 (Pubitemid 351773917)
    • (2008) Biological Chemistry , vol.389 , Issue.4 , pp. 353-363
    • Gelato, K.A.1    Fischle, W.2
  • 39
    • 78149379276 scopus 로고    scopus 로고
    • Chemical tools in chromatin research
    • D. Schwarzer Chemical tools in chromatin research J. Pept. Sci. 16 10 2010 530 537
    • (2010) J. Pept. Sci. , vol.16 , Issue.10 , pp. 530-537
    • Schwarzer, D.1
  • 40
    • 77956153243 scopus 로고    scopus 로고
    • The language of histone crosstalk
    • J.-S. Lee, E. Smith, and A. Shilatifard The language of histone crosstalk Cell 142 5 2010 682 685
    • (2010) Cell , vol.142 , Issue.5 , pp. 682-685
    • Lee, J.-S.1    Smith, E.2    Shilatifard, A.3
  • 41
    • 0025122175 scopus 로고
    • On the biological role of histone acetylation
    • A. Csordas On the biological role of histone acetylation Biochem. J. 265 1 1990 23 38 (Pubitemid 20037670)
    • (1990) Biochemical Journal , vol.265 , Issue.1 , pp. 23-38
    • Csordas, A.1
  • 42
    • 0027525056 scopus 로고
    • Decoding the nucleosome
    • DOI 10.1016/0092-8674(93)90673-E
    • B.M. Turner Decoding the nucleosome Cell 75 1 1993 5 8 (Pubitemid 23306015)
    • (1993) Cell , vol.75 , Issue.1 , pp. 5-8
    • Turner, B.M.1
  • 43
    • 0033848849 scopus 로고    scopus 로고
    • Histone acetylation and an epigenetic code
    • B.M. Turner Histone acetylation and an epigenetic code Bioessays 22 9 2000 836 845
    • (2000) Bioessays , vol.22 , Issue.9 , pp. 836-845
    • Turner, B.M.1
  • 44
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • DOI 10.1038/47412
    • B.D. Strahl, and C.D. Allis The language of covalent histone modifications Nature 403 2000 41 45 (Pubitemid 30038513)
    • (2000) Nature , vol.403 , Issue.6765 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 45
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • DOI 10.1126/science.1063127
    • T. Jenuwein, and C.D. Allis Translating the histone code Science 293 5532 2001 1074 1080 (Pubitemid 32758077)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 46
    • 68349135058 scopus 로고    scopus 로고
    • Histone modification patterns and epigenetic codes
    • A. Lennartsson, and K. Ekwall Histone modification patterns and epigenetic codes Biochim. Biophys. Acta 1790 9 2009 863 868
    • (2009) Biochim. Biophys. Acta , vol.1790 , Issue.9 , pp. 863-868
    • Lennartsson, A.1    Ekwall, K.2
  • 47
    • 33845877732 scopus 로고    scopus 로고
    • Defining an epigenetic code
    • DOI 10.1038/ncb0107-2, PII NCB0107-2
    • B.M. Turner Defining an epigenetic code Nat. Cell Biol. 9 1 2007 2 6 10.1038/ncb0107-2 (Pubitemid 46024187)
    • (2007) Nature Cell Biology , vol.9 , Issue.1 , pp. 2-6
    • Turner, B.M.1
  • 48
    • 0036850325 scopus 로고    scopus 로고
    • Cellular memory and the histone code
    • DOI 10.1016/S0092-8674(02)01080-2
    • B.M. Turner Cellular memory and the histone code Cell 111 3 2002 285 291 (Pubitemid 35341385)
    • (2002) Cell , vol.111 , Issue.3 , pp. 285-291
    • Turner, B.M.1
  • 51
    • 15744396813 scopus 로고    scopus 로고
    • The key to development: Interpreting the histone code?
    • DOI 10.1016/j.gde.2005.01.005, Chromosomes and Expression Mechanisms
    • R. Margueron, P. Trojer, and D. Reinberg The key to development: interpreting the histone code? Curr. Opin. Genet. Dev. 15 2 2005 163 176 (Pubitemid 40416728)
    • (2005) Current Opinion in Genetics and Development , vol.15 , Issue.2 , pp. 163-176
    • Margueron, R.1    Trojer, P.2    Reinberg, D.3
  • 52
    • 77953621315 scopus 로고    scopus 로고
    • Innovation in gene regulation: The case of chromatin computation
    • S.J. Prohaska, P.F. Stadler, and D.C. Krakauer Innovation in gene regulation: the case of chromatin computation J. Theor. Biol. 265 1 2010 27 44
    • (2010) J. Theor. Biol. , vol.265 , Issue.1 , pp. 27-44
    • Prohaska, S.J.1    Stadler, P.F.2    Krakauer, D.C.3
  • 54
    • 33644841721 scopus 로고    scopus 로고
    • Protein linguistics - A grammar for modular protein assembly?
    • DOI 10.1038/nrm1785, PII N1785
    • M. Gimona Protein linguistics - a grammar for modular protein assembly? Nat. Rev. Mol. Cell Biol. 7 1 2006 68 73 (Pubitemid 43361574)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.1 , pp. 68-73
    • Gimona, M.1
  • 55
    • 58249086425 scopus 로고    scopus 로고
    • Understanding the words of chromatin regulation
    • J.I. Wu, J. Lessard, and G.R. Crabtree Understanding the words of chromatin regulation Cell 136 2 2009 200 206
    • (2009) Cell , vol.136 , Issue.2 , pp. 200-206
    • Wu, J.I.1    Lessard, J.2    Crabtree, G.R.3
  • 56
    • 0034079042 scopus 로고    scopus 로고
    • Biological information transfer beyond the genetic code: The sugar code
    • H.-J. Gabius Biological information transfer beyond the genetic code: the sugar code Naturwissenschaften 87 3 2000 108 121 (Pubitemid 30210616)
    • (2000) Naturwissenschaften , vol.87 , Issue.3 , pp. 108-121
    • Gabius, H.-J.1
  • 59
    • 77149173217 scopus 로고    scopus 로고
    • The biochemical basis and coding capacity of the sugar code
    • H.-J. Gabius, Wiley-VCH Weinheim
    • H. Rüdiger, and H.-J. Gabius The biochemical basis and coding capacity of the sugar code H.-J. Gabius, The Sugar Code: Fundamentals of Glycosciences 2009 Wiley-VCH Weinheim 3 13
    • (2009) The Sugar Code: Fundamentals of Glycosciences , pp. 3-13
    • Rüdiger, H.1    Gabius, H.-J.2
  • 60
    • 0001810168 scopus 로고    scopus 로고
    • The information-storing potential of the sugar code
    • H.-J. Gabius, S. Gabius, Chapman & Hall London
    • R. Laine The information-storing potential of the sugar code H.-J. Gabius, S. Gabius, Glycosciences: Status and Perspectives 1997 Chapman & Hall London 1 14
    • (1997) Glycosciences: Status and Perspectives , pp. 1-14
    • Laine, R.1
  • 64
    • 0024414280 scopus 로고
    • Lectins as cell recognition molecules
    • N. Sharon, and H. Lis Lectins as cell recognition molecules Science 246 4927 1989 227 234 (Pubitemid 19264635)
    • (1989) Science , vol.246 , Issue.4927 , pp. 227-234
    • Sharon, N.1    Lis, H.2
  • 65
    • 0028003496 scopus 로고
    • The arrival of the fittest: Toward a theory of biological organization
    • W. Fontana, and L. Buss The arrival of the fittest: toward a theory of biological organization Bull. Math. Biol. 56 1994 1 64
    • (1994) Bull. Math. Biol. , vol.56 , pp. 1-64
    • Fontana, W.1    Buss, L.2
  • 66
    • 42449120195 scopus 로고    scopus 로고
    • A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost
    • T. Tlusty A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost Phys. Biol. 5 1 2008 16001
    • (2008) Phys. Biol. , vol.5 , Issue.1 , pp. 16001
    • Tlusty, T.1
  • 67
    • 38749149160 scopus 로고    scopus 로고
    • Rate-distortion scenario for the emergence and evolution of noisy molecular codes
    • T. Tlusty Rate-distortion scenario for the emergence and evolution of noisy molecular codes Phys. Rev. Lett. 100 4 2008 048101
    • (2008) Phys. Rev. Lett. , vol.100 , Issue.4 , pp. 048101
    • Tlusty, T.1
  • 68
    • 79953164593 scopus 로고    scopus 로고
    • Introducing dynamics into the field of biosemiotics: A formal account with examples from language and immunology
    • J. De Beule, E. Hovig, and M. Benson Introducing dynamics into the field of biosemiotics: A formal account with examples from language and immunology Biosemiotics 4 1 2010 5 24
    • (2010) Biosemiotics , vol.4 , Issue.1 , pp. 5-24
    • De Beule, J.1    Hovig, E.2    Benson, M.3
  • 70
    • 0033098763 scopus 로고    scopus 로고
    • A detailed chemical kinetic model for high temperature ethanol oxidation
    • N.M. Marinov A detailed chemical kinetic model for high temperature ethanol oxidation Int. J. Chem. Kinet. 31 1999 183 220
    • (1999) Int. J. Chem. Kinet. , vol.31 , pp. 183-220
    • Marinov, N.M.1
  • 73
    • 0028505157 scopus 로고
    • A photochemical model of the martian athmosphere
    • H. Nair, M. Allen, A.D. Anbar, and Y.L. Yung A photochemical model of the martian athmosphere Icarus 111 1994 124 150
    • (1994) Icarus , vol.111 , pp. 124-150
    • Nair, H.1    Allen, M.2    Anbar, A.D.3    Yung, Y.L.4


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