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Volumn 58, Issue 3, 2009, Pages 519-528

Archaeal diversity at the Great Salt Plains of Oklahoma described by cultivation and molecular analyses

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL DNA; RNA 16S; SODIUM CHLORIDE;

EID: 70350136692     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-009-9507-y     Document Type: Article
Times cited : (31)

References (51)
  • 1
    • 34248550674 scopus 로고    scopus 로고
    • Effect of salinity changes on the bacterial diversity, photosynthesis and oxygen consumption of cyanobacterial mats from an intertidal flat of the Arabian Gulf
    • Abed RMM, Kohls K, de Beer D (2007) Effect of salinity changes on the bacterial diversity, photosynthesis and oxygen consumption of cyanobacterial mats from an intertidal flat of the Arabian Gulf. Environ Microbiol 9:1384-1392.
    • (2007) Environ Microbiol , vol.9 , pp. 1384-1392
    • Abed, R.M.M.1    Kohls, K.2    de Beer, D.3
  • 4
    • 2942545812 scopus 로고    scopus 로고
    • Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes
    • Boucher Y, Douady CJ, Sharma AK, Kamekura M, Doolittle WF (2004) Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes. J Bacteriol 186:3980-3990.
    • (2004) J Bacteriol , vol.186 , pp. 3980-3990
    • Boucher, Y.1    Douady, C.J.2    Sharma, A.K.3    Kamekura, M.4    Doolittle, W.F.5
  • 5
    • 0035065898 scopus 로고    scopus 로고
    • A strategy for optimizing quality and quantity of DNA extracted from soil
    • Bürgmann H, Pesaro M, Widmer F, Zeyer J (2001) A strategy for optimizing quality and quantity of DNA extracted from soil. J Microbiol Methods 45:7-20.
    • (2001) J Microbiol Methods , vol.45 , pp. 7-20
    • Bürgmann, H.1    Pesaro, M.2    Widmer, F.3    Zeyer, J.4
  • 6
    • 4444305820 scopus 로고    scopus 로고
    • Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable
    • Burns DG, Camakaris HM, Janssen PH, Dyall-Smith ML (2004) Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable. Appl Environ Microbiol 70:5258-5265.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5258-5265
    • Burns, D.G.1    Camakaris, H.M.2    Janssen, P.H.3    Dyall-Smith, M.L.4
  • 10
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 11
    • 0035527414 scopus 로고    scopus 로고
    • Environmental diversity of bacteria and archaea
    • DeLong EF, Pace NR (2001) Environmental diversity of bacteria and archaea. Syst Biol 50:470-478.
    • (2001) Syst Biol , vol.50 , pp. 470-478
    • DeLong, E.F.1    Pace, N.R.2
  • 13
    • 33847171444 scopus 로고    scopus 로고
    • Prokaryotic life in a potash-polluted marsh with emphasis on N-metabolizing microorganisms
    • Eilmus S, Rösch C, Bothe H (2007) Prokaryotic life in a potash-polluted marsh with emphasis on N-metabolizing microorganisms. Environ Pollut 146:478-491.
    • (2007) Environ Pollut , vol.146 , pp. 478-491
    • Eilmus, S.1    Rösch, C.2    Bothe, H.3
  • 14
    • 8444239817 scopus 로고    scopus 로고
    • Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring
    • Elshahed MS, Najar FZ, Roe BA, Oren A, Dewers TA, Krumholz LR (2004) Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring. Appl Environ Microbiol 70:2230-2239.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2230-2239
    • Elshahed, M.S.1    Najar, F.Z.2    Roe, B.A.3    Oren, A.4    Dewers, T.A.5    Krumholz, L.R.6
  • 15
    • 4344661889 scopus 로고    scopus 로고
    • Halorubrum tibetense sp. nov., a novel haloalkaliphilic archaeon from Lake Zabuye in Tibet, China
    • Fan H, Xue Y, Ma Y, Ventosa A, Grant WP (2004) Halorubrum tibetense sp. nov., a novel haloalkaliphilic archaeon from Lake Zabuye in Tibet, China. Int J Syst Evol Microbiol 54:1213-1216.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1213-1216
    • Fan, H.1    Xue, Y.2    Ma, Y.3    Ventosa, A.4    Grant, W.P.5
  • 16
    • 0037270927 scopus 로고    scopus 로고
    • Influence of drying-rewetting frequency on soil bacterial community structure
    • Fierer N, Schimel JP, Holden PA (2003) Influence of drying-rewetting frequency on soil bacterial community structure. Microb Ecol 45:63-71.
    • (2003) Microb Ecol , vol.45 , pp. 63-71
    • Fierer, N.1    Schimel, J.P.2    Holden, P.A.3
  • 17
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 18
  • 20
    • 34248971890 scopus 로고
    • The competitive exclusion principle
    • Hardin G (1960) The competitive exclusion principle. Science 131:1292-1297.
    • (1960) Science , vol.131 , pp. 1292-1297
    • Hardin, G.1
  • 22
    • 5044240973 scopus 로고    scopus 로고
    • BELLEROPHON: A program to detect chimeric sequences in multiple alignments
    • Huber T, Faulkner G, Hugenholtz P (2004) BELLEROPHON: a program to detect chimeric sequences in multiple alignments. Bioinformatics 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 23
    • 34548418027 scopus 로고    scopus 로고
    • Microbial response to salinity change in Lake Chaka, a hypersaline lake on Tibetan plateau
    • Jiang H, Dong H, Yu B, Liu X, Li Y, Ji S et al (2007) Microbial response to salinity change in Lake Chaka, a hypersaline lake on Tibetan plateau. Environ Microbiol 9:2603-2621.
    • (2007) Environ Microbiol , vol.9 , pp. 2603-2621
    • Jiang, H.1    Dong, H.2    Yu, B.3    Liu, X.4    Li, Y.5    Ji, S.6
  • 25
    • 0029782668 scopus 로고    scopus 로고
    • Physiological ecology of Methanobrevibacter cuticularis sp. nov. and Methanobrevibacter curvatus sp. nov., isolated from the hindgut of the termite Reticulitermes flavipes
    • Leadbetter JR, Breznak JA (1996) Physiological ecology of Methanobrevibacter cuticularis sp. nov. and Methanobrevibacter curvatus sp. nov., isolated from the hindgut of the termite Reticulitermes flavipes. Appl Environ Microbiol 62:3620-3631.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3620-3631
    • Leadbetter, J.R.1    Breznak, J.A.2
  • 26
    • 33645994465 scopus 로고    scopus 로고
    • Carbon substrate utilization, antibiotic sensitivity, and numerical taxonomy of bacterial isolates from the Great Salt Plains of Oklahoma
    • Litzner BR, Caton TM, Schneegurt MA (2006) Carbon substrate utilization, antibiotic sensitivity, and numerical taxonomy of bacterial isolates from the Great Salt Plains of Oklahoma. Arch Microbiol 185:286-296.
    • (2006) Arch Microbiol , vol.185 , pp. 286-296
    • Litzner, B.R.1    Caton, T.M.2    Schneegurt, M.A.3
  • 27
    • 57349150512 scopus 로고    scopus 로고
    • In situ studies of algal biomass in relation to physicochemical characteristics of the Salt Plains National Wildlife Refuge, Oklahoma, USA
    • Major KM, Kirkwood AE, Major CS, McCreadie JW, Henley WJ (2005) In situ studies of algal biomass in relation to physicochemical characteristics of the Salt Plains National Wildlife Refuge, Oklahoma, USA. Saline Syst 1:11-20.
    • (2005) Saline Syst , vol.1 , pp. 11-20
    • Major, K.M.1    Kirkwood, A.E.2    Major, C.S.3    McCreadie, J.W.4    Henley, W.J.5
  • 29
    • 35448992467 scopus 로고    scopus 로고
    • Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi An Natrun, Egypt
    • Mesbah NM, Abou-El-Ela SH, Wiegel J (2007) Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi An Natrun, Egypt. Microb Ecol 54:598-617.
    • (2007) Microb Ecol , vol.54 , pp. 598-617
    • Mesbah, N.M.1    Abou-El-Ela, S.H.2    Wiegel, J.3
  • 31
    • 0026602645 scopus 로고
    • Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui
    • Mylvaganam S, Dennis PP (1992) Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui. Genetics 130:399-410.
    • (1992) Genetics , vol.130 , pp. 399-410
    • Mylvaganam, S.1    Dennis, P.P.2
  • 32
    • 17644436677 scopus 로고    scopus 로고
    • Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil
    • Nusslein K, Tiedje JM (1999) Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil. Appl Environ Microbiol 65:3622-3626.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3622-3626
    • Nusslein, K.1    Tiedje, J.M.2
  • 33
    • 33751042574 scopus 로고    scopus 로고
    • Characterization of microbial diversity in a solar saltern of Korea based on 16S rRNA gene analysis
    • Park S-J, Kang C-H, Rhee S-K (2006) Characterization of microbial diversity in a solar saltern of Korea based on 16S rRNA gene analysis. J Microbiol Biotechnol 16:1640-1645.
    • (2006) J Microbiol Biotechnol , vol.16 , pp. 1640-1645
    • Park, S.-J.1    Kang, C.-H.2    Rhee, S.-K.3
  • 35
    • 0024943675 scopus 로고
    • The maintenance of species diversity by disturbance
    • Petraitis PS, Latham RE, Niesenbaum RA (1989) The maintenance of species diversity by disturbance. Q Rev Biol 64:393-418.
    • (1989) Q Rev Biol , vol.64 , pp. 393-418
    • Petraitis, P.S.1    Latham, R.E.2    Niesenbaum, R.A.3
  • 36
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz MF, Cavanaugh CM (1998) Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64:3724-3730.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 39
    • 0035431186 scopus 로고    scopus 로고
    • Novel haloarchaeal 16S rRNA gene sequences from Alpine Permo-Triassic rock salt
    • Radax C, Gruber C, Stan-Lotter H (2001) Novel haloarchaeal 16S rRNA gene sequences from Alpine Permo-Triassic rock salt. Extremophiles 5:221-228.
    • (2001) Extremophiles , vol.5 , pp. 221-228
    • Radax, C.1    Gruber, C.2    Stan-Lotter, H.3
  • 41
    • 70350211361 scopus 로고
    • Preliminary projections of the effects of chloride-control structures on the quaternary aquifer at the Great Salt Plains, Oklahoma. US Geological Survey
    • Oklahoma City, OK
    • Reed JE (1982) Preliminary projections of the effects of chloride-control structures on the quaternary aquifer at the Great Salt Plains, Oklahoma. US Geological Survey, Water-Resources Investigations 80-120, Oklahoma City, OK.
    • (1982) Water-Resources Investigations 80-120
    • Reed, J.E.1
  • 42
    • 0019182567 scopus 로고
    • Isolation of extremely halophilic bacteria able to grow in defined organic media with single carbon sources
    • Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1980) Isolation of extremely halophilic bacteria able to grow in defined organic media with single carbon sources. J Gen Microbiol 119:535-538.
    • (1980) J Gen Microbiol , vol.119 , pp. 535-538
    • Rodriguez-Valera, F.1    Ruiz-Berraquero, F.2    Ramos-Cormenzana, A.3
  • 43
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 45
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki MT, Giovannoni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625-630.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 47
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 49
    • 25144481977 scopus 로고    scopus 로고
    • Archaeal diversity along a soil salinity gradient prone to disturbance
    • Walsh DA, Papke RT, Doolittle WF (2005) Archaeal diversity along a soil salinity gradient prone to disturbance. Environ Microbiol 7:1655-1666.
    • (2005) Environ Microbiol , vol.7 , pp. 1655-1666
    • Walsh, D.A.1    Papke, R.T.2    Doolittle, W.F.3
  • 50
    • 0030844080 scopus 로고    scopus 로고
    • Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes
    • Wang GC, Wang Y (1997) Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes. Appl Environ Microbiol. 63:4645-4650.
    • (1997) Appl Environ Microbiol. , vol.63 , pp. 4645-4650
    • Wang, G.C.1    Wang, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.