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Volumn 108, Issue 32, 2011, Pages 13347-13352

Network-based prediction for sources of transcriptional dysregulation using latent pathway identification analysis

Author keywords

Centrality; Microarray; Pathway network

Indexed keywords

EPIDERMAL GROWTH FACTOR RECEPTOR; GELDANAMYCIN; HEAT SHOCK PROTEIN 90; MITOGEN ACTIVATED PROTEIN KINASE 1; T CELL FACTOR PROTEIN; TRANSFORMING GROWTH FACTOR BETA; WNT1 PROTEIN;

EID: 80051978793     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1100891108     Document Type: Article
Times cited : (34)

References (41)
  • 2
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker T., Ozier O., Schwikowski B., Siegel A.F. (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18(Suppl 1):S233-S240. (Pubitemid 41185658)
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 3
    • 34347326247 scopus 로고    scopus 로고
    • Network-based analysis of affected biological processes in type 2 diabetes models
    • Liu M., et al. (2007) Network-based analysis of affected biological processes in type 2 diabetes models. PLoS Genet 3:e96.
    • (2007) PLoS Genet , vol.3
    • Liu, M.1
  • 4
    • 66449120271 scopus 로고    scopus 로고
    • Exploring the human genome with functional maps
    • Huttenhower C., et al. (2009) Exploring the human genome with functional maps. Genome Res 19:1093-1106.
    • (2009) Genome Res , vol.19 , pp. 1093-1106
    • Huttenhower, C.1
  • 5
    • 55449131589 scopus 로고    scopus 로고
    • Probabilistic protein function prediction from heterogeneous genome-wide data
    • Nariai N., Kolaczyk E.D., Kasif S. (2007) Probabilistic protein function prediction from heterogeneous genome-wide data. PLoS ONE 2:e337.
    • (2007) PLoS ONE , vol.2
    • Nariai, N.1    Kolaczyk, E.D.2    Kasif, S.3
  • 6
    • 49549125943 scopus 로고    scopus 로고
    • Sparse statistical modelling in gene expression genomics
    • eds Do KA, Muller P, Vannucci M (Cambridge Univ Press, Cambridge, UK)
    • Lucas J., et al. (2006) Sparse statistical modelling in gene expression genomics. Bayesian Inference for Gene Expression and Proteomics, eds Do KA, Muller P, Vannucci M (Cambridge Univ Press, Cambridge, UK), pp 155-176.
    • (2006) Bayesian Inference for Gene Expression and Proteomics , pp. 155-176
    • Lucas, J.1
  • 7
    • 4043181214 scopus 로고    scopus 로고
    • Cancer genes and the pathways they control
    • DOI 10.1038/nm1087
    • Vogelstein B., Kinzler K.W. (2004) Cancer genes and the pathways they control. Nat Med 10:789-799. (Pubitemid 39070849)
    • (2004) Nature Medicine , vol.10 , Issue.8 , pp. 789-799
    • Vogelstein, B.1    Kinzler, K.W.2
  • 8
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: New developments in KEGG
    • Kanehisa M., et al. (2006) From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res 34(Database issue):D354-D357.
    • (2006) Nucleic Acids Res , vol.34 , Issue.DATABASE ISSUE
    • Kanehisa, M.1
  • 9
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa M., Goto S. (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27-30. (Pubitemid 30047706)
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 10
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • Ashburner M. (2000) Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium Nat Genet 25:25-29.
    • (2000) The Gene Ontology Consortium Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 12
    • 23944456470 scopus 로고    scopus 로고
    • Wnt signalling and prostate cancer
    • DOI 10.1038/sj.pcan.4500794, PII 4500794
    • Yardy G.W., Brewster S.F. (2005) Wnt signalling and prostate cancer. Prostate Cancer Prostatic Dis 8:119-126. (Pubitemid 43118074)
    • (2005) Prostate Cancer and Prostatic Diseases , vol.8 , Issue.2 , pp. 119-126
    • Yardy, G.W.1    Brewster, S.F.2
  • 13
    • 0037350122 scopus 로고    scopus 로고
    • Androgen-independent prostate cancer: Potential role of androgen and ErbB receptor signal transduction crosstalk
    • El Sheikh S.S., Domin J., Abel P., Stamp G., Lalani N. (2003) Androgen-independent prostate cancer: Potential role of androgen and ErbB receptor signal transduction crosstalk. Neoplasia 5:99-109. (Pubitemid 36369005)
    • (2003) Neoplasia , vol.5 , Issue.2 , pp. 99-109
    • El, S.S.S.1    Domin, J.2    Abel, P.3    Stamp, G.4    Lalani, E.-N.5
  • 14
    • 33748460152 scopus 로고    scopus 로고
    • Epidermal growth factor receptor (ErbBI) expression in prostate cancer progression: Correlation with androgen independence
    • DOI 10.1002/pros.20460
    • Shah R.B., Ghosh D., Elder J.T. (2006) Epidermal growth factor receptor (ErbB1) expression in prostate cancer progression: Correlation with androgen independence. Prostate 66:1437-1444. (Pubitemid 44350369)
    • (2006) Prostate , vol.66 , Issue.13 , pp. 1437-1444
    • Shah, R.B.1    Ghosh, D.2    Elder, J.T.3
  • 15
    • 0035496220 scopus 로고    scopus 로고
    • The development of androgen-independent prostate cancer
    • Feldman B.J., Feldman D. (2001) The development of androgen-independent prostate cancer. Nat Rev Cancer 1:34-45. (Pubitemid 33741879)
    • (2001) Nature Reviews Cancer , vol.1 , Issue.1 , pp. 34-45
    • Feldman, B.J.1    Feldman, D.2
  • 16
    • 0033555967 scopus 로고    scopus 로고
    • Activation of mitogen-activated protein kinase associated with prostate cancer progression
    • Gioeli D., Mandell J.W., Petroni G.R., Frierson H.F., Jr., Weber M.J. (1999) Activation of mitogen-activated protein kinase associated with prostate cancer progression. Cancer Res 59:279-284. (Pubitemid 29048852)
    • (1999) Cancer Research , vol.59 , Issue.2 , pp. 279-284
    • Gioeli, D.1    Mandell, J.W.2    Petroni, G.R.3    Frierson Jr., H.F.4    Weber, M.J.5
  • 17
    • 33745515023 scopus 로고    scopus 로고
    • Tumour microenvironment - TGFbeta: The molecular Jekyll and Hyde of cancer
    • DOI 10.1038/nrc1926, PII N1926
    • Bierie B., Moses H.L. (2006) Tumour microenvironment: TGFbeta: TGFbetaThe molecular Jekyll and Hyde of cancer. Nat Rev Cancer 6:506-520. (Pubitemid 43980540)
    • (2006) Nature Reviews Cancer , vol.6 , Issue.7 , pp. 506-520
    • Bierie, B.1    Moses, H.L.2
  • 19
    • 37449009461 scopus 로고    scopus 로고
    • Overexpression of E-cadherin and beta-catenin proteins in metastatic prostate cancer cells in bone
    • Saha B., et al. (2008) Overexpression of E-cadherin and beta-catenin proteins in metastatic prostate cancer cells in bone. Prostate 68:78-84.
    • (2008) Prostate , vol.68 , pp. 78-84
    • Saha, B.1
  • 21
    • 63249115113 scopus 로고    scopus 로고
    • Loss of tight junction barrier function and its role in cancer metastasis
    • Martin T.A., Jiang W.G. (2009) Loss of tight junction barrier function and its role in cancer metastasis. Biochim Biophys Acta 1788:872-891.
    • (2009) Biochim Biophys Acta , vol.1788 , pp. 872-891
    • Martin, T.A.1    Jiang, W.G.2
  • 22
    • 77950203804 scopus 로고    scopus 로고
    • Talin1 promotes tumor invasion and metastasis via focal adhesion signaling and anoikis resistance
    • Sakamoto S., McCann R.O., Dhir R., Kyprianou N. (2010) Talin1 promotes tumor invasion and metastasis via focal adhesion signaling and anoikis resistance. Cancer Res 70:1885-1895.
    • (2010) Cancer Res , vol.70 , pp. 1885-1895
    • Sakamoto, S.1    McCann, R.O.2    Dhir, R.3    Kyprianou, N.4
  • 23
    • 0033866215 scopus 로고    scopus 로고
    • Cell adhesion and chemotaxis in prostate cancer metastasis to bone: A minireview
    • Cooper C.R., Pienta K.J. (2000) Cell adhesion and chemotaxis in prostate cancer metastasis to bone: A minireview. Prostate Cancer Prostatic Dis 3:6-12. (Pubitemid 30616513)
    • (2000) Prostate Cancer and Prostatic Diseases , vol.3 , Issue.1 , pp. 6-12
    • Cooper, C.R.1    Pienta, K.J.2
  • 25
    • 0034163461 scopus 로고    scopus 로고
    • Inhibition of constitutively activated Stat3 signaling pathway suppresses growth of prostate cancer cells
    • Ni Z., Lou W., Leman E.S., Gao A.C. (2000) Inhibition of constitutively activated Stat3 signaling pathway suppresses growth of prostate cancer cells. Cancer Res 60:1225-1228. (Pubitemid 30151988)
    • (2000) Cancer Research , vol.60 , Issue.5 , pp. 1225-1228
    • Ni, Z.1    Lou, W.2    Leman, E.S.3    Gao, A.C.4
  • 26
    • 0033502429 scopus 로고    scopus 로고
    • Geldanamycin as a potential anti-cancer agent: Its molecular target and biochemical activity
    • DOI 10.1023/A:1006382320697
    • Neckers L., Schulte T.W., Mimnaugh E. (1999) Geldanamycin as a potential anti-cancer agent: Its molecular target and biochemical activity. Invest New Drugs 17:361-373. (Pubitemid 30135903)
    • (1999) Investigational New Drugs , vol.17 , Issue.4 , pp. 361-373
    • Neckers, L.1    Schulte, T.W.2    Mimnaugh, E.3
  • 28
    • 25844519550 scopus 로고    scopus 로고
    • HSP90 and the chaperoning of cancer
    • DOI 10.1038/nrc1716
    • Whitesell L., Lindquist S.L. (2005) HSP90 and the chaperoning of cancer. Nat Rev Cancer 5:761-772. (Pubitemid 41400776)
    • (2005) Nature Reviews Cancer , vol.5 , Issue.10 , pp. 761-772
    • Whitesell, L.1    Lindquist, S.L.2
  • 29
    • 0029664590 scopus 로고    scopus 로고
    • Cell-cycle arrests and p53 accumulation induced by geldanamycin in human ovarian tumour cells
    • DOI 10.1007/s002800050407
    • McIlwrath A.J., Brunton V.G., Brown R. (1996) Cell-cycle arrest and p53 accumulation induced by geldanamycin in human ovarian tumour cells. Cancer Chemother Pharmacol 37:423-428. (Pubitemid 26054550)
    • (1996) Cancer Chemotherapy and Pharmacology , vol.37 , Issue.5 , pp. 423-428
    • McIlwrath, A.J.1    Brunton, V.G.2    Brown, R.3
  • 30
    • 0032705608 scopus 로고    scopus 로고
    • Geldanamycin induces cell cycle arrest in K562 erythroleukemic cells
    • Kim H.R., Lee C.H., Choi Y.H., Kang H.S., Kim H.D. (1999) Geldanamycin induces cell cycle arrest in K562 erythroleukemic cells. IUBMB Life 48:425-428.
    • (1999) IUBMB Life , vol.48 , pp. 425-428
    • Kim, H.R.1    Lee, C.H.2    Choi, Y.H.3    Kang, H.S.4    Kim, H.D.5
  • 31
    • 80051974053 scopus 로고    scopus 로고
    • Nrdp1 and ErbB3 expression in nonsmall cell lung cancer lines.: C7-05
    • Proffered Paper Abstracts: C7-05. Proffered Paper AbstractsSession C7: C7-05. Proffered Paper AbstractsSession C7Tumor and Cell Biology C7-05
    • Plate J.M., Iyengar R.M., Sutton P., Bonomi P. (2007) Nrdp1 and ErbB3 expression in nonsmall cell lung cancer lines.: C7-05. Proffered Paper Abstracts: C7-05. Proffered Paper AbstractsSession C7: C7-05. Proffered Paper AbstractsSession C7Tumor and Cell Biology C7-05. J Thorac Oncol 2:S381.
    • (2007) J Thorac Oncol , vol.2
    • Plate, J.M.1    Iyengar, R.M.2    Sutton, P.3    Bonomi, P.4
  • 32
    • 58149193222 scopus 로고    scopus 로고
    • Human protein reference database - 2009 Update
    • Keshava Prasad T.S., et al. (2009) Human protein reference database - 2009 update. Nucleic Acids Res 37(Database issue):D767-D772.
    • (2009) Nucleic Acids Res , vol.37 , Issue.DATABASE ISSUE
    • Keshava Prasad, T.S.1
  • 33
    • 77958195688 scopus 로고    scopus 로고
    • Integration of microRNA changes in vivo identifies novel molecular features of muscle insulin resistance in type 2 diabetes
    • Gallagher I.J., et al. (2010) Integration of microRNA changes in vivo identifies novel molecular features of muscle insulin resistance in type 2 diabetes. Genome Med 2:9.
    • (2010) Genome Med , vol.2 , pp. 9
    • Gallagher, I.J.1
  • 35
    • 34247637323 scopus 로고    scopus 로고
    • Genes involved in oxidative phosphorylation are coordinately upregulated with fasting hyperglycaemia in livers of patients with type 2 diabetes
    • Misu H., et al. (2007) Genes involved in oxidative phosphorylation are coordinately upregulated with fasting hyperglycaemia in livers of patients with type 2 diabetes. Diabetologia 50:268-277.
    • (2007) Diabetologia , vol.50 , pp. 268-277
    • Misu, H.1
  • 36
    • 0017657188 scopus 로고
    • Enzyme activities in quadriceps femoris muscle of obese diabetic male patients
    • DOI 10.1007/BF01234508
    • Vondra K., et al. (1977) Enzyme activities in quadriceps femoris muscle of obese diabetic male patients. Diabetologia 13:527-529. (Pubitemid 8206741)
    • (1977) Diabetologia , vol.13 , Issue.5 , pp. 527-529
    • Vondra, K.1    Rath, R.2    Bass, A.3
  • 37
    • 1642377274 scopus 로고    scopus 로고
    • Impaired Mitochondrial Activity in the Insulin-Resistant Offspring of Patients with Type 2 Diabetes
    • DOI 10.1056/NEJMoa031314
    • Petersen K.F., Dufour S., Befroy D., Garcia R., Shulman G.I. (2004) Impaired mitochondrial activity in the insulin-resistant offspring of patients with type 2 diabetes. N Engl J Med 350:664-671. (Pubitemid 38364625)
    • (2004) New England Journal of Medicine , vol.350 , Issue.7 , pp. 664-671
    • Petersen, K.F.1    Dufour, S.2    Befroy, D.3    Garcia, R.4    Shulman, G.I.5
  • 38
    • 58149316376 scopus 로고    scopus 로고
    • Obesity upregulates genes involved in oxidative phosphorylation in livers of diabetic patients
    • Takamura T., et al. (2008) Obesity upregulates genes involved in oxidative phosphorylation in livers of diabetic patients. Obesity 16:2601-2609.
    • (2008) Obesity , vol.16 , pp. 2601-2609
    • Takamura, T.1
  • 39
    • 67650070045 scopus 로고    scopus 로고
    • Multi-parameter phenotypic profiling: Using cellular effects to characterize small-molecule compounds
    • Feng Y., Mitchison T.J., Bender A., Young D.W., Tallarico J.A. (2009) Multi-parameter phenotypic profiling: Using cellular effects to characterize small-molecule compounds. Nat Rev Drug Discov 8:567-578.
    • (2009) Nat Rev Drug Discov , vol.8 , pp. 567-578
    • Feng, Y.1    Mitchison, T.J.2    Bender, A.3    Young, D.W.4    Tallarico, J.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.