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Volumn 15, Issue 2, 2004, Pages 303-313

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms

Author keywords

[No Author keywords available]

Indexed keywords

GALACTOSE; GLUCOSE;

EID: 3242726930     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2004.06.004     Document Type: Article
Times cited : (200)

References (38)
  • 1
    • 0035196663 scopus 로고    scopus 로고
    • The target of rapamycin signaling pathway regulates mRNA turnover in the yeast Saccharomyces cerevisiae
    • Albig A.R., Decker C.J. The target of rapamycin signaling pathway regulates mRNA turnover in the yeast Saccharomyces cerevisiae. Mol. Biol. Cell. 12:2001;3428-3438
    • (2001) Mol. Biol. Cell , vol.12 , pp. 3428-3438
    • Albig, A.R.1    Decker, C.J.2
  • 2
    • 0034100041 scopus 로고    scopus 로고
    • Glucose depletion rapidly inhibits translation initiation in yeast
    • Ashe M.P., De Long S.K., Sachs A.B. Glucose depletion rapidly inhibits translation initiation in yeast. Mol. Biol. Cell. 11:2000;833-848
    • (2000) Mol. Biol. Cell , vol.11 , pp. 833-848
    • Ashe, M.P.1    De Long, S.K.2    Sachs, A.B.3
  • 3
    • 0030917088 scopus 로고    scopus 로고
    • Transcriptional termination signals for RNA polymerase II in fission yeast
    • Birse C.E., Lee B.A., Hansen K., Proudfoot N.I. Transcriptional termination signals for RNA polymerase II in fission yeast. EMBO J. 16:1997;3633-3643
    • (1997) EMBO J. , vol.16 , pp. 3633-3643
    • Birse, C.E.1    Lee, B.A.2    Hansen, K.3    Proudfoot, N.I.4
  • 4
    • 0026012220 scopus 로고
    • Aromatic amino acid biosynthesis in the yeast Saccharomyces cerevisiae: A model system for the regulation of a eukaryotic biosynthetic pathway
    • Braus G.H. Aromatic amino acid biosynthesis in the yeast Saccharomyces cerevisiae. a model system for the regulation of a eukaryotic biosynthetic pathway Microbiol. Rev. 55:1991;349-370
    • (1991) Microbiol. Rev. , vol.55 , pp. 349-370
    • Braus, G.H.1
  • 5
    • 0038402506 scopus 로고    scopus 로고
    • Computational modeling and experimental analysis of non-sense-mediated decay in yeast
    • Cao D., Parker R. Computational modeling and experimental analysis of non-sense-mediated decay in yeast. Cell. 113:2003;533-545
    • (2003) Cell , vol.113 , pp. 533-545
    • Cao, D.1    Parker, R.2
  • 6
    • 0030058701 scopus 로고    scopus 로고
    • Genetic analysis of glucose regulation in Saccharomyces cerevisiae: Control of transcription versus mRNA turnover
    • Cereghino G.P., Scheffler I.E. Genetic analysis of glucose regulation in Saccharomyces cerevisiae. control of transcription versus mRNA turnover EMBO J. 15:1996;363-374
    • (1996) EMBO J. , vol.15 , pp. 363-374
    • Cereghino, G.P.1    Scheffler, I.E.2
  • 7
    • 0025962218 scopus 로고
    • Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro
    • Edwards A.M., Kane C.M., Young R.A., Kornberg R.D. Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro. J. Biol. Chem. 266:1991;71-75
    • (1991) J. Biol. Chem. , vol.266 , pp. 71-75
    • Edwards, A.M.1    Kane, C.M.2    Young, R.A.3    Kornberg, R.D.4
  • 9
    • 0037370054 scopus 로고    scopus 로고
    • In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes
    • French S.L., Osheim Y.N., Cioci F., Nomura M., Beyer A.L. In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes. Mol. Cell. Biol. 23:2003;1558-1568
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 1558-1568
    • French, S.L.1    Osheim, Y.N.2    Cioci, F.3    Nomura, M.4    Beyer, A.L.5
  • 11
    • 0035108235 scopus 로고    scopus 로고
    • A hierarchical unsupervised growing neural network for clustering gene expression patterns
    • Herrero J., Valencia A., Dopazo J. A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics. 17:2001;126-136
    • (2001) Bioinformatics , vol.17 , pp. 126-136
    • Herrero, J.1    Valencia, A.2    Dopazo, J.3
  • 13
    • 0025267840 scopus 로고
    • Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae
    • Herrick D., Parker R., Jacobson A. Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 10:1990;2269-2284
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 2269-2284
    • Herrick, D.1    Parker, R.2    Jacobson, A.3
  • 14
    • 0033067906 scopus 로고    scopus 로고
    • Nuclear run-on assays: Assessing transcription by measuring density of engaged RNA polymerases
    • Hirayoshi K., Lis J.T. Nuclear run-on assays. assessing transcription by measuring density of engaged RNA polymerases Methods Enzymol. 304:1999;351-362
    • (1999) Methods Enzymol. , vol.304 , pp. 351-362
    • Hirayoshi, K.1    Lis, J.T.2
  • 16
    • 0029952311 scopus 로고    scopus 로고
    • Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae
    • Iyer V., Struhl K. Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA. 93:1996;5208-5212
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5208-5212
    • Iyer, V.1    Struhl, K.2
  • 17
    • 0034712889 scopus 로고    scopus 로고
    • Glucose starvation induces a drastic reduction in the rates of both transcription and degradation of mRNA in yeast
    • Jona G., Choder M., Gileadi O. Glucose starvation induces a drastic reduction in the rates of both transcription and degradation of mRNA in yeast. Biochim. Biophys. Acta. 1491:2000;37-48
    • (2000) Biochim. Biophys. Acta , vol.1491 , pp. 37-48
    • Jona, G.1    Choder, M.2    Gileadi, O.3
  • 18
    • 0037370460 scopus 로고    scopus 로고
    • Life after transcription: Revisiting the fate of messenger RNA
    • Khodursky A.B., Bernstein J.A. Life after transcription. revisiting the fate of messenger RNA Trends Genet. 19:2003;113-115
    • (2003) Trends Genet. , vol.19 , pp. 113-115
    • Khodursky, A.B.1    Bernstein, J.A.2
  • 19
    • 0035137667 scopus 로고    scopus 로고
    • Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a non-fermentable carbon source
    • Kuhn K.M., DeRisi J.L., Brown P.O., Sarnow P. Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a non-fermentable carbon source. Mol. Cell. Biol. 21:2001;916-927
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 916-927
    • Kuhn, K.M.1    Derisi, J.L.2    Brown, P.O.3    Sarnow, P.4
  • 20
    • 0036329026 scopus 로고    scopus 로고
    • Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries
    • Legen J., Kemp S., Krause K., Profanter B., Herrmann R.G., Maier R.M. Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries. Plant J. 31:2002;171-188
    • (2002) Plant J. , vol.31 , pp. 171-188
    • Legen, J.1    Kemp, S.2    Krause, K.3    Profanter, B.4    Herrmann, R.G.5    Maier, R.M.6
  • 21
    • 0032788547 scopus 로고    scopus 로고
    • Transcriptional elements involved in the repression of ribosomal protein synthesis
    • Li B., Nierras C.R., Warner J.R. Transcriptional elements involved in the repression of ribosomal protein synthesis. Mol. Cell. Biol. 19:1999;5393-5404
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 5393-5404
    • Li, B.1    Nierras, C.R.2    Warner, J.R.3
  • 22
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb J.D., Liu X., Botstein D., Brown P.O. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28:2001;327-334
    • (2001) Nat. Genet. , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 23
    • 0036844771 scopus 로고    scopus 로고
    • The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli
    • Lilly J.W., Maul J.E., Stern D.B. The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli. Plant Cell. 14:2002;2681-2706
    • (2002) Plant Cell , vol.14 , pp. 2681-2706
    • Lilly, J.W.1    Maul, J.E.2    Stern, D.B.3
  • 24
    • 0032459466 scopus 로고    scopus 로고
    • Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation
    • Lis J.T. Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation. Cold Spring Harb. Symp. Quant. Biol. 63:1998;347-356
    • (1998) Cold Spring Harb. Symp. Quant. Biol. , vol.63 , pp. 347-356
    • Lis, J.T.1
  • 25
    • 0030605738 scopus 로고    scopus 로고
    • Sudden depletion of carbon source blocks translation, but not transcription, in the yeast Saccharomyces cerevisiae
    • Martínez-Pastor M.T., Estruch F. Sudden depletion of carbon source blocks translation, but not transcription, in the yeast Saccharomyces cerevisiae. FEBS Lett. 390:1996;319-322
    • (1996) FEBS Lett. , vol.390 , pp. 319-322
    • Martínez-Pastor, M.T.1    Estruch, F.2
  • 28
    • 0032915417 scopus 로고    scopus 로고
    • Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae
    • Powers T., Walter P. Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae. Mol. Biol. Cell. 10:1999;987-1000
    • (1999) Mol. Biol. Cell , vol.10 , pp. 987-1000
    • Powers, T.1    Walter, P.2
  • 31
    • 0026437552 scopus 로고
    • Nested chromosomal fragmentation in yeast using the meganuclease I-Sce I: A new method for physical mapping of eukaryotic genomes
    • Thierry A., Dujon B. Nested chromosomal fragmentation in yeast using the meganuclease I-Sce I. a new method for physical mapping of eukaryotic genomes Nucleic Acids Res. 21:1992;5625-5631
    • (1992) Nucleic Acids Res. , vol.21 , pp. 5625-5631
    • Thierry, A.1    Dujon, B.2
  • 32
    • 0034964525 scopus 로고    scopus 로고
    • Regulated ARE-mediated mRNA decay in Saccharomyces cerevisiae
    • Vasudevan S., Peltz S.W. Regulated ARE-mediated mRNA decay in Saccharomyces cerevisiae. Mol. Cell. 7:2001;1191-1200
    • (2001) Mol. Cell , vol.7 , pp. 1191-1200
    • Vasudevan, S.1    Peltz, S.W.2
  • 37
    • 0033965777 scopus 로고    scopus 로고
    • Differential post-transcriptional regulation of yeast mRNAs in response to high and low glucose concentrations
    • Yin Z., Hatton L., Brown A.J. Differential post-transcriptional regulation of yeast mRNAs in response to high and low glucose concentrations. Mol. Microbiol. 35:2000;553-565
    • (2000) Mol. Microbiol. , vol.35 , pp. 553-565
    • Yin, Z.1    Hatton, L.2    Brown, A.J.3
  • 38
    • 0038349351 scopus 로고    scopus 로고
    • Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs
    • Yin Z., Wilson S., Hauser N.C., Tournu H., Hoheisel J.D., Brown A.J. Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs. Mol. Microbiol. 48:2003;713-724
    • (2003) Mol. Microbiol. , vol.48 , pp. 713-724
    • Yin, Z.1    Wilson, S.2    Hauser, N.C.3    Tournu, H.4    Hoheisel, J.D.5    Brown, A.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.