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Volumn 14, Issue 4, 2011, Pages 497-503

Advances in understanding archaea-virus interactions in controlled and natural environments

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL VIRUS; HALOARCULA; HIGH TEMPERATURE; METAGENOMICS; NONHUMAN; REVIEW; SULFOLOBUS; VIRUS CELL INTERACTION; VIRUS CULTURE;

EID: 80051791502     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2011.07.007     Document Type: Review
Times cited : (9)

References (60)
  • 2
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese C.R., Kandler O., Wheelis M.L. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A 1990, 87:4576-4579.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 3
    • 77953553271 scopus 로고    scopus 로고
    • Population ecology of nitrifying archaea and bacteria in the Southern California Bight
    • Beman J.M., Sachdeva R., Fuhrman J.A. Population ecology of nitrifying archaea and bacteria in the Southern California Bight. Environ Microbiol 2010, 12:1282-1292.
    • (2010) Environ Microbiol , vol.12 , pp. 1282-1292
    • Beman, J.M.1    Sachdeva, R.2    Fuhrman, J.A.3
  • 4
    • 67650819011 scopus 로고    scopus 로고
    • A hypersaline microbial mat from the Pacific Atoll Kiritimati: insights into composition and carbon fixation using biomarker analyses and a 13C-labeling approach
    • Buhring S.I., Smittenberg R.H., Sachse D., Lipp J.S., Golubic S., Sachs J.P., Hinrichs K.U., Summons R.E. A hypersaline microbial mat from the Pacific Atoll Kiritimati: insights into composition and carbon fixation using biomarker analyses and a 13C-labeling approach. Geobiology 2009, 7:308-323.
    • (2009) Geobiology , vol.7 , pp. 308-323
    • Buhring, S.I.1    Smittenberg, R.H.2    Sachse, D.3    Lipp, J.S.4    Golubic, S.5    Sachs, J.P.6    Hinrichs, K.U.7    Summons, R.E.8
  • 5
    • 73449134067 scopus 로고    scopus 로고
    • Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA)
    • Engel A.S., Meisinger D.B., Porter M.L., Payn R.A., Schmid M., Stern L.A., Schleifer K.H., Lee N.M. Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA). ISME J 2010, 4:98-110.
    • (2010) ISME J , vol.4 , pp. 98-110
    • Engel, A.S.1    Meisinger, D.B.2    Porter, M.L.3    Payn, R.A.4    Schmid, M.5    Stern, L.A.6    Schleifer, K.H.7    Lee, N.M.8
  • 7
    • 70349209126 scopus 로고    scopus 로고
    • Major role of microbes in carbon fluxes during Austral winter in the Southern Drake Passage
    • Manganelli M., Malfatti F., Samo T.J., Mitchell B.G., Wang H., Azam F. Major role of microbes in carbon fluxes during Austral winter in the Southern Drake Passage. PLoS One 2009, 4:e6941.
    • (2009) PLoS One , vol.4
    • Manganelli, M.1    Malfatti, F.2    Samo, T.J.3    Mitchell, B.G.4    Wang, H.5    Azam, F.6
  • 9
    • 77951769203 scopus 로고    scopus 로고
    • Diversity of Haloquadratum and other haloarchaea in three, geographically distant, Australian saltern crystallizer ponds
    • Oh D., Porter K., Russ B., Burns D., Dyall-Smith M. Diversity of Haloquadratum and other haloarchaea in three, geographically distant, Australian saltern crystallizer ponds. Extremophiles 2010, 14:161-169.
    • (2010) Extremophiles , vol.14 , pp. 161-169
    • Oh, D.1    Porter, K.2    Russ, B.3    Burns, D.4    Dyall-Smith, M.5
  • 10
    • 77956406686 scopus 로고    scopus 로고
    • Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling
    • Pfister C.A., Meyer F., Antonopoulos D.A. Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling. PLoS One 2010, 5:e10518.
    • (2010) PLoS One , vol.5
    • Pfister, C.A.1    Meyer, F.2    Antonopoulos, D.A.3
  • 12
    • 70350136692 scopus 로고    scopus 로고
    • Archaeal diversity at the great salt plains of Oklahoma described by cultivation and molecular analyses
    • Caton T.M., Caton I.R., Witte L.R., Schneegurt M.A. Archaeal diversity at the great salt plains of Oklahoma described by cultivation and molecular analyses. Microb Ecol 2009, 58:519-528.
    • (2009) Microb Ecol , vol.58 , pp. 519-528
    • Caton, T.M.1    Caton, I.R.2    Witte, L.R.3    Schneegurt, M.A.4
  • 14
    • 58549120798 scopus 로고    scopus 로고
    • Viral biogeography revealed by signatures in Sulfolobus islandicus genomes
    • Held N.L., Whitaker R.J. Viral biogeography revealed by signatures in Sulfolobus islandicus genomes. Environ Microbiol 2009, 11:457-466.
    • (2009) Environ Microbiol , vol.11 , pp. 457-466
    • Held, N.L.1    Whitaker, R.J.2
  • 17
    • 80051781242 scopus 로고    scopus 로고
    • Sulfolobus Turreted Icosahedral Virus c92 protein responsible for formation of pyramid-like cellular lysis structures
    • Snyder J.C., Brumfield S.K., Peng N., She Q., Young M.J. Sulfolobus Turreted Icosahedral Virus c92 protein responsible for formation of pyramid-like cellular lysis structures. J Virol 2011, 10.1128/JVI. 00379-11.
    • (2011) J Virol
    • Snyder, J.C.1    Brumfield, S.K.2    Peng, N.3    She, Q.4    Young, M.J.5
  • 23
    • 70350444919 scopus 로고    scopus 로고
    • Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism
    • Redder P., Peng X., Brugger K., Shah S.A., Roesch F., Greve B., She Q., Schleper C., Forterre P., Garrett R.A., et al. Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ Microbiol 2009, 11:2849-2862.
    • (2009) Environ Microbiol , vol.11 , pp. 2849-2862
    • Redder, P.1    Peng, X.2    Brugger, K.3    Shah, S.A.4    Roesch, F.5    Greve, B.6    She, Q.7    Schleper, C.8    Forterre, P.9    Garrett, R.A.10
  • 24
    • 21644445703 scopus 로고    scopus 로고
    • Sulfolobus tengchongensis spingle-shaped virus STVS1: virus-host interactions and genomic features
    • Xiang X., Chen L., Huang X., Luo Y., She Q., Huang L. Sulfolobus tengchongensis spingle-shaped virus STVS1: virus-host interactions and genomic features. J Virol 2005, 79:8677-8686.
    • (2005) J Virol , vol.79 , pp. 8677-8686
    • Xiang, X.1    Chen, L.2    Huang, X.3    Luo, Y.4    She, Q.5    Huang, L.6
  • 25
    • 64149084027 scopus 로고    scopus 로고
    • An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope
    • Pietilä M.K., Roine E., Paulin L., Kalkkinen N., Bamford D.H. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol Microbiol 2009, 72:307-319.
    • (2009) Mol Microbiol , vol.72 , pp. 307-319
    • Pietilä, M.K.1    Roine, E.2    Paulin, L.3    Kalkkinen, N.4    Bamford, D.H.5
  • 26
    • 79953281735 scopus 로고    scopus 로고
    • Bacteria-phage antagonistic coevolution in soil
    • Gomez P., Buckling A. Bacteria-phage antagonistic coevolution in soil. Science 2011, 332:106-109.
    • (2011) Science , vol.332 , pp. 106-109
    • Gomez, P.1    Buckling, A.2
  • 27
    • 30044450170 scopus 로고    scopus 로고
    • Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses
    • Khayat R., Tang L., Larson E.T., Lawrence C.M., Young M., Johnson J.E. Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc Natl Acad Sci U S A 2005, 102:18944-18949.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 18944-18949
    • Khayat, R.1    Tang, L.2    Larson, E.T.3    Lawrence, C.M.4    Young, M.5    Johnson, J.E.6
  • 28
    • 77956034102 scopus 로고    scopus 로고
    • The architecture and chemical stability of the archaeal Sulfolobus turreted icosahedral virus
    • Khayat R., Fu C.Y., Ortmann A.C., Young M.J., Johnson J.E. The architecture and chemical stability of the archaeal Sulfolobus turreted icosahedral virus. J Virol 2010, 84:9575-9583.
    • (2010) J Virol , vol.84 , pp. 9575-9583
    • Khayat, R.1    Fu, C.Y.2    Ortmann, A.C.3    Young, M.J.4    Johnson, J.E.5
  • 29
    • 33746210122 scopus 로고    scopus 로고
    • Characterization of the archaeal thermophile Sulfolobus turreted icosahedral virus validates an evolutionary link among double-stranded DNA viruses from all domains of life
    • Maaty W.S., Ortmann A.C., Dlakic M., Schulstad K., Hilmer J.K., Liepold L., Weidenheft B., Khayat R., Douglas T., Young M.J., et al. Characterization of the archaeal thermophile Sulfolobus turreted icosahedral virus validates an evolutionary link among double-stranded DNA viruses from all domains of life. J Virol 2006, 80:7625-7635.
    • (2006) J Virol , vol.80 , pp. 7625-7635
    • Maaty, W.S.1    Ortmann, A.C.2    Dlakic, M.3    Schulstad, K.4    Hilmer, J.K.5    Liepold, L.6    Weidenheft, B.7    Khayat, R.8    Douglas, T.9    Young, M.J.10
  • 34
    • 33746210125 scopus 로고    scopus 로고
    • Young M, and Lawrence CM: Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold
    • Larson E.T., Reiter D. Young M, and Lawrence CM: Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold. J Virol 2006, 80:7636-7644.
    • (2006) J Virol , vol.80 , pp. 7636-7644
    • Larson, E.T.1    Reiter, D.2
  • 35
    • 35548988777 scopus 로고    scopus 로고
    • Young MJ, and Lawrence CM: A winged-helix protein from Sulfolobus turreted icosahedral virus points toward stabilizing disulfide bonds in the intracellular proteins of a hyperthermophilic virus
    • Larson E.T., Eilers B., Menon S., Reiter D., Ortmann A. Young MJ, and Lawrence CM: A winged-helix protein from Sulfolobus turreted icosahedral virus points toward stabilizing disulfide bonds in the intracellular proteins of a hyperthermophilic virus. Virology 2007, 368:249-261.
    • (2007) Virology , vol.368 , pp. 249-261
    • Larson, E.T.1    Eilers, B.2    Menon, S.3    Reiter, D.4    Ortmann, A.5
  • 36
    • 66149105112 scopus 로고    scopus 로고
    • Douglas T, and Young MJ: Particle assembly and ultrastructural features associated with replication of the lytic archaeal virus Sulfolobus turreted icosahedral virus (STIV)
    • Brumfield S.K., Ortmann A.C., Ruigrok V., Suci P. Douglas T, and Young MJ: Particle assembly and ultrastructural features associated with replication of the lytic archaeal virus Sulfolobus turreted icosahedral virus (STIV). J Virol 2009, 83:5964-5970.
    • (2009) J Virol , vol.83 , pp. 5964-5970
    • Brumfield, S.K.1    Ortmann, A.C.2    Ruigrok, V.3    Suci, P.4
  • 37
    • 0345583680 scopus 로고    scopus 로고
    • Kristjansson JK, and Zillig W: A novel virus family, the Rudiviridae: Structure, virus-host interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2
    • Prangishvili D., Arnold H.P., Gotz D., Ziese U., Holz I. Kristjansson JK, and Zillig W: A novel virus family, the Rudiviridae: Structure, virus-host interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2. Genetics 1999, 152:1387-1396.
    • (1999) Genetics , vol.152 , pp. 1387-1396
    • Prangishvili, D.1    Arnold, H.P.2    Gotz, D.3    Ziese, U.4    Holz, I.5
  • 38
    • 64049102858 scopus 로고    scopus 로고
    • Johnson JE, and Williamson JR: Synergy of NMR, computation, and X-ray crystallography for structural biology
    • Szymczyna B.R., Taurog R.E., Young M.J., Snyder J.C. Johnson JE, and Williamson JR: Synergy of NMR, computation, and X-ray crystallography for structural biology. Structure 2009, 17:499-507.
    • (2009) Structure , vol.17 , pp. 499-507
    • Szymczyna, B.R.1    Taurog, R.E.2    Young, M.J.3    Snyder, J.C.4
  • 39
    • 7744223325 scopus 로고    scopus 로고
    • Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon Sulfolobus
    • Kessler A., Brinkman A.B., Oost J.V.D., Prangishvili D. Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon Sulfolobus. J Bacteriol 2004, 186:7745-7753.
    • (2004) J Bacteriol , vol.186 , pp. 7745-7753
    • Kessler, A.1    Brinkman, A.B.2    Oost, J.V.D.3    Prangishvili, D.4
  • 40
    • 77953723695 scopus 로고    scopus 로고
    • The Sulfolobus rod-shaped virus 2 encodes a prominent structural component of the unique virion release system in Archaea
    • Quax T.E., Krupovic M., Lucas S., Forterre P., Prangishvili D. The Sulfolobus rod-shaped virus 2 encodes a prominent structural component of the unique virion release system in Archaea. Virology 2010, 404:1-4.
    • (2010) Virology , vol.404 , pp. 1-4
    • Quax, T.E.1    Krupovic, M.2    Lucas, S.3    Forterre, P.4    Prangishvili, D.5
  • 43
    • 57349157739 scopus 로고    scopus 로고
    • The transcription programme of the protein-primed halovirus SH1
    • Porter K., Russ B.E., Yang J., Dyall-Smith M.L. The transcription programme of the protein-primed halovirus SH1. Microbiology 2008, 154:3599-3608.
    • (2008) Microbiology , vol.154 , pp. 3599-3608
    • Porter, K.1    Russ, B.E.2    Yang, J.3    Dyall-Smith, M.L.4
  • 44
    • 55349085095 scopus 로고    scopus 로고
    • Transfection of haloarchaea by the DNAs of spindle and round haloviruses and the use of transposon mutagenesis to identify non-essential regions
    • Porter K., Dyall-Smith M.L. Transfection of haloarchaea by the DNAs of spindle and round haloviruses and the use of transposon mutagenesis to identify non-essential regions. Mol Microbiol 2008, 70:1236-1245.
    • (2008) Mol Microbiol , vol.70 , pp. 1236-1245
    • Porter, K.1    Dyall-Smith, M.L.2
  • 45
    • 33744929889 scopus 로고    scopus 로고
    • His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus
    • Bath C., Cukalac T., Porter K., Dyall-Smith M.L. His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus. Virology 2006, 350:228-239.
    • (2006) Virology , vol.350 , pp. 228-239
    • Bath, C.1    Cukalac, T.2    Porter, K.3    Dyall-Smith, M.L.4
  • 46
    • 0037716583 scopus 로고    scopus 로고
    • Haloarchaeal viruses: how diverse are they?
    • Dyall-Smith M., Tang S.L., Bath C. Haloarchaeal viruses: how diverse are they?. Res Microbiol 2003, 154:309-313.
    • (2003) Res Microbiol , vol.154 , pp. 309-313
    • Dyall-Smith, M.1    Tang, S.L.2    Bath, C.3
  • 49
    • 78449254205 scopus 로고    scopus 로고
    • Evolutionary dynamics of CRISPR systems in the ocean metagenome
    • Sorokin V.A., Gelfand M.S., Artamonova Ii Evolutionary dynamics of CRISPR systems in the ocean metagenome. Appl Environ Microbiol 2010, 151:2551-2561.
    • (2010) Appl Environ Microbiol , vol.151 , pp. 2551-2561
    • Sorokin, V.A.1    Gelfand, M.S.2    Artamonova, I.I.3
  • 52
    • 70350439595 scopus 로고    scopus 로고
    • Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences
    • Chen F., Wang K., Huang S., Cai H., Zhao M., Jiao N., Wommack K.E. Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences. Environ Microbiol 2009, 11:2884-2892.
    • (2009) Environ Microbiol , vol.11 , pp. 2884-2892
    • Chen, F.1    Wang, K.2    Huang, S.3    Cai, H.4    Zhao, M.5    Jiao, N.6    Wommack, K.E.7
  • 53
    • 79960468271 scopus 로고    scopus 로고
    • Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
    • Anderson R.E., Brazelton W.J., Baross J.A. Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage. FEMS Microb Ecol 2011, 1-14.
    • (2011) FEMS Microb Ecol , pp. 1-14
    • Anderson, R.E.1    Brazelton, W.J.2    Baross, J.A.3
  • 54
    • 78149449833 scopus 로고    scopus 로고
    • Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples
    • Snyder J.C., Bateson M.M., Lavin M., Young M.J. Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples. Appl Environ Microbiol 2010, 76:7251-7258.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7251-7258
    • Snyder, J.C.1    Bateson, M.M.2    Lavin, M.3    Young, M.J.4
  • 55
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic archaea
    • Whitaker R.J., Grogan D.W., Taylor J.W. Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 2003, 301:976-978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3
  • 59
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath P., Barrangou R. CRISPR/Cas, the immune system of bacteria and archaea. Science 2010, 327:167-170.
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 60
    • 84873139167 scopus 로고    scopus 로고
    • and Young MJ: The prevalence of STIV c92-like proteins in acidic thermal environments. Advances in Virology Article ID 650930, 6 pages, doi:10.1155/2011/650930
    • Snyder JC, Bolduc B, Bateson MM, and Young MJ: The prevalence of STIV c92-like proteins in acidic thermal environments. Advances in Virology 2011, Article ID 650930, 6 pages, doi:10.1155/2011/650930.
    • (2011)
    • Snyder, J.C.1    Bolduc, B.2    Bateson, M.M.3


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