-
1
-
-
19344372271
-
Systems biology: its practice and challenges
-
Aderem A. Systems biology: its practice and challenges. Cell 2005, 121:511.
-
(2005)
Cell
, vol.121
, pp. 511
-
-
Aderem, A.1
-
2
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert R., Jeong H., Barabasi A.L. Error and attack tolerance of complex networks. Nature 2000, 406:378.
-
(2000)
Nature
, vol.406
, pp. 378
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.L.3
-
3
-
-
33745075591
-
Tools for kinetic modeling of biochemical networks
-
Alves R., Antunes F., Salvador A. Tools for kinetic modeling of biochemical networks. Nat. Biotechnol. 2006, 24:667.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 667
-
-
Alves, R.1
Antunes, F.2
Salvador, A.3
-
4
-
-
38749098685
-
Cancer as robust intrinsic state of endogenous molecular-cellular network shaped by evolution
-
Ao P., Galas D., Hood L., Zhu X. Cancer as robust intrinsic state of endogenous molecular-cellular network shaped by evolution. Med. Hypotheses 2008, 70:678.
-
(2008)
Med. Hypotheses
, vol.70
, pp. 678
-
-
Ao, P.1
Galas, D.2
Hood, L.3
Zhu, X.4
-
6
-
-
0034995375
-
Complex biology with no parameters
-
Bailey J.E. Complex biology with no parameters. Nat. Biotechnol. 2001, 19:503.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 503
-
-
Bailey, J.E.1
-
7
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabasi A.L., Oltvai Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 2004, 5:101.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
8
-
-
0030797355
-
Robustness in simple biochemical networks
-
Barkai N., Leibler S. Robustness in simple biochemical networks. Nature 1997, 387:913.
-
(1997)
Nature
, vol.387
, pp. 913
-
-
Barkai, N.1
Leibler, S.2
-
9
-
-
0034212551
-
Engineering stability in gene networks by auto regulation
-
Becskei A., Serrano L. Engineering stability in gene networks by auto regulation. Nature 2000, 405:590.
-
(2000)
Nature
, vol.405
, pp. 590
-
-
Becskei, A.1
Serrano, L.2
-
10
-
-
0242416539
-
Noise in eukaryotic gene expression
-
Blake W.J., Kaern M., Cantor C.R., Collins J.J. Noise in eukaryotic gene expression. Nature 2003, 422:633.
-
(2003)
Nature
, vol.422
, pp. 633
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
11
-
-
0035826731
-
Don't stop for repairs in a war zone: Darwinian evolution unites genes and environment in cancer development
-
Breivik J. Don't stop for repairs in a war zone: Darwinian evolution unites genes and environment in cancer development. Proc. Natl. Acad. Sci. U.S. A. 2001, 98:5379.
-
(2001)
Proc. Natl. Acad. Sci. U.S. A.
, vol.98
, pp. 5379
-
-
Breivik, J.1
-
12
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L., Friedman N., Xie X.S. Stochastic protein expression in individual cells at the single molecule level. Nature 2006, 440:358.
-
(2006)
Nature
, vol.440
, pp. 358
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
13
-
-
4444236055
-
Kinetics of target site localization of a protein on DNA: a stochastic approach
-
Coppey M., Benichou O., Voituriez R., Moreau M. Kinetics of target site localization of a protein on DNA: a stochastic approach. Biophys. J. 2004, 87:1640.
-
(2004)
Biophys. J.
, vol.87
, pp. 1640
-
-
Coppey, M.1
Benichou, O.2
Voituriez, R.3
Moreau, M.4
-
14
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: a literature review
-
deJong H. Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 2002, 9:67.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 67
-
-
deJong, H.1
-
15
-
-
77952778270
-
Prediction of posttranslational modification of proteins from their amino acid sequence
-
Eisenhaber B., Eisenhaber F. Prediction of posttranslational modification of proteins from their amino acid sequence. Methods Mol. Biol. 2010, 609:365.
-
(2010)
Methods Mol. Biol.
, vol.609
, pp. 365
-
-
Eisenhaber, B.1
Eisenhaber, F.2
-
16
-
-
0242490781
-
Fast evaluation of fluctuations in biochemical networks with the linear noise approximation
-
Elf J., Ehrenberg M. Fast evaluation of fluctuations in biochemical networks with the linear noise approximation. Genome Res. 2003, 13:2475.
-
(2003)
Genome Res.
, vol.13
, pp. 2475
-
-
Elf, J.1
Ehrenberg, M.2
-
17
-
-
34249093323
-
Dynamic measure of gene co-regulation
-
Farina L., De S.A., Morelli G., Ruberti I. Dynamic measure of gene co-regulation. IET Syst. Biol. 2007, 1:10.
-
(2007)
IET Syst. Biol.
, vol.1
, pp. 10
-
-
Farina, L.1
De, S.A.2
Morelli, G.3
Ruberti, I.4
-
18
-
-
0001364051
-
The existence and uniqueness of steady states for a class of chemical reaction networks
-
Feinberg M. The existence and uniqueness of steady states for a class of chemical reaction networks. Arch. Rational Mech. Anal. 1995, 132:311.
-
(1995)
Arch. Rational Mech. Anal.
, vol.132
, pp. 311
-
-
Feinberg, M.1
-
19
-
-
3242726930
-
Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms
-
Garcia-Martinez J., Aranda A., Perez-Ortin J.E. Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms. Mol. Cell 2004, 15:303.
-
(2004)
Mol. Cell
, vol.15
, pp. 303
-
-
Garcia-Martinez, J.1
Aranda, A.2
Perez-Ortin, J.E.3
-
21
-
-
0042100651
-
What is the role of chaotic scattering in irreversible processes?
-
Gaspard P. What is the role of chaotic scattering in irreversible processes?. Chaos 1993, 3:427.
-
(1993)
Chaos
, vol.3
, pp. 427
-
-
Gaspard, P.1
-
22
-
-
80051666872
-
Computation of biochemical pathways and genetic networks, BioSim event
-
BioQuant, University of Heidelberg, R. Gauges, U. Kummer, J. Pahle, P. Willy (Eds.)
-
Gauges R., Kummer U., Pahle J., Willy P. Computation of biochemical pathways and genetic networks, BioSim event. Fifth Workshop on Computation of Biochemical Pathways and Genetic Networks 2008, BioQuant, University of Heidelberg. R. Gauges, U. Kummer, J. Pahle, P. Willy (Eds.).
-
(2008)
Fifth Workshop on Computation of Biochemical Pathways and Genetic Networks
-
-
Gauges, R.1
Kummer, U.2
Pahle, J.3
Willy, P.4
-
24
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
Golding I., Paulsson J., Zawilski S.M., Cox E.C. Real-time kinetics of gene activity in individual bacteria. Cell 2005, 123:1025.
-
(2005)
Cell
, vol.123
, pp. 1025
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
27
-
-
31944435731
-
Long-distance lateral diffusion of human Rad51 on double-stranded DNA
-
Graneli A., Yeykal C.C., Robertson R.B., Greene E.C. Long-distance lateral diffusion of human Rad51 on double-stranded DNA. Proc. Natl. Acad. Sci. U.S. A. 2006, 103:1221.
-
(2006)
Proc. Natl. Acad. Sci. U.S. A.
, vol.103
, pp. 1221
-
-
Graneli, A.1
Yeykal, C.C.2
Robertson, R.B.3
Greene, E.C.4
-
28
-
-
80051663880
-
Statistical mechanics of protein folding: some outstanding problems
-
John von Neumann Institute for Computing, N. Attig, K. Binder, H. Grubmuller, K. Kremer (Eds.)
-
Grosberg A. Statistical mechanics of protein folding: some outstanding problems. Computational Soft Matter: From Synthetic Polymers to Proteins, Lecture Notes 2004, 375-400. John von Neumann Institute for Computing. N. Attig, K. Binder, H. Grubmuller, K. Kremer (Eds.).
-
(2004)
Computational Soft Matter: From Synthetic Polymers to Proteins, Lecture Notes
, pp. 375-400
-
-
Grosberg, A.1
-
29
-
-
0029394767
-
Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli?
-
Guptasarma P. Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli?. Bioessays 1995, 17:987.
-
(1995)
Bioessays
, vol.17
, pp. 987
-
-
Guptasarma, P.1
-
30
-
-
0036656143
-
How to get from A to B: strategies for analysing protein motion on DNA
-
Halford S.E., Szczelkun M.D. How to get from A to B: strategies for analysing protein motion on DNA. Eur. Biophys. J. 2002, 31:257.
-
(2002)
Eur. Biophys. J.
, vol.31
, pp. 257
-
-
Halford, S.E.1
Szczelkun, M.D.2
-
31
-
-
0036184674
-
Beyond the central dogma
-
Henikoff S. Beyond the central dogma. Bioinformatics 2002, 18:223.
-
(2002)
Bioinformatics
, vol.18
, pp. 223
-
-
Henikoff, S.1
-
32
-
-
33845368513
-
COPASI - a COmplex PAthway SImulator
-
Hoops S., et al. COPASI - a COmplex PAthway SImulator. Bioinformatics 2006, 22:3067.
-
(2006)
Bioinformatics
, vol.22
, pp. 3067
-
-
Hoops, S.1
-
33
-
-
38349138834
-
Regulation of alternative splicing: more than just the ABCs
-
House A.E., Lynch K.W. Regulation of alternative splicing: more than just the ABCs. J. Biol. Chem. 2008, 283:1217.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 1217
-
-
House, A.E.1
Lynch, K.W.2
-
34
-
-
0037342537
-
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
-
Hucka M., et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 2003, 19:524.
-
(2003)
Bioinformatics
, vol.19
, pp. 524
-
-
Hucka, M.1
-
35
-
-
80051666270
-
-
Springer, Berlin, Heidelberg, 89-115
-
Ideker T.E. Network Genomics, Systems Biology 2007, Springer, Berlin, Heidelberg, 89-115.
-
(2007)
Network Genomics, Systems Biology
-
-
Ideker, T.E.1
-
36
-
-
34147164024
-
Is molecular profiling ready for use in clinical decision making?
-
Ioannidis J.P. Is molecular profiling ready for use in clinical decision making?. Oncologist 2007, 12:301.
-
(2007)
Oncologist
, vol.12
, pp. 301
-
-
Ioannidis, J.P.1
-
37
-
-
13444304216
-
Microarrays and molecular research: noise discovery?
-
Ioannidis J.P. Microarrays and molecular research: noise discovery?. Lancet 2005, 365:454.
-
(2005)
Lancet
, vol.365
, pp. 454
-
-
Ioannidis, J.P.1
-
38
-
-
0025445207
-
Efficient Solution of nonlinear ordinary differential equations expressed in S-System canonical form
-
Irvine D., Savageau M.A. Efficient Solution of nonlinear ordinary differential equations expressed in S-System canonical form. SIAM J. Numer. Anal. 1990, 27:704.
-
(1990)
SIAM J. Numer. Anal.
, vol.27
, pp. 704
-
-
Irvine, D.1
Savageau, M.A.2
-
39
-
-
33846796664
-
Graph theory and the evolution of autocatalitic networks
-
Wiley-VCH, S. Bornholdt, H.G. Shuster (Eds.)
-
Jain S., Krishna S. Graph theory and the evolution of autocatalitic networks. Handbook of Graphs and Networks: From the Genome to the Internet 2003, 356-395. Wiley-VCH. S. Bornholdt, H.G. Shuster (Eds.).
-
(2003)
Handbook of Graphs and Networks: From the Genome to the Internet
, pp. 356-395
-
-
Jain, S.1
Krishna, S.2
-
40
-
-
0842265974
-
Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors
-
Kadonaga J.T. Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors. Cell 2004, 116:247.
-
(2004)
Cell
, vol.116
, pp. 247
-
-
Kadonaga, J.T.1
-
41
-
-
0035193294
-
Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations
-
Kepler T., Eiston T. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys. J. 2001, 81:3116.
-
(2001)
Biophys. J.
, vol.81
, pp. 3116
-
-
Kepler, T.1
Eiston, T.2
-
42
-
-
7644238181
-
Biological robustness
-
Kitano H. Biological robustness. Nat. Rev. Genet. 2004, 5:826.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 826
-
-
Kitano, H.1
-
43
-
-
33847053710
-
The theory of biological robustness and its implication in cancer
-
Kitano H. The theory of biological robustness and its implication in cancer. Ernst. Schering. Res. Found. Workshop 2007, 69.
-
(2007)
Ernst. Schering. Res. Found. Workshop
, vol.69
-
-
Kitano, H.1
-
44
-
-
85045225438
-
Relaxation processes in statistical systems
-
Krylov N. Relaxation processes in statistical systems. Nature 1944, 153:709.
-
(1944)
Nature
, vol.153
, pp. 709
-
-
Krylov, N.1
-
45
-
-
0036729047
-
Can a biologist fix a radio? - or, what I learned while studying apoptosis
-
Lazebnik Y. Can a biologist fix a radio? - or, what I learned while studying apoptosis. Cancer Cell 2002, 2:179.
-
(2002)
Cancer Cell
, vol.2
, pp. 179
-
-
Lazebnik, Y.1
-
46
-
-
0034667792
-
Orchestrated response: a symphony of transcription factors for gene control
-
Lemon B., Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev. 2000, 14:2551.
-
(2000)
Genes Dev.
, vol.14
, pp. 2551
-
-
Lemon, B.1
Tjian, R.2
-
47
-
-
23844543409
-
Prion proteins: one surprise after another
-
Lindquist S.L. Prion proteins: one surprise after another. Harvey Lect. 2002, 98:173.
-
(2002)
Harvey Lect.
, vol.98
, pp. 173
-
-
Lindquist, S.L.1
-
48
-
-
0000241853
-
Deterministic non-periodic flow
-
Lorenz E. Deterministic non-periodic flow. J. Atmos. Sci. 2006, 20:130.
-
(2006)
J. Atmos. Sci.
, vol.20
, pp. 130
-
-
Lorenz, E.1
-
49
-
-
0015514970
-
Will a large complex system be stable?
-
May R.M. Will a large complex system be stable?. Nature 1972, 238:413.
-
(1972)
Nature
, vol.238
, pp. 413
-
-
May, R.M.1
-
50
-
-
0033083733
-
It's a noisy business! Genetic regulation at the nanomolar scale
-
McAdams H.H., Arkin A. It's a noisy business! Genetic regulation at the nanomolar scale. Trends Genet. 1999, 15:65.
-
(1999)
Trends Genet.
, vol.15
, pp. 65
-
-
McAdams, H.H.1
Arkin, A.2
-
52
-
-
33845243362
-
Cancer as an evolutionary and ecological process
-
Merlo L.M., Pepper J.W., Reid B.J., Maley C.C. Cancer as an evolutionary and ecological process. Nat. Rev. Cancer 2006, 6:924.
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 924
-
-
Merlo, L.M.1
Pepper, J.W.2
Reid, B.J.3
Maley, C.C.4
-
53
-
-
0037174670
-
Network motifs: simple building blocks of complex networks
-
Milo R., et al. Network motifs: simple building blocks of complex networks. Science 2002, 298:824.
-
(2002)
Science
, vol.298
, pp. 824
-
-
Milo, R.1
-
54
-
-
45249104689
-
What history tells us XIII. Fifty years of the central dogma
-
Morange M. What history tells us XIII. Fifty years of the central dogma. J. Biosci. 2008, 33:171.
-
(2008)
J. Biosci.
, vol.33
, pp. 171
-
-
Morange, M.1
-
55
-
-
0032167516
-
Transcription occurs in pulses in muscle fibers
-
Newlands S., et al. Transcription occurs in pulses in muscle fibers. Genes Dev. 1998, 12:2748.
-
(1998)
Genes Dev.
, vol.12
, pp. 2748
-
-
Newlands, S.1
-
57
-
-
44949184478
-
Erwin Schroedinger, Francis Crick and epigenetic stability
-
Ogryzko V.V. Erwin Schroedinger, Francis Crick and epigenetic stability. Biol. Direct. 2008, 3:15.
-
(2008)
Biol. Direct.
, vol.3
, pp. 15
-
-
Ogryzko, V.V.1
-
59
-
-
0033779678
-
Diffusional protein transport within the nucleus: a message in the medium
-
E73
-
Pederson T. Diffusional protein transport within the nucleus: a message in the medium. Nat. Cell Biol. 2000, 2. E73.
-
(2000)
Nat. Cell Biol.
, vol.2
-
-
Pederson, T.1
-
60
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N., Young J.W., Alon U., Swain P.S., Elowitz M.B. Gene regulation at the single-cell level. Science 2005, 307:1962.
-
(2005)
Science
, vol.307
, pp. 1962
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
61
-
-
77953371977
-
Systems biology and cancer prevention: all options on the table
-
Rosenfeld S., Kapetanovic I. Systems biology and cancer prevention: all options on the table. Gene Regul. Syst. Bio. 2008, 2:307.
-
(2008)
Gene Regul. Syst. Bio.
, vol.2
, pp. 307
-
-
Rosenfeld, S.1
Kapetanovic, I.2
-
62
-
-
47649114879
-
Origins of stochasticity and burstiness in high-dimensional biochemical networks
-
Rosenfeld S. Origins of stochasticity and burstiness in high-dimensional biochemical networks. EURASIP J. Bioinform. Syst. Biol. 2009.
-
(2009)
EURASIP J. Bioinform. Syst. Biol.
-
-
Rosenfeld, S.1
-
63
-
-
35348898041
-
Stochastic cooperativity in non-linear dynamics of genetic regulatory networks
-
Rosenfeld S. Stochastic cooperativity in non-linear dynamics of genetic regulatory networks. Math. Biosci. 2007, 210:121.
-
(2007)
Math. Biosci.
, vol.210
, pp. 121
-
-
Rosenfeld, S.1
-
64
-
-
33845925346
-
Stochastic oscillations in genetic regulatory networks
-
Rosenfeld S. Stochastic oscillations in genetic regulatory networks. EURASIP J. Bioinform. Syst. Biol. 2006, 1.
-
(2006)
EURASIP J. Bioinform. Syst. Biol.
, pp. 1
-
-
Rosenfeld, S.1
-
65
-
-
77955481403
-
Stochastic oscillations in genetic regulatory networks. applications to microarray experiment
-
Physica-Verlag, A. Rizzi, M. Vichi (Eds.)
-
Rosenfeld S. Stochastic oscillations in genetic regulatory networks. applications to microarray experiment. COMPSTAT-2006 2006, 1609-1618. Physica-Verlag. A. Rizzi, M. Vichi (Eds.).
-
(2006)
COMPSTAT-2006
, pp. 1609-1618
-
-
Rosenfeld, S.1
-
66
-
-
79958791734
-
Why do high-dimensional networks seem to be stable? A reflection on stochasticity of dynamically unstable nonlinear systems
-
University of Heidelberg, Heidelberg, R. Gauges, U. Kummer, J. Pahle, P. Willy (Eds.)
-
Rosenfeld S. Why do high-dimensional networks seem to be stable? A reflection on stochasticity of dynamically unstable nonlinear systems. Fifth Workshop on Computation of Biochemical Pathways and Genetic Networks 2008, 101-112. University of Heidelberg, Heidelberg. R. Gauges, U. Kummer, J. Pahle, P. Willy (Eds.).
-
(2008)
Fifth Workshop on Computation of Biochemical Pathways and Genetic Networks
, pp. 101-112
-
-
Rosenfeld, S.1
-
67
-
-
0028328719
-
Transcription of individual genes in eukaryotic cells occurs randomly and infrequently
-
Ross I.L., Browne C.M., Hume D.A. Transcription of individual genes in eukaryotic cells occurs randomly and infrequently. Immunol. Cell Biol. 1994, 72:177.
-
(1994)
Immunol. Cell Biol.
, vol.72
, pp. 177
-
-
Ross, I.L.1
Browne, C.M.2
Hume, D.A.3
-
68
-
-
84980167952
-
A suprasystem of probability distributions
-
Savageau M.A. A suprasystem of probability distributions. Biometrical. J. 1982, 24:323.
-
(1982)
Biometrical. J.
, vol.24
, pp. 323
-
-
Savageau, M.A.1
-
69
-
-
0015502817
-
A possible role in the regulation of primary animation for a complex of glutamine: ketoglutarate amidotransferase and glutamate dehydrogenase in Escherichia coli, Biochem
-
Savageau M.A., Kotre A.M., Sakamoto N. A possible role in the regulation of primary animation for a complex of glutamine: ketoglutarate amidotransferase and glutamate dehydrogenase in Escherichia coli, Biochem. Biophys. Res. Commun. 1972, 48:41.
-
(1972)
Biophys. Res. Commun.
, vol.48
, pp. 41
-
-
Savageau, M.A.1
Kotre, A.M.2
Sakamoto, N.3
-
70
-
-
0014733809
-
Biochemical systems analysis. 3. Dynamic solutions using a power-law approximation
-
Savageau M.A. Biochemical systems analysis. 3. Dynamic solutions using a power-law approximation. J. Theor. Biol. 1970, 26:215.
-
(1970)
J. Theor. Biol.
, vol.26
, pp. 215
-
-
Savageau, M.A.1
-
71
-
-
0014649230
-
Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions
-
Savageau M.A. Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions. J. Theor. Biol. 1969, 25:365.
-
(1969)
J. Theor. Biol.
, vol.25
, pp. 365
-
-
Savageau, M.A.1
-
72
-
-
0014658880
-
Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation
-
Savageau M.A. Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation. J. Theor. Biol. 1969, 25:370.
-
(1969)
J. Theor. Biol.
, vol.25
, pp. 370
-
-
Savageau, M.A.1
-
73
-
-
0016145568
-
Comparison of classical and autogenous systems of regulation in inducible operons
-
Savageau M.A. Comparison of classical and autogenous systems of regulation in inducible operons. Nature 1974, 252:546.
-
(1974)
Nature
, vol.252
, pp. 546
-
-
Savageau, M.A.1
-
74
-
-
0016154164
-
Genetic regulatory mechanisms and the ecological niche of Escherichia coli
-
Savageau M.A. Genetic regulatory mechanisms and the ecological niche of Escherichia coli. Proc. Natl. Acad. Sci. U.S. A. 1974, 71:2453.
-
(1974)
Proc. Natl. Acad. Sci. U.S. A.
, vol.71
, pp. 2453
-
-
Savageau, M.A.1
-
75
-
-
0016201107
-
Optimal design of feedback control by inhibition
-
Savageau M.A. Optimal design of feedback control by inhibition. J. Mol. Evol. 1974, 4:139.
-
(1974)
J. Mol. Evol.
, vol.4
, pp. 139
-
-
Savageau, M.A.1
-
76
-
-
0015103748
-
Concepts relating the behavior of biochemical systems to their underlying molecular properties
-
Savageau M.A. Concepts relating the behavior of biochemical systems to their underlying molecular properties. Arch. Biochem. Biophys. 1971, 145:612.
-
(1971)
Arch. Biochem. Biophys.
, vol.145
, pp. 612
-
-
Savageau, M.A.1
-
77
-
-
0015231849
-
Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems
-
Savageau M.A. Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems. Nature 1971, 229:542.
-
(1971)
Nature
, vol.229
, pp. 542
-
-
Savageau, M.A.1
-
78
-
-
0342349799
-
Recasting nonlinear differential equations as S-Systems: a canonical nonlinear form
-
Savageau M.A., Voit E.O. Recasting nonlinear differential equations as S-Systems: a canonical nonlinear form. Math. Biosci. 1987, 87:83.
-
(1987)
Math. Biosci.
, vol.87
, pp. 83
-
-
Savageau, M.A.1
Voit, E.O.2
-
79
-
-
0001591382
-
Finding multiple roots of nonlinear algebraic equations using S-System methodology
-
Savageau M.A. Finding multiple roots of nonlinear algebraic equations using S-System methodology. Appl. Math. Comput. 1993, 55:187.
-
(1993)
Appl. Math. Comput.
, vol.55
, pp. 187
-
-
Savageau, M.A.1
-
80
-
-
0010915160
-
Growth of complex systems can be related to the properties of their underlying determinants
-
Savageau M.A. Growth of complex systems can be related to the properties of their underlying determinants. Proc. Natl. Acad. Sci. U.S. A. 1979, 76:5413.
-
(1979)
Proc. Natl. Acad. Sci. U.S. A.
, vol.76
, pp. 5413
-
-
Savageau, M.A.1
-
81
-
-
0014749402
-
Repression of the threonine synthetase system in Escherichia coli
-
Savageau M.A., Steward J.P. Repression of the threonine synthetase system in Escherichia coli. Arch. Biochem. Biophys. 1970, 137:181.
-
(1970)
Arch. Biochem. Biophys.
, vol.137
, pp. 181
-
-
Savageau, M.A.1
Steward, J.P.2
-
82
-
-
0021777396
-
Mathematics of organizationally complex systems
-
Savageau M.A. Mathematics of organizationally complex systems. Biomed. Biochim. Acta 1985, 44:839.
-
(1985)
Biomed. Biochim. Acta
, vol.44
, pp. 839
-
-
Savageau, M.A.1
-
83
-
-
0016770391
-
Significance of autogenously regulated and constitutive synthesis of regulatory proteins in repressible biosynthetic systems
-
Savageau M.A. Significance of autogenously regulated and constitutive synthesis of regulatory proteins in repressible biosynthetic systems. Nature 1975, 258:208.
-
(1975)
Nature
, vol.258
, pp. 208
-
-
Savageau, M.A.1
-
84
-
-
0033669189
-
A network of protein-protein interactions in yeast
-
Schwikowski B., Uetz P., Fields S. A network of protein-protein interactions in yeast. Nat. Biotechnol. 2000, 18:1257.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1257
-
-
Schwikowski, B.1
Uetz, P.2
Fields, S.3
-
85
-
-
33745711647
-
Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks
-
Scott M., Ingalls B., Kaern M. Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks. Chaos 2006, 16:026107.
-
(2006)
Chaos
, vol.16
, pp. 026107
-
-
Scott, M.1
Ingalls, B.2
Kaern, M.3
-
86
-
-
70350461889
-
Revisiting the central dogma in the 21st century
-
Shapiro J.A. Revisiting the central dogma in the 21st century. Ann. N. Y. Acad. Sci. 2009, 1178:6.
-
(2009)
Ann. N. Y. Acad. Sci.
, vol.1178
, pp. 6
-
-
Shapiro, J.A.1
-
88
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr S.S., Milo R., Mangan S., Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 2002, 31:64.
-
(2002)
Nat. Genet.
, vol.31
, pp. 64
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
89
-
-
41749091787
-
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
-
e65
-
Shivaswamy S., et al. Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol. 2008, 6. e65.
-
(2008)
PLoS Biol.
, vol.6
-
-
Shivaswamy, S.1
-
90
-
-
0000058258
-
Global stability of deficiency zero chemical networks
-
Siegel D., Chen Y. Global stability of deficiency zero chemical networks. Canad. Appl. Math. Quart. 1994, 2:413.
-
(1994)
Canad. Appl. Math. Quart.
, vol.2
, pp. 413
-
-
Siegel, D.1
Chen, Y.2
-
91
-
-
10044223573
-
Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential
-
Slutsky M., Mirny L.A. Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential. Biophys. J. 2004, 87:4021.
-
(2004)
Biophys. J.
, vol.87
, pp. 4021
-
-
Slutsky, M.1
Mirny, L.A.2
-
92
-
-
80051666164
-
-
Protein-DNA Interaction, Random Walk and Polymer Statistics, PhD thesis, MIT, Physics Dpt
-
Slutsky M., Protein-DNA Interaction, Random Walk and Polymer Statistics, PhD thesis, MIT, Physics Dpt, 2005.
-
(2005)
-
-
Slutsky, M.1
-
93
-
-
0034524531
-
Somatic mutation theory of carcinogenesis: why it should be dropped and replaced
-
Sonnenschein C., Soto A.M. Somatic mutation theory of carcinogenesis: why it should be dropped and replaced. Mol. Carcinog. 2000, 29:205.
-
(2000)
Mol. Carcinog.
, vol.29
, pp. 205
-
-
Sonnenschein, C.1
Soto, A.M.2
-
95
-
-
0024673591
-
Strategies for representing metabolic pathways within biochemical systems theory: reversible pathways
-
Sorribas A., Savageau M.A. Strategies for representing metabolic pathways within biochemical systems theory: reversible pathways. Math. Biosci. 1989, 94:239.
-
(1989)
Math. Biosci.
, vol.94
, pp. 239
-
-
Sorribas, A.1
Savageau, M.A.2
-
96
-
-
77954190195
-
Computational models of metabolism: stability and regulation in metabolic networks
-
Steuer R., Junker B. Computational models of metabolism: stability and regulation in metabolic networks. Adv. Chem. Phys. 2009, 142:105-252.
-
(2009)
Adv. Chem. Phys.
, vol.142
, pp. 105-252
-
-
Steuer, R.1
Junker, B.2
-
98
-
-
0035826155
-
Exploring complex networks
-
Strogatz S.H. Exploring complex networks. Nature 2001, 410:268.
-
(2001)
Nature
, vol.410
, pp. 268
-
-
Strogatz, S.H.1
-
99
-
-
0014964695
-
RNA-dependent DNA polymerase in virions of Rous sarcoma virus
-
Temin H.M., Mizutani S. RNA-dependent DNA polymerase in virions of Rous sarcoma virus. Nature 1970, 226:1211.
-
(1970)
Nature
, vol.226
, pp. 1211
-
-
Temin, H.M.1
Mizutani, S.2
-
102
-
-
33749538696
-
Approximation of dynamical systems using S-Systems theory: application to biological systems
-
Tournier L. Approximation of dynamical systems using S-Systems theory: application to biological systems. International Symposium on Symbolic and Algebraic Computations 2005, 317-324.
-
(2005)
International Symposium on Symbolic and Algebraic Computations
, pp. 317-324
-
-
Tournier, L.1
-
103
-
-
33745656175
-
Characterizing disease states from topological properties of transcriptional regulatory networks
-
Tuck D.P., Kluger H.M., Kluger Y. Characterizing disease states from topological properties of transcriptional regulatory networks. BMC Bioinform. 2006, 7:236.
-
(2006)
BMC Bioinform.
, vol.7
, pp. 236
-
-
Tuck, D.P.1
Kluger, H.M.2
Kluger, Y.3
-
105
-
-
0023661067
-
Accuracy of alternative representations for integrated biochemical systems
-
Voit E.O., Savageau M.A. Accuracy of alternative representations for integrated biochemical systems. Biochemistry 1987, 26:6869.
-
(1987)
Biochemistry
, vol.26
, pp. 6869
-
-
Voit, E.O.1
Savageau, M.A.2
-
106
-
-
0022687590
-
Equivalence between S-Systems and volterra systems
-
Voit E.O., Savageau M.A. Equivalence between S-Systems and volterra systems. Math. Biosci. 1986, 78:41.
-
(1986)
Math. Biosci.
, vol.78
, pp. 41
-
-
Voit, E.O.1
Savageau, M.A.2
-
108
-
-
33746649820
-
Single molecule measurements of repressor protein 1D diffusion on DNA
-
Wang Y.M., Austin R.H., Cox E.C. Single molecule measurements of repressor protein 1D diffusion on DNA. Phys. Rev. Lett. 2006, 97:048302.
-
(2006)
Phys. Rev. Lett.
, vol.97
, pp. 048302
-
-
Wang, Y.M.1
Austin, R.H.2
Cox, E.C.3
-
109
-
-
45449110775
-
SYCAMORE - a systems biology computational analysis and modeling research environment
-
Weidemann A., et al. SYCAMORE - a systems biology computational analysis and modeling research environment. Bioinformatics 2008, 24:1463.
-
(2008)
Bioinformatics
, vol.24
, pp. 1463
-
-
Weidemann, A.1
-
110
-
-
84980078034
-
The unreasonable effectiveness of mathematics in the natural sciences
-
Wigner E. The unreasonable effectiveness of mathematics in the natural sciences. Comm. Pure Appl. Math. 1960, 13.
-
(1960)
Comm. Pure Appl. Math.
, vol.13
-
-
Wigner, E.1
-
111
-
-
33645033645
-
Probing gene expression in live cells, one protein molecule at a time
-
Yu J., Xiao J., Ren X., Lao K., Xie X.S. Probing gene expression in live cells, one protein molecule at a time. Science 2006, 311:1600.
-
(2006)
Science
, vol.311
, pp. 1600
-
-
Yu, J.1
Xiao, J.2
Ren, X.3
Lao, K.4
Xie, X.S.5
-
112
-
-
0037787230
-
Ensemble method in the theory of reversibility
-
Zwanzig R. Ensemble method in the theory of reversibility. J. Chem. Phys. 1960, 33:1338.
-
(1960)
J. Chem. Phys.
, vol.33
, pp. 1338
-
-
Zwanzig, R.1
|