Use of RecA fusion proteins to induce genomic modifications in zebrafish

Nucleic Acids Research

Volumn 39, Issue 10, 2011, Pages 4166-4179

  Liao, Hsin Kai ^a   Essner, Jeffrey J ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HYBRID PROTEIN; RECA GAL4 PROTEIN; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; RECA PROTEIN;

ANIMAL TISSUE; ARTICLE; CHROMOSOME DELETION; CONTROLLED STUDY; DNA BINDING MOTIF; DNA MODIFICATION; DNA STRUCTURE; EMBRYO; ENZYME ACTIVITY; GENE INSERTION; GENE SEQUENCE; HETEROZYGOSITY LOSS; NONHUMAN; NUCLEAR LOCALIZATION SIGNAL; PRIORITY JOURNAL; PROTEIN DNA BINDING; ZEBRA FISH; ANIMAL; ANIMAL EMBRYO; CHEMISTRY; EYE COLOR; GENE TARGETING; GENETICS; GENOME; HISTOLOGY; INJECTION; METABOLISM; MUTATION; PRENATAL DEVELOPMENT; REPORTER GENE;

BACTERIA (MICROORGANISMS); DANIO RERIO;

ANIMALS; DNA, SINGLE-STRANDED; DNA-BINDING PROTEINS; EMBRYO, NONMAMMALIAN; EYE COLOR; GENE TARGETING; GENES, REPORTER; GENOME; INJECTIONS; LOSS OF HETEROZYGOSITY; MUTATION; NUCLEAR LOCALIZATION SIGNALS; REC A RECOMBINASES; RECOMBINANT FUSION PROTEINS; ZEBRAFISH;

EID: 79961182022     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq1363     Document Type: Article

References (36)

1. McGrew, D.A. and Knight, K.L. (2003) Molecular design and functional organization of the RecA protein. Crit. Rev. Biochem. Mol. Biol., 38, 385-432. (Pubitemid 38117382)
2. Radding, C.M., Shibata, T., DasGupta, C., Cunningham, R.P. and Osber, L. (1981) Kinetics and topology of homologous pairing promoted by Escherichia coli recA-gene protein. Cold Spring Harb. Symp. Quant. Biol., 45(Pt 1), 385-390.
3. Seitz, E.M., Brockman, J.P., Sandler, S.J., Clark, A.J. and Kowalczykowski, S.C. (1998) RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange. Genes Dev., 12, 1248-1253. (Pubitemid 28213400)
4. Cox, M.M. (1999) Recombinational DNA repair in bacteria and the RecA protein. Prog. Nucleic Acid Res. Mol. Biol., 63, 311-366.
5. Campbell, M.J. and Davis, R.W. (1999) On the in vivo function of the RecA ATPase. J. Mol. Biol., 286, 437-445. (Pubitemid 29090161)
6. Reiss, B., Klemm, M., Kosak, H. and Schell, J. (1996) RecA protein stimulates homologous recombination in plants. Proc. Natl Acad. Sci. USA, 93, 3094-3098. (Pubitemid 26114369)
7. Reiss, B., Schubert, I., Kopchen, K., Wendeler, E., Schell, J. and Puchta, H. (2000) RecA stimulates sister chromatid exchange and the fidelity of double-strand break repair, but not gene targeting, in plants transformed by Agrobacterium. Proc. Natl Acad. Sci. USA, 97, 3358-3363. (Pubitemid 30183307)
8. Shcherbakova, O.G., Lanzov, V.A., Ogawa, H. and Filatov, M.V. (2000) Overexpression of bacterial RecA protein stimulates homologous recombination in somatic mammalian cells. Mutat. Res., 459, 65-71. (Pubitemid 30085468)
9. Yanez, R.J. and Porter, A.C. (1999) Gene targeting is enhanced in human cells overexpressing hRAD51. Gene Ther., 6, 1282-1290. (Pubitemid 29359022)
10. Cui, Z., Yang, Y., Kaufman, C.D., Agalliu, D. and Hackett, P.B. (2003) RecA-mediated, targeted mutagenesis in zebrafish. Mar. Biotechnol., 5, 174-184.
11. Takahashi, N. and Dawid, I.B. (2005) Characterization of zebrafish Rad52 and replication protein A for oligonucleotide-mediated mutagenesis. Nucleic Acids Res., 33, e120.
12. Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B. and Schilling, T.F. (1995) Stages of embryonic development of the zebrafish. Dev. Dyn., 203, 253-310.
13. Uhlin, B.E. and Clark, A.J. (1981) Overproduction of the Escherichia coli recA protein without stimulation of its proteolytic activity. J. Bacteriol., 148, 386-390. (Pubitemid 12206450)
14. Keller, M., Harbottle, R.P., Perouzel, E., Colin, M., Shah, I., Rahim, A., Vaysse, L., Bergau, A., Moritz, S., Brahimi-Horn, C. et al. (2003) Nuclear localisation sequence templated nonviral gene delivery vectors: investigation of intracellular trafficking events of LMD and LD vector systems. Chembiochem, 4, 286-298. (Pubitemid 36505199)
15. Petzold, A.M., Balciunas, D., Sivasubbu, S., Clark, K.J., Bedell, V.M., Westcot, S.E., Myers, S.R., Moulder, G.L., Thomas, M.J. and Ekker, S.C. (2009) Nicotine response genetics in the zebrafish. Proc. Natl Acad. Sci. USA, 106, 18662-18667.
16. Streisinger, G., Coale, F., Taggart, C., Walker, C. and Grunwald, D.J. (1989) Clonal origins of cells in the pigmented retina of the zebrafish eye. Dev. Biol., 131, 60-69. (Pubitemid 19032125)
17. Moore, J.L., Rush, L.M., Breneman, C., Mohideen, M.A. and Cheng, K.C. (2006) Zebrafish genomic instability mutants and cancer susceptibility. Genetics, 174, 585-600. (Pubitemid 44656452)
18. Lamason, R.L., Mohideen, M.A., Mest, J.R., Wong, A.C., Norton, H.L., Aros, M.C., Jurynec, M.J., Mao, X., Humphreville, V.R., Humbert, J.E. et al. (2005) SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science, 310, 1782-1786. (Pubitemid 41814374)
19. Simonson, T., Kubista, M., Sjoback, R., Ryberg, H. and Takahashi, M. (1994) Properties of RecA-oligonucleotide complexes. J. Mol. Recognit., 7, 199-206. (Pubitemid 2157717)
20. Dames, S., Margraf, R.L., Pattison, D.C., Wittwer, C.T. and Voelkerding, K.V. (2007) Characterization of aberrant melting peaks in unlabeled probe assays. J. Mol. Diagn., 9, 290-296. (Pubitemid 47305064)
21. Talbot, W.S., Trevarrow, B., Halpern, M.E., Melby, A.E., Farr, G., Postlethwait, J.H., Jowett, T., Kimmel, C.B. and Kimelman, D. (1995) A homeobox gene essential for zebrafish notochord development. Nature, 378, 150-157.
22. McGrail, M., Batz, L., Noack, K., Pandey, S., Huang, Y., Gu, X. and Essner, J.J. (2010) Expression of the zebrafish CD133/prominin1 genes in cellular proliferation zones in the embryonic central nervous system and sensory organs. Dev. Dyn., 239, 1849-1857.
23. Liang, D., Xu, X., Chin, A.J., Balasubramaniyan, N.V., Teo, M.A., Lam, T.J., Weinberg, E.S. and Ge, R. (1998) Cloning and characterization of vascular endothelial growth factor (VEGF) from zebrafish, Danio rerio. Biochim. Biophys. Acta, 1397, 14-20. (Pubitemid 28183869)
24. Hagmann, M., Bruggmann, R., Xue, L., Georgiev, O., Schaffner, W., Rungger, D., Spaniol, P. and Gerster, T. (1998) Homologous recombination and DNA-end joining reactions in zygotes and early embryos of zebrafish (Danio rerio) and Drosophila melanogaster. Biol. Chem., 379, 673-681. (Pubitemid 28327566)
25. Meng, X., Noyes, M.B., Zhu, L.J., Lawson, N.D. and Wolfe, S.A. (2008) Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases. Nat. Biotechnol., 26, 695-701. (Pubitemid 351809594)
26. Doyon, Y., McCammon, J.M., Miller, J.C., Faraji, F., Ngo, C., Katibah, G.E., Amora, R., Hocking, T.D., Zhang, L., Rebar, E.J. et al. (2008) Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nat. Biotechnol., 26, 702-708. (Pubitemid 351809597)
27. Liu, Z.J., Moav, B., Faras, A.J., Guise, K.S., Kapuscinski, A.R. and Hackett, P.B. (1990) Development of expression vectors for transgenic fish. Biotechnology, 8, 1268-1272.
28. Michel, B., Flores, M.J., Viguera, E., Grompone, G., Seigneur, M. and Bidnenko, V. (2001) Rescue of arrested replication forks by homologous recombination. Proc. Natl Acad. Sci. USA, 98, 8181-8188. (Pubitemid 32678011)
29. Aguilera, A. and Gomez-Gonzalez, B. (2008) Genome instability: a mechanistic view of its causes and consequences. Nat. Rev. Genet., 9, 204-217. (Pubitemid 351271797)
30. Michel, B., Ehrlich, S.D. and Uzest, M. (1997) DNA double-strand breaks caused by replication arrest. EMBO J., 16, 430-438. (Pubitemid 27049398)
31. Feitsma, H., Akay, A. and Cuppen, E. (2008) Alkylation damage causes MMR-dependent chromosomal instability in vertebrate embryos. Nucleic Acids Res., 36, 4047-4056. (Pubitemid 351984820)
32. Imai, Y., Feldman, B., Schier, A.F. and Talbot, W.S. (2000) Analysis of chromosomal rearrangements induced by postmeiotic mutagenesis with ethylnitrosourea in zebrafish. Genetics, 155, 261-272. (Pubitemid 30257126)
33. Hong, G. and Kreuzer, K.N. (2003) Endonuclease cleavage of blocked replication forks: an indirect pathway of DNA damage from antitumor drug-topoisomerase complexes. Proc. Natl Acad. Sci. USA, 100, 5046-5051. (Pubitemid 36542655)
34. Boddy, M.N., Gaillard, P.H., McDonald, W.H., Shanahan, P., Yates, J.R. III and Russell, P. (2001) Mus81-Eme1 are essential components of a Holliday junction resolvase. Cell, 107, 537-548. (Pubitemid 33152788)
35. Michel, B. (2000) Replication fork arrest and DNA recombination. Trends Biochem. Sci., 25, 173-178. (Pubitemid 30195833)
36. Soares, B.S., Eguchi, K. and Frohman, L.A. (2005) Tumor deletion mapping on chromosome 11q13 in eight families with isolated familial somatotropinoma and in 15 sporadic somatotropinomas. J. Clin. Endocrinol. Metab., 90, 6580-6587. (Pubitemid 41759319)