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Volumn 4, Issue , 2011, Pages

The plausible reason why the length of 5' untranslated region is unrelated to organismal complexity

Author keywords

[No Author keywords available]

Indexed keywords

DROSOPHILA MELANOGASTER; HOMO SAPIENS; INVERTEBRATA; MAMMALIA; MUS MUSCULUS;

EID: 80052025744     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-4-312     Document Type: Article
Times cited : (17)

References (41)
  • 1
    • 0035907342 scopus 로고    scopus 로고
    • Can genes explain biological complexity?
    • DOI 10.1126/science.1060852
    • Molecular biology and evolution. Can genes explain biological complexity? Szathmary E, Jordan F, Pal C, Science 2001 292 5520 1315 1316 10.1126/science.1060852 11360989 (Pubitemid 32476208)
    • (2001) Science , vol.292 , Issue.5520 , pp. 1315-1316
    • Szathmary, E.1    Jordan, F.2    Pal, C.3
  • 2
    • 80053278126 scopus 로고    scopus 로고
    • Eukaryotic genome complexity
    • Eukaryotic genome complexity. Pray L, Nature Education 2008 1 1
    • (2008) Nature Education , vol.1 , Issue.1
    • Pray, L.1
  • 3
    • 21644451890 scopus 로고    scopus 로고
    • Why do humans have so few genes
    • DOI 10.1126/science.309.5731.80
    • Why do humans have so few genes? Pennisi E, Science 2005 309 5731 80 10.1126/science.309.5731.80 15994526 (Pubitemid 40934960)
    • (2005) Science , vol.309 , Issue.5731 , pp. 80
    • Pennisi, E.1
  • 4
    • 65649092633 scopus 로고    scopus 로고
    • The genetic signatures of noncoding RNAs
    • 10.1371/journal.pgen.1000459 19390609
    • The genetic signatures of noncoding RNAs. Mattick JS, PLoS Genet 2009 5 4 1000459 10.1371/journal.pgen.1000459 19390609
    • (2009) PLoS Genet , vol.5 , Issue.4 , pp. 51000459
    • Mattick, J.S.1
  • 5
    • 33847698971 scopus 로고    scopus 로고
    • The relationship between non-protein-coding DNA and eukaryotic complexity
    • DOI 10.1002/bies.20544
    • The relationship between non-protein-coding DNA and eukaryotic complexity. Taft RJ, Pheasant M, Mattick JS, Bioessays 2007 29 3 288 299 10.1002/bies.20544 17295292 (Pubitemid 46384167)
    • (2007) BioEssays , vol.29 , Issue.3 , pp. 288-299
    • Taft, R.J.1    Pheasant, M.2    Mattick, J.S.3
  • 6
    • 50649112170 scopus 로고    scopus 로고
    • Impacts of protein-protein interaction domains on organism and network complexity
    • 10.1101/gr.068130.107 18687879
    • Impacts of protein-protein interaction domains on organism and network complexity. Xia K, Fu Z, Hou L, Han JD, Genome Res 2008 18 9 1500 1508 10.1101/gr.068130.107 18687879
    • (2008) Genome Res , vol.18 , Issue.9 , pp. 1500-1508
    • Xia, K.1    Fu, Z.2    Hou, L.3    Han, J.D.4
  • 7
    • 36148951761 scopus 로고    scopus 로고
    • Organismal complexity, cell differentiation and gene expression: Human over mouse
    • DOI 10.1093/nar/gkm723
    • Organismal complexity, cell differentiation and gene expression: human over mouse. Vinogradov AE, Anatskaya OV, Nucleic Acids Res 2007 35 19 6350 6356 10.1093/nar/gkm723 17881362 (Pubitemid 350111606)
    • (2007) Nucleic Acids Research , vol.35 , Issue.19 , pp. 6350-6356
    • Vinogradov, A.E.1    Anatskaya, O.V.2
  • 8
    • 0242669945 scopus 로고    scopus 로고
    • Regulation of mRNA translation by 5′- and 3′-UTR-binding factors
    • DOI 10.1016/S0968-0004(03)00051-3
    • Regulation of mRNA translation by 5'- and 3'-UTR-binding factors. Wilkie GS, Dickson KS, Gray NK, Trends Biochem Sci 2003 28 4 182 188 10.1016/S0968-0004(03)00051-3 12713901 (Pubitemid 36507156)
    • (2003) Trends in Biochemical Sciences , vol.28 , Issue.4 , pp. 182-188
    • Wilkie, G.S.1    Dickson, K.S.2    Gray, N.K.3
  • 9
    • 60149091189 scopus 로고    scopus 로고
    • Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
    • 10.1016/j.cell.2009.01.042 19239892
    • Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Sonenberg N, Hinnebusch AG, Cell 2009 136 4 731 745 10.1016/j.cell.2009.01.042 19239892
    • (2009) Cell , vol.136 , Issue.4 , pp. 731-745
    • Sonenberg, N.1    Hinnebusch, A.G.2
  • 10
    • 75149196287 scopus 로고    scopus 로고
    • The mechanism of eukaryotic translation initiation and principles of its regulation
    • 10.1038/nrm2838 20094052
    • The mechanism of eukaryotic translation initiation and principles of its regulation. Jackson RJ, Hellen CU, Pestova TV, Nat Rev Mol Cell Biol 2010 11 2 113 127 10.1038/nrm2838 20094052
    • (2010) Nat Rev Mol Cell Biol , vol.11 , Issue.2 , pp. 113-127
    • Jackson, R.J.1    Hellen, C.U.2    Pestova, T.V.3
  • 11
    • 80053283631 scopus 로고    scopus 로고
    • Lengthening of 3'UTR increases morphological complexity in animal evolution
    • hdl:10101/npre.2010.4915.1
    • Lengthening of 3'UTR increases morphological complexity in animal evolution. Chen C, Chen S, Juan H, Huang H, Nature Precedings 2010 hdl:10101/npre.2010.4915.1
    • (2010) Nature Precedings
    • Chen, C.1    Chen, S.2    Juan, H.3    Huang, H.4
  • 12
    • 0036905397 scopus 로고    scopus 로고
    • What is complexity?
    • DOI 10.1002/bies.10192
    • What is complexity? Adami C, Bioessays 2002 24 12 1085 1094 10.1002/bies.10192 12447974 (Pubitemid 35464940)
    • (2002) BioEssays , vol.24 , Issue.12 , pp. 1085-1094
    • Adami, C.1
  • 13
    • 78149408021 scopus 로고    scopus 로고
    • Massive turnover of functional sequence in human and other mammalian genomes
    • Massive turnover of functional sequence in human and other mammalian genomes. Meader SJ, Ponting CP, Lunter G, Genome Res 2010
    • (2010) Genome Res
    • Meader, S.J.1    Ponting, C.P.2    Lunter, G.3
  • 14
    • 0035865250 scopus 로고    scopus 로고
    • Expressing the human genome
    • DOI 10.1038/35057011
    • Expressing the human genome. Tupler R, Perini G, Green MR, Nature 2001 409 6822 832 833 10.1038/35057011 11237001 (Pubitemid 32165335)
    • (2001) Nature , vol.409 , Issue.6822 , pp. 832-833
    • Tupler, R.1    Perini, G.2    Green, M.R.3
  • 15
    • 55249107194 scopus 로고    scopus 로고
    • Quantifying organismal complexity using a population genetic approach
    • 10.1371/journal.pone.0000217 17299597
    • Quantifying organismal complexity using a population genetic approach. Tenaillon O, Silander OK, Uzan JP, Chao L, PLoS ONE 2007 2 2 217 10.1371/journal.pone.0000217 17299597
    • (2007) PLoS ONE , vol.2 , Issue.2 , pp. 5217
    • Tenaillon, O.1    Silander, O.K.2    Uzan, J.P.3    Chao, L.4
  • 16
    • 33646909100 scopus 로고    scopus 로고
    • Protein family expansions and biological complexity
    • DOI 10.1371/journal.pcbi.0020048
    • Protein family expansions and biological complexity. Vogel C, Chothia C, PLoS Comput Biol 2006 2 5 48 10.1371/journal.pcbi.0020048 16733546 (Pubitemid 43794331)
    • (2006) PLoS Computational Biology , vol.2 , Issue.5 , pp. 370-382
    • Vogel, C.1    Chothia, C.2
  • 17
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method.
    • DOI 10.1086/284325
    • Phylogenies and the comparative method. Felsenstein J, Am Nat 1985 125 1 15 10.1086/284325 (Pubitemid 16276188)
    • (1985) American Naturalist , vol.125 , Issue.1 , pp. 1-15
    • Felsenstein, J.1
  • 22
    • 34249804498 scopus 로고    scopus 로고
    • Using FlyAtlas to identify better Drosophila melanogaster models of human disease
    • DOI 10.1038/ng2049, PII NG2049
    • Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Chintapalli VR, Wang J, Dow JA, Nat Genet 2007 39 6 715 720 10.1038/ng2049 17534367 (Pubitemid 46848596)
    • (2007) Nature Genetics , vol.39 , Issue.6 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.T.3
  • 23
    • 33646882591 scopus 로고    scopus 로고
    • Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution
    • DOI 10.1093/molbev/msj119
    • Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Liao BY, Zhang J, Mol Biol Evol 2006 23 6 1119 1128 10.1093/molbev/msj119 16520335 (Pubitemid 43781587)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.6 , pp. 1119-1128
    • Liao, B.-Y.1    Zhang, J.2
  • 24
    • 66149118241 scopus 로고    scopus 로고
    • Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
    • 10.1073/pnas.0810916106 19372376
    • Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Calvo SE, Pagliarini DJ, Mootha VK, Proc Natl Acad Sci USA 2009 106 18 7507 7512 10.1073/pnas.0810916106 19372376
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.18 , pp. 7507-7512
    • Calvo, S.E.1    Pagliarini, D.J.2    Mootha, V.K.3
  • 25
    • 61649096857 scopus 로고    scopus 로고
    • Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast
    • 10.1186/1471-2164-10-7 19128476
    • Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast. Lawless C, Pearson RD, Selley JN, Smirnova JB, Grant CM, Ashe MP, Pavitt GD, Hubbard SJ, BMC Genomics 2009 10 7 10.1186/1471-2164-10-7 19128476
    • (2009) BMC Genomics , vol.10 , pp. 7
    • Lawless, C.1    Pearson, R.D.2    Selley, J.N.3    Smirnova, J.B.4    Grant, C.M.5    Ashe, M.P.6    Pavitt, G.D.7    Hubbard, S.J.8
  • 26
    • 17044409660 scopus 로고    scopus 로고
    • UAUG and uORFs in human and rodent 5'untranslated mRNAs
    • 15777708
    • uAUG and uORFs in human and rodent 5'untranslated mRNAs. Iacono M, Mignone F, Pesole G, Gene 2005 349 97 105 15777708
    • (2005) Gene , vol.349 , pp. 97-105
    • Iacono, M.1    Mignone, F.2    Pesole, G.3
  • 27
    • 16344362654 scopus 로고    scopus 로고
    • The evolution of transcription-initiation sites
    • DOI 10.1093/molbev/msi100
    • The evolution of transcription-initiation sites. Lynch M, Scofield DG, Hong X, Mol Biol Evol 2005 22 4 1137 1146 10.1093/molbev/msi100 15689525 (Pubitemid 40471426)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.4 , pp. 1137-1146
    • Lynch, M.1    Scofield, D.G.2    Hong, X.3
  • 28
    • 50949106150 scopus 로고    scopus 로고
    • A test of the null model for 5' UTR evolution based on GC content
    • 10.1093/molbev/msn044 18296414
    • A test of the null model for 5' UTR evolution based on GC content. Reuter M, Engelstadter J, Fontanillas P, Hurst LD, Mol Biol Evol 2008 25 5 801 804 10.1093/molbev/msn044 18296414
    • (2008) Mol Biol Evol , vol.25 , Issue.5 , pp. 801-804
    • Reuter, M.1    Engelstadter, J.2    Fontanillas, P.3    Hurst, L.D.4
  • 30
    • 78751474118 scopus 로고    scopus 로고
    • Non-coding RNAs as regulators of embryogenesis
    • 10.1038/nrg2904 21245830
    • Non-coding RNAs as regulators of embryogenesis. Pauli A, Rinn JL, Schier AF, Nat Rev Genet 2011 12 2 136 149 10.1038/nrg2904 21245830
    • (2011) Nat Rev Genet , vol.12 , Issue.2 , pp. 136-149
    • Pauli, A.1    Rinn, J.L.2    Schier, A.F.3
  • 31
    • 77949875682 scopus 로고    scopus 로고
    • MicroRNA control of signal transduction
    • 20216554
    • MicroRNA control of signal transduction. Inui M, Martello G, Piccolo S, Nat Rev Mol Cell Biol 2010 11 4 252 263 20216554
    • (2010) Nat Rev Mol Cell Biol , vol.11 , Issue.4 , pp. 252-263
    • Inui, M.1    Martello, G.2    Piccolo, S.3
  • 32
    • 40649111338 scopus 로고    scopus 로고
    • Non-coding RNAs, epigenetics and complexity
    • 10.1016/j.gene.2007.12.008 18226475
    • Non-coding RNAs, epigenetics and complexity. Costa FF, Gene 2008 410 1 9 17 10.1016/j.gene.2007.12.008 18226475
    • (2008) Gene , vol.410 , Issue.1 , pp. 9-17
    • Costa, F.F.1
  • 33
    • 49949105213 scopus 로고    scopus 로고
    • The multiple lives of NMD factors: Balancing roles in gene and genome regulation
    • 10.1038/nrg2402 18679436
    • The multiple lives of NMD factors: balancing roles in gene and genome regulation. Isken O, Maquat LE, Nat Rev Genet 2008 9 9 699 712 10.1038/nrg2402 18679436
    • (2008) Nat Rev Genet , vol.9 , Issue.9 , pp. 699-712
    • Isken, O.1    Maquat, L.E.2
  • 34
    • 76749115251 scopus 로고    scopus 로고
    • Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity
    • 10.1186/1471-2164-11-S1-S4 21210970
    • Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity. Kanapin AA, Mulder N, Kuznetsov VA, BMC Genomics 2010 11 Suppl 1 4 10.1186/1471-2164-11-S1- S4 21210970
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 1 , pp. 194
    • Kanapin, A.A.1    Mulder, N.2    Kuznetsov, V.A.3
  • 37
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • DOI 10.1126/science.1158441
    • The transcriptional landscape of the yeast genome defined by RNA sequencing. Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M, Science 2008 320 5881 1344 1349 10.1126/science.1158441 18451266 (Pubitemid 351929471)
    • (2008) Science , vol.320 , Issue.5881 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 39
    • 0035931911 scopus 로고    scopus 로고
    • Chance and necessity: The evolution of morphological complexity and diversity
    • DOI 10.1038/35059227
    • Chance and necessity: the evolution of morphological complexity and diversity. Carroll SB, Nature 2001 409 6823 1102 1109 10.1038/35059227 11234024 (Pubitemid 32204066)
    • (2001) Nature , vol.409 , Issue.6823 , pp. 1102-1109
    • Carroll, S.B.1
  • 40
    • 73649118486 scopus 로고    scopus 로고
    • Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes
    • 10.1371/journal.pgen.1000731 19936020
    • Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. Vibranovski MD, Lopes HF, Karr TL, Long M, PLoS Genet 2009 5 11 1000731 10.1371/journal.pgen.1000731 19936020
    • (2009) PLoS Genet , vol.5 , Issue.11 , pp. 51000731
    • Vibranovski, M.D.1    Lopes, H.F.2    Karr, T.L.3    Long, M.4
  • 41
    • 0037121050 scopus 로고    scopus 로고
    • Pushing the limits of the scanning mechanism for initiation of translation
    • DOI 10.1016/S0378-1119(02)01056-9, PII S0378111902010569
    • Pushing the limits of the scanning mechanism for initiation of translation. Kozak M, Gene 2002 299 1-2 1 34 10.1016/S0378-1119(02)01056-9 12459250 (Pubitemid 35379825)
    • (2002) Gene , vol.299 , Issue.1-2 , pp. 1-34
    • Kozak, M.1


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