Phylogenetic analysis of C, M, N, and U genomes nd their relationships with Triticum and other related genomes as revealed by LMW-GS genes at Glu-3 loci

Genome

Volumn 54, Issue 4, 2011, Pages 273-284

  Wang, Shunli ^a   Li, Xiaohui ^a   Wang, Ke ^a   Wang, Xiaozheng ^a   Li, Shanshan ^a   Zhang, Yanzhen ^a   Guo, Guangfang ^a   Zeller, Friedrich J ^b   Hsam, Sai L K ^b   Yan, Yueming ^a   Gustafson, Perry ^a  

^a CAPITAL NORMAL UNIVERSITY   (China)

^b TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

Aegilops; evolution; LMW GS genes; phylogeny; Triticum

Indexed keywords

AEGILOPS; AEGILOPS SPELTOIDES; AEGILOPS TAUSCHII; TRITICUM; TRITICUM AESTIVUM;

GLUTEN; GLUTENIN; PLANT DNA;

ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENOME; POACEAE; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; WHEAT;

BASE SEQUENCE; CLONING, MOLECULAR; DNA, PLANT; EVOLUTION, MOLECULAR; GENOME, PLANT; GLUTENS; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PHYLOGENY; POACEAE; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; TRITICUM;

EID: 79961005856     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g10-119     Document Type: Article

References (53)

1. Allaby R.G. Banerjee M. Brown T.A. 1999. Evolution of the high molecular weight glutenin loci of the A, B, D, and G genomes of wheat. Genome, 42 (2): 296-307. 10.1139/gen-42-2-296 10231962 (Pubitemid 29294139)
2. An X. Zhang Q. Yan Y. Li Q. Zhang Y. Wang A. 2006. Cloning and molecular characterization of three novel LMW-i glutenin subunit genes from cultivated einkorn (Triticum monococcum L.). Theor. Appl. Genet. 113 (3): 383-395. 10.1007/s00122-006-0299-x 16775696 (Pubitemid 44035028)
3. Appels R. Dvořák J. 1982. The wheat ribosomal DNA spacer region: its structure and variation in populations and among species. Theor. Appl. Genet. 63 (4): 337-348. 10.1007/BF00303905
4. Badaeva E.D. 2002. Evaluation of phylogenetic relationships between five polyploid Aegilops L. species of the U-genome cluster by means of chromosome analysis. Russ. J. Genet. 38 (6): 664-675. 10.1023/A:1016044001829 (Pubitemid 135704888)
5. Badaeva E.D. Friebe B. Gill B.S. 1996. Genome differentiation in Aegilops. 1. Distribution of highly repetitive DNA sequences on chromosomes of diploid species. Genome, 39 (2): 293-306. 10.1139/g96-040 18469894 (Pubitemid 126529662)
6. Badaeva E.D. Dedkova O.S. Koenig J. Bernard S. Bernard M. 2008. Analysis of introgression of Aegilops ventricosa Tausch. genetic material in a common wheat background using C-banding. Theor. Appl. Genet. 117 (5): 803-811. 10.1007/s00122-008-0821-4 18597067
7. Cassidy B.G. Dvořák J. Anderson O.D. 1998. The wheat low-molecular-weight glutenin genes: characterization of six new genes and progress in understanding gene family structure. Theor. Appl. Genet. 96 (6-7): 743-750. 10.1007/s001220050797 (Pubitemid 28326463)
8. Cuñado N. 1993. a. Genomic analysis in the genus Aegiops. I. Interspecific hybrids between tetraploid species sharing a common genome. Heredity, 70 (1): 9-15. 10.1038/hdy.1993.2
9. Cuñado N. 1993. b. Genomic analysis in the genus Aegiops. II. Interspecific hybrids between polyploidy species sharing two common genomes. Heredity, 70 (1): 16-21. 10.1038/hdy.1993.3
10. D'Ovidio R. Masci S. 2004. The low-molecular-weight glutenin subunits of wheat gluten. J. Cereal Sci. 39 (3): 321-339. 10.1016/j.jcs.2003.12.002 (Pubitemid 38836722)
11. m of Triticum monococcum and its recognition by the wheat Ph1 locus. Proc. Natl. Acad. Sci. U.S.A. 92 (14): 6645-6649. 10.1073/pnas.92.14.6645 11607556
12. Dvořák J. McGuire P.E. Cassidy B. 1988. Apparent sources of the A genomes of wheats inferred from polymorphism in abundance and restriction fragment length of repeated nucleotide sequences. Genome, 30: 680-689.
13. Dvořák J. Resta P. Kota R.S. 1990. Molecular evidence on the origin of wheat chromosomes 4A and 4B. Genome, 33: 30-39. (Pubitemid 20287286)
14. Dvořák J. Akhunov E.D. Akhunov A.R. Deal K.R. Luo M.C. 2006. Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat. Mol. Biol. Evol. 23 (7): 1386-1396. 10.1093/molbev/msl004 16675504 (Pubitemid 43992339)
15. Feldman M. 1966. Identification of unpaired chromosomes in F1 hybrids involving Triticum aestivum and T. timopheevii. Can. J. Genet. Cytol. 8: 144-151.
16. Fernández-Calván B. Orellana J. 1990. High molecular weight glutenin subunit variation in the Sitopsis section of Aegilops. Implications for the origin of the B genome of wheat. Heredity, 65 (3): 455-463. 10.1038/hdy.1990.117
17. Harberd N.P. Bartels D. Thompson R.D. 1985. Analysis of the gliadin multigene loci in bread wheat using nullisomic-tetrasomic lines. Mol. Gen. Genet. 198 (2): 234-242. 10.1007/BF00383001
18. Huang X.Q. Cloutier S. 2008. Molecular characterization and genomic organization of low molecular weight glutenin subunit genes at the Glu-3 loci in hexaploid wheat (Triticum aestivum L.). Theor. Appl. Genet. 116 (7): 953-966. 10.1007/s00122-008-0727-1 18305921
19. Huang S. Sirikhachornkit A. Su X. Faris J. Gill B. Haselkorn R. Gornicki P. 2002. Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum-Aegilops complex and the evolutionary history of polyploid wheat. Proc. Natl. Acad. Sci. U.S.A. 99 (12): 8133-8138. 10.1073/pnas.072223799 12060759 (Pubitemid 34651018)
20. Jiang C.X. Pei Y.H. Zhang Y.Z. Li X.H. Yao D.N. Yan Y.M. 2008. Molecular cloning and characterization of four novel LMW glutenin subunit genes from Aegilops longissima, Triticum dicoccoides and T. zhukovskyi. Hereditas, 145 (2): 92-98. 10.1111/j.0018-0661.2008.02035.x 18503711 (Pubitemid 351696300)
21. Kerby K. Kuspira J. 1986. The phylogeny of polyploidy wheats Triticum aestivum (bread wheat) and Triticum turgidum (macaroni wheat). Genome, 29: 722-737.
22. Kihara H. 1924. Cytologische und genetische Studien bei wichtigen Getreidearten mit besonderer Rücksicht auf das Verhalten der Chromosomen und die Sterilität in den Bastarden. Mem. Coll. Sci. Kyoto Imp. Univ. 1: 1-200.
23. Kihara, H. 1937. Genomanalyse bei Triticum und Aegilops VII. Mem. Cool. Agric. Kyoto Univ. 41.
24. Kimber G. Athwal R.S. 1972. A reassessment of the course of evolution of wheat. Proc. Natl. Acad. Sci. U.S.A. 69 (4): 912-915. 10.1073/pnas.69.4.912 16591976
25. Kimber, G., and Tsunewki, K. 1988. Genome symbols and plasma types in the wheat group. In Proceedings of the 7th International Wheat Genetics Symposium. Edited by T.E. Miller and R.M.D. Koebner. Bath Press, Cambridge, UK. pp.1209-1210.
26. Kumar S. Tamura K. Nei M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2): 150-163. 10.1093/bib/5.2.150 15260895
27. Lee Y.K. Ciaffi M. Appels R. Morell M.K. 1999. The low-molecular-weight glutenin subunit proteins of primitive wheat. II. The genes from A-genome species. Theor. Appl. Genet. 98 (1): 126-134. 10.1007/s001220051049 (Pubitemid 29167227)
28. Li X.H. Zhang Y.Z. Gao L.Y. Wang A.L. Ji K.M. He Z.H. 2007. Molecular cloning, heterologous expression, and phylogenetic analysis of a novel -type HMW glutenin subunit gene from the G genome of Triticum timopheevi. Genome, 50 (12): 1130-1140. 10.1139/G07-089 18059540
29. Li X.H. Wang A.L. Xiao Y.H. Yan Y.M. He Z.H. Appels R. 2008. a. Cloning and characterization of a novel low molecular weight glutenin subunit gene at the Glu-A3 locus from wild emmer wheat (Triticum turgidum L. var. dicoccoides). Euphytica, 159 (1-2): 181-190. 10.1007/s10681-007-9471-x (Pubitemid 350215714)
30. Li X.H. Ma W. Gao L.Y. Zhang Y.Z. Wang A.L. Ji K.M. 2008. b. A novel chimeric low molecular weight glutenin subunit gene from the wild relatives of wheat Aegilops kotschyi and Ae. juvenalis: evolution at the Glu-3 loci. Genetics, 180: 93-101. 10.1534/genetics.108.092403 18757939
31. Li X.H. Wang K. Wang S.L. Gao L.Y. Xie X.X. Hsam S.L.K. 2010. Molecular characterization and comparative transcriptional analysis of LMW-m type genes from wheat (Triticum aestivum L.) and Aegilops species. Theor. Appl. Genet. 121: 845-856. 10.1007/s00122-010-1354-1 20490445
32. Liu Z. Li D.Y. Zhang X.Y. 2007. Genetic relationships among five basic genomes St, E, A, B and D in Triticeae revealed by genomic Southern and in situ hybridization. J. Integr. Plant Biol. 49 (7): 1080-1086. 10.1111/j.1672-9072. 2007.00462.x (Pubitemid 47018551)
33. Lucas H. Jahier I. 1988. Phylogenetic relationships in some diploid species of Triticineae: cytogenetic analysis of interspecific hybrids. Theor. Appl. Genet. 75 (3): 498-502. 10.1007/BF00276756
34. Luo Z. Chen F.G. Feng D.S. Xia G.M. 2005. LMW-GS genes in Agropyron elongatum and their potential value in wheat breeding. Theor. Appl. Genet. 111 (2): 272-280. 10.1007/s00122-005-2021-9 15926075 (Pubitemid 41033761)
35. Maan, S.S., Sasakuma, T., and Ramanujam, S. 1978. Chromosome pairing relationships among the D and M genomes of Triticum and Aegilops species. In Proceedings of the 5th International Wheat Genetics Symposium Edited by S. Ramanujam. Indian Society of Genetics and Plant Breeding, New Delhi, India. pp.322-331.
36. Miller, T.E. 1987. Systematics and evolution. In Wheat breeding: its scientific basis. Edited by F.G.H. Lupton. Chapman and Hall, London. pp.1-30.
37. Murray M.G. Thompson W.F. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8 (19): 4321-4325. 10.1093/nar/8.19.4321 7433111
38. Ogihara Y. Tsunewaki K. 1988. Diversity and evolution of chloroplast DNA in Triticum and Aegilops as revealed by restriction fragment analysis. Theor. Appl. Genet. 76 (3): 321-332. 10.1007/BF00265331
39. Paux E. Sourdille P. Salse J. Saintenac C. Choulet F. Leroy P. 2008. A physical map of the 1-gigabase bread wheat chromosome 3B. Science, 322 (5898): 101-104. 10.1126/science.1161847 18832645
40. Payne P.I. 1987. Genetics of wheat storage proteins and the effect of allelic variation on breadmaking quality. Annu. Rev. Plant Physiol. 38 (1): 141-153. 10.1146/annurev.pp.38.060187.001041
41. Pei Y.H. Wang A.L. An X.L. Li X.H. Zhang Y.Z. Huang X.Q. Yan Y.M. 2007. Characterization and comparative analysis of three low molecular weight glutenin C-subunit genes isolated from Aegilops tauschii. Can. J. Plant Sci. 87: 273-280.
42. Petersen G. Seberg O. Yde M. Berthelsen K. 2006. Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum). Mol. Phylogenet. Evol. 39 (1): 70-82. 10.1016/j.ympev.2006.01.023 16504543
43. Sabelli P.A. Shewry P.R. 1991. Characterization and organization of gene families at the Gli-1 loci of bread and durum wheat by restriction fragment analysis. Theor. Appl. Genet. 83 (2): 209-216. 10.1007/BF00226253
44. Saitou N. Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (4): 406-425. 3447015
45. Sarkar P. Stebbins G.L. 1956. Morphological evidence concerning the origin of the B genome in wheat. Am. J. Bot. 43 (4): 297-304. 10.2307/2438947
46. u genomes of Aegilops. Wheat Inf. Serv. 60: 39.
47. Vanichanon A. Blake N.K. Sherman J.D. Talbert L.E. 2003. Multiple origins of allopolyploid Aegilops triuncialis. Theor. Appl. Genet. 106 (5): 804-810. 12647053 (Pubitemid 36599641)
48. Waines J.K. Barnhart D. 1992. Biosystematic research in Aegilops and Triticum. Hereditas, 116: 207-212.
49. Wang G.Z. Miyashita N.T. Tsunewaki K. 1997. Plasmon analyses of Triticum (wheat) and Aegilops: PCR-single-strand conformational polymorphism (PCR-SSCP) analyses of organellar DNAs. Proc. Natl. Acad. Sci. U.S.A. 94 (26): 14570-14577. 10.1073/pnas.94.26.14570 9405654 (Pubitemid 28041415)
50. m genomes of wheat. Plant Cell, 15 (5): 1186-1197. 10.1105/tpc.011023 12724543 (Pubitemid 36579977)
51. Yan Y. Hsam S.L.K. Yu J.Z. Jiang Y. Zeller F.J. 2003. Allelic variation of the HMW glutenin subunits in Aegilops tauschii accessions detected by sodium dodecyl sulphate (SDS-PAGE), acid polyacrylamide gel (A-PAGE) and capillary electrophoresis. Euphytica, 130 (3): 377-385. 10.1023/A:1023062316439 (Pubitemid 36536636)
52. Zhang Y.Z. Li X.H. Wang A.L. An X.L. Zhang Q. Pei Y.H. 2008. Novel x-type high-molecular-weight glutenin genes from Aegilops tauschii and their implications on the wheat origin and evolution mechanism of Glu-D1-1 proteins. Genetics, 178 (1): 23-33. 10.1534/genetics.107.077412 18202355 (Pubitemid 351398728)
53. Zhang M.Y. Wang K. Wang S.L. Li X.H. Zeller F.J. Hsam S.L.K. Yan Y.M. 2010. Molecular cloning, function prediction and phylogenetic analysis of LMW glutenin subunit genes in Triticum timopheevii (Zhuk.). Plant Breed. 129 (6): 622-629. 10.1111/j.1439-0523.2010.01768.x