The transcription programme of the protein-primed halovirus SH1

Microbiology

Volumn 154, Issue 11, 2008, Pages 3599-3608

  Porter, Kate ^a   Russ, Brendan E ^b   Yang, Ji ^b   Dyall Smith, Michael L ^c  

^a Biota Holdings Ltd   (Australia)

^b UNIVERSITY OF MELBOURNE   (Australia)

^c MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; VIRUS DNA; VIRUS RNA;

ARTICLE; GENE EXPRESSION REGULATION; GENE MAPPING; GENETIC ANALYSIS; HALOPHILIC ARCHAEON; HALOVIRUS SH1; INVERTED TERMINAL REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROMOTER REGION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS; VIRUS GENE; VIRUS INFECTION; VIRUS TRANSCRIPTION;

BACTERIOPHAGES; BASE SEQUENCE; CHROMOSOME MAPPING; DNA PRIMERS; GENOME, VIRAL; HALOARCULA; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC; RNA, VIRAL; SEQUENCE ALIGNMENT; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC;

HALOARCULA HISPANICA; HALOBACTERIA;

EID: 57349157739     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2008/019422-0     Document Type: Article

References (43)

1. Ackermann, H. W. (2007). 5500 Phages examined in the electron microscope. Arch Virol 152, 227-243.
2. Ausubel, F. M., Brent, R. Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (1994). Current Protocols in Molecular Biology. New York: John Wiley and Sons.
3. Azzam, M. E. & Algranati, I. D. (1973). Mechanism of puromycin action: fate of ribosomes after release of nascent protein chains from polysomes. Proc Natl Acad Sci U S A 70 3866-3869.
4. Badia, D., Camacho, A., Perez-Lago, L., Escendon, C., Salas, M. & Coll, M. (2006). The structure of phage φ29 transcription regulator p4-DNA complex reveals an N-hook motif for DNA. Mol Cell 22, 73-81.
5. Baliga, N. S., Bonneau, R. Facciotti, M. T., Pan, M., Glusman, G., Deutsch, E. W., Shannon, P., Chiu, Y., Weng, R. S. & other authors (2004). Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res 14, 2221-2234.
6. Bamford, D. H., Ravantti, J. J., Rönnholm, G., Laurinavičius, S., Kukkaro, P., Dyall-Smith, M., Somerharju, P., Kalkkinen, N. & Bamford, J. K. (2005). Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanica. J Virol 79, 9097-9107.
7. Bath, C., Cukalac, T., Porter, K. & Dyall-Smith, M. (2006). His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus. Virology 350, 228-239.
8. Beck, C. F. & Warren, R. A. (1988). Divergent promoters, a common form of gene organization. Microbiol Rev 52, 318-326.
9. Benlloch, S., López-López, A., Casamayor, E. O., Øvreås, L., Goddard, V., Daae, F. L., Smerdon, G., Massana, R., Joint, I. & other authors (2002). Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ Microbiol 4, 349-360.
10. Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F. & Oesterhelt, D. (2006). The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity. BMC Genomics 7, 169.
11. Bouvier, T. & del Giorgio, P. (2007). Key role of selective viral-induced mortality in determining marine bacterial community composition. Environ Microbiol 9, 287-297.
12. Brenneis, M., Hering, O., Lange, C. & Soppa, J. (2007). Experimental characterization of cis-acting elements important for translation and transcription in halophilic Archaea. PLoS Genet 3, e229.
13. Burns, D. G., Camakaris, H. M., Janssen, P. H. & Dyall-Smith, M. L. (2004). Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable. Appl Environ Microbiol 70, 5258-5265.
14. Camacho, A. & Salas, M. (2001). Mechanism for the switch of φ6 DNA early to late transcription by regulatory protein p4 and histone-like protein p6. EMBO J 20, 6060-6070.
15. Cline, S. W. & Doolittle, W. F. (1992). Transformation of members of the genus Haloarcula with shuttle vectors based on Halobacterium halobium and Haloferax volcanii plasmid replicons. J Bacteriol 174, 1076-1080.
16. Contursi, P., Cannio, R., Prato, S., She, Q., Rossi, M. & Bartolucci, S. (2007). Transcriptional analysis of the genetic element pSSVx: differential and temporal regulation of gene expression reveals correlation between transcription and replication. J Bacteriol 189, 6339-6350.
17. Dyall-Smith, M., Tang, S. L. & Bath, C. (2003). Haloarchaeal viruses: how diverse are they? Res Microbiol 154, 309-313.
18. Falb, M., Pfeiffer, F., Palm, P., Rodewald, K., Hickmann, V., Tittor, J. & Oesterhelt, D. (2005). Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis. Genome Res 15, 1336-1343.
19. Fauquet, C. M., Mayo, M. A., Maniloff, J., Desselberger, U. & Ball, L. A. (2005). Virus Taxonomy, VIIIth Report of the ICTV. London: Elsevier/Academic Press.
20. Fröls, S., Gordon, P. M., Panlilio, M. A., Schleper, C. & Sensen, C. W. (2007). Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology 365, 48-59.
21. Gropp, F., Palm, P. & Zillig, W. (1989). Expression and regulation of Halobacterium halobium phage φH genes. Can J Microbiol 35, 182-188.
22. Gropp, F., Grampp, B., Stolt, P., Palm, P. & Zillig, W. (1992). The immunity-conferring plasmid pφHL from the Halobacterium salinarium phage φH: nucleotide sequence and transcription. Virology 190, 45-54.
23. Guixa-Boixareu, N., Calderón-Paz, J. I., Heldal, M., Bratbak, G. & Pedrós-Alió, C. (1996). Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient. Aquat Microb Ecol 11, 215-227.
24. Hendrix, R. W. (2002). Bacteriophages: evolution of the majority. Theor Popul Biol 61, 471-480.
25. Hendrix, R. W., Smith, M. C., Burns, R. N., Ford, M. E. & Hatfull, G. F. (1999). Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc Natl Acad Sci U S A 96, 2192-2197.
26. Iro, M., Klein, R., Galos, B., Baranyi, U., Rossler, N. & Witte, A. (2007). The lysogenic region of virus Ch1: identification of a repressor-operator system and determination of its activity in halophilic Archaea. Extremophiles 11, 383-396.
27. Jäälinoja, H. T., Roine, E., Laurinmäki, P., Kivelä, H. M., Bamford, D. H. & Butcher, S. J. (2008). Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus. Proc Natl Acad Sci U S A 105, 8008-8013.
28. Juez, G., Rodriguez-Valera, F., Ventosa, A. & Kushner, D. J. (1986). Haloarcula hispanica spec. nov. and Haloferax gibbonsii spec. nov., two new species of extremely halophilic archaebacteria. Syst Appl Microbiol 8, 75-79.
29. Kessler, A., Brinkman, A. B., van der Oost, J. & Prangishvili, D. (2004). Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon Sulfolobus. J Bacteriol 186, 7745-7753.
30. Kessler, A., Sezonov, G., Guijarro, J. I., Desnoues, N., Rose, T., Delepierre, M., Bell, S. D. & Prangishvili, D. (2006). A novel archaeal regulatory protein, Sta1, activates transcription from viral promoters. Nucleic Acids Res 34, 4837-4845.
31. Matsunaga, F., Forterre, P., Ishino, Y. & Myllykallio, H. (2001). In vivo interactions of archael Cdc6/Orc1 and minichromosome maintenance proteins with the replication origin. Proc Natl Acad Sci U S A 98, 11152-11157.
32. Meijer, W. J., Horcajadas, J. A. & Salas, M. (2001). 29 family of phages. Microbiol Mol Biol Rev 65, 261-287.
33. Ng, W. V., Kennedy, S. P., Mahairas, G. G., Berquist, B., Pan, M., Shukla, H. D., Lasky, S. R., Baliga, N. S., Thorsson, V. & other authors (2000). Genome sequence of Halobacterium species NRC-1. Proc Natl Acad Sci U S A 97, 12176-12181.
34. Nuttall, S. D. & Dyall-Smith, M. L. (1993). HF1 and HF2: novel bacteriophages of halophilic archaea. Virology 197, 678-684.
35. Oren, A., Bratbak, G. & Heldal, M. (1997). Occurrence of virus-like particles in the Dead Sea. Extremophiles 1, 143-149.
36. Porter, K. & Dyall-Smith, M. L. (2008). Transfection of haloarchaea by the DNAs of spindle and round haloviruses and the use of transposon mutagenesis to identify non-essential regions. Molecular Microbiology (in press).
37. Porter, K., Kukkaro, P., Bamford, J. K., Bath, C., Kivelä, H. M., Dyall-Smith, M. L. & Bamford, D. H. (2005). SH1: a novel, spherical halovirus isolated from an Australian hypersaline lake. Virology 335, 22-33.
38. Prangishvili, D., Forterre, P. & Garrett, R. A. (2006). Viruses of the Archaea: a unifying view. Nat Rev Microbiol 4, 837-848.
39. Reiter, W. D., Palm, P., Yeats, S. & Zillig, W. (1987). Gene expression in archaebacteria: physical mapping of constitutive and UV-inducible transcripts from the Sulfolobus virus-like particle SSV1. Mol Gen Genet 209, 270-275.
40. Stolt, P. & Zillig, W. (1993). Antisense RNA mediates transcriptional processing in an archaebacterium, indicating a novel kind of RNase activity. Mol Microbiol 7, 875-882.
41. Stolt, P. & Zillig, W. (1994). Transcription of the halophage H repressor gene is abolished by transcription from an inversely oriented lytic promoter. FEBS Lett 344, 125-128.
42. Weinbauer, M. G. (2004). Ecology of prokaryotic viruses. FEMS Microbiol Rev 28, 127-181.
43. Woods, W. G., Ngui, K. & Dyall-Smith, M. (1999). An improved transposon for the halophilic archaeon Haloarcula hispanica. J Bacteriol 181, 7140-7142.