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Volumn 48, Issue 15-16, 2011, Pages 1844-1850

Electrostatic exploration of the C3d-FH4 interaction using a computational alanine scan

Author keywords

Association free energy; C3d; Complement system; Computational alanine scan; Electrostatic clustering; Electrostatics; Factor H

Indexed keywords

ALANINE; AMINO ACID; BACTERIAL PROTEIN; BINDING PROTEIN; COMPLEMENT COMPONENT C3D; COMPLEMENT FACTOR H; EXTRACELLULAR FIBRINOGEN BINDING PROTEIN; UNCLASSIFIED DRUG;

EID: 80051919934     PISSN: 01615890     EISSN: 18729142     Source Type: Journal    
DOI: 10.1016/j.molimm.2011.05.007     Document Type: Article
Times cited : (10)

References (31)
  • 2
    • 2442670537 scopus 로고    scopus 로고
    • The complement system in B cell regulation
    • Carroll M.C. The complement system in B cell regulation. Molecular Immunology 2004, 41:141-146.
    • (2004) Molecular Immunology , vol.41 , pp. 141-146
    • Carroll, M.C.1
  • 3
    • 77952065821 scopus 로고    scopus 로고
    • Solvation effects in calculated electrostatic association free energies for the C3d-CR2 complex and comparison with experimental data
    • Cheung A.S., Kieslich C.A., Yang J.F., Morikis D. Solvation effects in calculated electrostatic association free energies for the C3d-CR2 complex and comparison with experimental data. Biopolymers 2010, 93:509-519.
    • (2010) Biopolymers , vol.93 , pp. 509-519
    • Cheung, A.S.1    Kieslich, C.A.2    Yang, J.F.3    Morikis, D.4
  • 4
    • 36849084660 scopus 로고    scopus 로고
    • Translational mini-review series on complement factor H: Genetics and disease associations of human complement factor H
    • de Cordoba S.R., de Jorge E.G. Translational mini-review series on complement factor H: Genetics and disease associations of human complement factor H. Clinical and Experimental Immunology 2008, 151:1-13.
    • (2008) Clinical and Experimental Immunology , vol.151 , pp. 1-13
    • de Cordoba, S.R.1    de Jorge, E.G.2
  • 5
    • 3242886771 scopus 로고    scopus 로고
    • PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
    • Dolinsky T.J., Nielsen J.E., McCammon J.A., Baker N.A. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Research 2004, 32:W665-W667.
    • (2004) Nucleic Acids Research , vol.32
    • Dolinsky, T.J.1    Nielsen, J.E.2    McCammon, J.A.3    Baker, N.A.4
  • 6
    • 33751103471 scopus 로고    scopus 로고
    • Age-related macular degeneration-emerging pathogenetic and therapeutic concepts
    • Gehrs K.M., Anderson D.H., Johnson L.V., Hageman G.S. Age-related macular degeneration-emerging pathogenetic and therapeutic concepts. Annals of Medicine 2006, 38:450-471.
    • (2006) Annals of Medicine , vol.38 , pp. 450-471
    • Gehrs, K.M.1    Anderson, D.H.2    Johnson, L.V.3    Hageman, G.S.4
  • 8
    • 79954421528 scopus 로고    scopus 로고
    • Electrostatic clustering and free energy calculations provide a foundation for protein design and optimization
    • Gorham R., Kieslich C., Morikis D. Electrostatic clustering and free energy calculations provide a foundation for protein design and optimization. Annals of Biomedical Engineering 2011, 39:1252-1263.
    • (2011) Annals of Biomedical Engineering , vol.39 , pp. 1252-1263
    • Gorham, R.1    Kieslich, C.2    Morikis, D.3
  • 11
    • 0037114145 scopus 로고    scopus 로고
    • Complement C3b/C3d and cell surface polyanions are recognized by overlapping binding sites on the most carboxyl-terminal domain of complement factor H
    • Hellwage J., Jokiranta T.S., Friese M.A., Wolk T.U., Kampen E., Zipfel P.F., Meri S. Complement C3b/C3d and cell surface polyanions are recognized by overlapping binding sites on the most carboxyl-terminal domain of complement factor H. Journal of Immunology 2002, 169:6935-6944.
    • (2002) Journal of Immunology , vol.169 , pp. 6935-6944
    • Hellwage, J.1    Jokiranta, T.S.2    Friese, M.A.3    Wolk, T.U.4    Kampen, E.5    Zipfel, P.F.6    Meri, S.7
  • 12
    • 47249120139 scopus 로고    scopus 로고
    • The spectrum of complement alternative pathway-mediated diseases
    • Holers V.M. The spectrum of complement alternative pathway-mediated diseases. Immunological Reviews 2008, 223:300-316.
    • (2008) Immunological Reviews , vol.223 , pp. 300-316
    • Holers, V.M.1
  • 13
    • 0029016182 scopus 로고
    • Classical electrostatics in biology and chemistry
    • Honig B., Nicholls A. Classical electrostatics in biology and chemistry. Science 1995, 268:1144-1149.
    • (1995) Science , vol.268 , pp. 1144-1149
    • Honig, B.1    Nicholls, A.2
  • 14
    • 77949893578 scopus 로고    scopus 로고
    • Mutational analyses reveal that the staphylococcal immune evasion molecule Sbi and complement receptor 2 (CR2) share overlapping contact residues on C3d: implications for the controversy regarding the CR2/C3d cocrystal structure
    • Isenman D.E., Leung E., Mackay J.D., Bagby S., van den Elsen J.M.H. Mutational analyses reveal that the staphylococcal immune evasion molecule Sbi and complement receptor 2 (CR2) share overlapping contact residues on C3d: implications for the controversy regarding the CR2/C3d cocrystal structure. Journal of Immunology 2010, 184:1946-1955.
    • (2010) Journal of Immunology , vol.184 , pp. 1946-1955
    • Isenman, D.E.1    Leung, E.2    Mackay, J.D.3    Bagby, S.4    van den Elsen, J.M.H.5
  • 17
    • 79953846050 scopus 로고    scopus 로고
    • Automated computational framework for the analysis of electrostatic similarities of proteins
    • Kieslich C., Yang J., Gunopulos D., Morikis D. Automated computational framework for the analysis of electrostatic similarities of proteins. Biotechnology Progress 2011, 27:316-325.
    • (2011) Biotechnology Progress , vol.27 , pp. 316-325
    • Kieslich, C.1    Yang, J.2    Gunopulos, D.3    Morikis, D.4
  • 18
    • 78751566641 scopus 로고    scopus 로고
    • Is the rigid-body assumption reasonable? Insights into the effects of dynamics on the electrostatic analysis of barnase-barstar
    • Kieslich C., Gorham R., Morikis D. Is the rigid-body assumption reasonable? Insights into the effects of dynamics on the electrostatic analysis of barnase-barstar. Journal of Non-Crystalline Solids 2011, 357:707-716.
    • (2011) Journal of Non-Crystalline Solids , vol.357 , pp. 707-716
    • Kieslich, C.1    Gorham, R.2    Morikis, D.3
  • 21
    • 77949905425 scopus 로고    scopus 로고
    • Influence of electrostatics on the complement regulatory functions of Kaposica, the complement inhibitor of Kaposi's sarcoma-associated herpesvirus
    • Pyaram K., Kieslich C.A., Yadav V.N., Morikis D., Sahu A. Influence of electrostatics on the complement regulatory functions of Kaposica, the complement inhibitor of Kaposi's sarcoma-associated herpesvirus. Journal of Immunology 2010, 184:1956-1967.
    • (2010) Journal of Immunology , vol.184 , pp. 1956-1967
    • Pyaram, K.1    Kieslich, C.A.2    Yadav, V.N.3    Morikis, D.4    Sahu, A.5
  • 23
    • 13544260859 scopus 로고    scopus 로고
    • Electrostatic modeling predicts the activities of orthopoxvirus complement control proteins
    • Sfyroera G., Katragadda M., Morikis D., Isaacs S.N., Lambris J.D. Electrostatic modeling predicts the activities of orthopoxvirus complement control proteins. Journal of Immunology 2005, 174:2143-2151.
    • (2005) Journal of Immunology , vol.174 , pp. 2143-2151
    • Sfyroera, G.1    Katragadda, M.2    Morikis, D.3    Isaacs, S.N.4    Lambris, J.D.5
  • 24
    • 32844457567 scopus 로고
    • Accurate calculation of hydration free energies using macroscopic solvent models
    • Sitkoff D., Sharp K.A., Honig B. Accurate calculation of hydration free energies using macroscopic solvent models. Journal of Physical Chemistry 1994, 98:1978-1988.
    • (1994) Journal of Physical Chemistry , vol.98 , pp. 1978-1988
    • Sitkoff, D.1    Sharp, K.A.2    Honig, B.3
  • 25
  • 26
    • 0031688491 scopus 로고    scopus 로고
    • Complement receptor 2 in the regulation of the immune response
    • Tolnay M., Tsokos G.C. Complement receptor 2 in the regulation of the immune response. Clinical Immunology and Immunopathology 1998, 88:123-132.
    • (1998) Clinical Immunology and Immunopathology , vol.88 , pp. 123-132
    • Tolnay, M.1    Tsokos, G.C.2
  • 27
    • 0035810399 scopus 로고    scopus 로고
    • Advances in immunology: complement (First of two parts)
    • Walport M.J. Advances in immunology: complement (First of two parts). New England Journal of Medicine 2001, 344:1058-1066.
    • (2001) New England Journal of Medicine , vol.344 , pp. 1058-1066
    • Walport, M.J.1
  • 28
    • 67649230210 scopus 로고    scopus 로고
    • Structure of complement fragment C3b-factor H and implications for host protection by complement regulators
    • Wu J., Wu Y.Q., Ricklin D., Janssen B.J.C., Lambris J.D., Gros P. Structure of complement fragment C3b-factor H and implications for host protection by complement regulators. Nature Immunology 2009, 10:728-779.
    • (2009) Nature Immunology , vol.10 , pp. 728-779
    • Wu, J.1    Wu, Y.Q.2    Ricklin, D.3    Janssen, B.J.C.4    Lambris, J.D.5    Gros, P.6
  • 29
    • 34247617750 scopus 로고    scopus 로고
    • Immunophysical exploration of C3d-CR2(CCP1-2) interaction using molecular dynamics and electrostatics
    • Zhang L., Mallik B., Morikis D. Immunophysical exploration of C3d-CR2(CCP1-2) interaction using molecular dynamics and electrostatics. Journal of Molecular Biology 2007, 369:567-583.
    • (2007) Journal of Molecular Biology , vol.369 , pp. 567-583
    • Zhang, L.1    Mallik, B.2    Morikis, D.3
  • 30
    • 33646128732 scopus 로고    scopus 로고
    • Immunophysical properties and prediction of activities for vaccinia virus complement control protein and smallpox inhibitor of complement enzymes using molecular dynamics and electrostatics
    • Zhang L., Morikis D. Immunophysical properties and prediction of activities for vaccinia virus complement control protein and smallpox inhibitor of complement enzymes using molecular dynamics and electrostatics. Biophysical Journal 2006, 90:3106-3119.
    • (2006) Biophysical Journal , vol.90 , pp. 3106-3119
    • Zhang, L.1    Morikis, D.2
  • 31
    • 70349437186 scopus 로고    scopus 로고
    • Complement regulators and inhibitory proteins
    • Zipfel P.F., Skerka C. Complement regulators and inhibitory proteins. Nature Reviews Immunology 2009, 9:729-740.
    • (2009) Nature Reviews Immunology , vol.9 , pp. 729-740
    • Zipfel, P.F.1    Skerka, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.