Identifying molecular organic codes in reaction networks

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5777 LNAI, Issue PART 1, 2011, Pages 305-312

  Görlich, Dennis ^a   Dittrich, Peter ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DARWINIAN EVOLUTION; GENE REGULATORY NETWORKS; MOLECULAR LEVELS; MOLECULAR SPECIES; PROTEIN NETWORK; REACTION NETWORK; REACTION SYSTEM; STRONGLY CONNECTED; SUB-SYSTEMS;

FORMAL METHODS; GENES; MAPPING; MOLECULAR STRUCTURE; SEMANTICS;

NETWORK CODING;

EID: 79959988994     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-21283-3_38     Document Type: Conference Paper

References (21)

1. Küppers, B.O.: Information and the Origin of Life. MIT Press, Cambridge (1990)
2. Shannon, C.E.: A mathematical theory of communication. The Bell Systems Technical Journal 27, 379-423, 623-656 (1948) (reprinted with corrections)
3. Arndt, C.: Information Measures: Information and Its Description in Science and Engineering. Signals and Communication Technology, vol. 1. Springer, Berlin (2004)
4. Yockey, H.P.: Information Theory, Evolution, and the Origin of Life. Cambridge University Press, New York (2005)
5. Anderson, D.R.: Model Based Inference in the Life Sciences. Springer, Berlin (2008)
6. Barbieri, M. (ed.): Biosemiotics: Information, Codes and Signs in Living Systems. Nova Science Publisher, New York (2007)
7. Barbieri, M. (ed.): The Codes of Life: The Rules of Macroevolution, 1st edn. Biosemiotics, vol. 1. Springer, Netherlands (2008)
8. Favareau, D. (ed.): Essential Readings in Biosemiotics. Biosemiotics, vol. 3. Springer, Heidelberg (2009)
9. Barbieri, M.: The Organic Codes: An introduction to Semantic Biology. Cambridge University Press, Cambridge (2003)
10. Barbieri, M.: Biosemiotics: a new understanding of life. Naturwissenschaften 95(7), 577-599 (2008)
11. Faria, M.: Signal transduction codes and cell fate. In: Barbieri, M. (ed.) The Codes of Life: The Rules of Macroevolution, pp. 265-283. Springer, Dodrecht (2008)
12. Gabius, H., Andre, S., Kaltner, H., Siebert, H.: The sugar code: functional lectinomics. Biochimica et Biophysica Acta-General Subjects 1572(2-3), 165-177 (2002)
13. Turner, B.M.: Cellular memory and the histone code. Cell 111(3), 285-291 (2002)
14. Turner, B.M.: Defining an epigenetic code. Nat. Cell. Biol. 9(1), 2-6 (2007)
15. Fontana, W., Buss, L.W.: 'The arrival of the fittest': Toward a theory of biological organization. Bull. Math. Biol. 56, 1-64 (1994)
16. Speroni di Fenizio, P., Dittrich, P., Ziegler, J., Banzhaf, W.: Towards a theory of organizations. In: German Workshop on Artificial Life (GWAL 2000), Bayreuth, April 5-7 (2000)
17. Szathmáry, E.: Coding coenzyme handles: a hypothesis for the origin of the genetic code. Proc. Natl. Acad. Sci. USA 90(21), 9916-9920 (1993)
18. Yarus, M., Caporaso, J.G., Knight, R.: Origins of the genetic code: the escaped triplet theory. Annu. Rev. Biochem. 74, 179-198 (2005)
19. Koonin, E.V., Novozhilov, A.S.: Origin and evolution of the genetic code: the universal enigma. IUBMB Life 61(2), 99-111 (2009)
20. Adami, C., Ofria, C., Collier, T.C.: Evolution of biological complexity. Proc. Nat. Acad. Sci. USA 97, 4463-4468 (2000)
21. Dittrich, P., Speroni di Fenizio, P.: Chemical organization theory. Bull. Math. Biol. 69(4), 1199-1231 (2007)