Molecular characterization and phylogenetic analysis of a yak (Bos grunniens) κ-casein cDNA from lactating mammary gland

Molecular Biology Reports

Volumn 38, Issue 4, 2011, Pages 2711-2718

  Bai, W L ^a,b   Yin, R H ^a   Dou, Q L ^c   Jiang, W Q ^a   Zhao, S J ^d   Ma, Z J ^c   Luo, G B ^a   Zhao, Z H ^b  

^a SHENYANG AGRICULTURAL UNIVERSITY   (China)

^b JILIN UNIVERSITY   (China)

^c QINGHAI UNIVERSITY   (China)

^d BEIJING INSTITUTE OF BIOTECHNOLOGY   (China)

Author keywords

casein; CDNA; Phylogenetic analysis; Yak

Indexed keywords

COMPLEMENTARY DNA; KAPPA CASEIN; KAPPA CASEIN PRECURSOR PROTEIN; PROTEIN PRECURSOR; RNA; SIGNAL PEPTIDE; UNCLASSIFIED DRUG; CASEIN; PRIMER DNA;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; BUFFALO; CAMEL; CATTLE; CONTROLLED STUDY; DNA DETERMINATION; DNA ISOLATION; DNA SEQUENCE; FEMALE; GENETIC ANALYSIS; GENETIC ENGINEERING; GENOME SIZE; GOAT; HORSE; ISOELECTRIC POINT; LACTATION; MAMMARY GLAND; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PROTEIN ANALYSIS; RABBIT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SEQUENCE HOMOLOGY; SHEEP; SPECIES COMPOSITION; YAK; ANIMAL; CHEMISTRY; CLUSTER ANALYSIS; COMPARATIVE STUDY; GENETICS; MOLECULAR GENETICS; UDDER;

BOS; BOS GRUNNIENS; CAMELUS DROMEDARIUS; CAPRA HIRCUS; EQUIDAE; MAMMALIA; ORYCTOLAGUS CUNICULUS; OVIS ARIES;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CASEINS; CATTLE; CLONING, MOLECULAR; CLUSTER ANALYSIS; DNA PRIMERS; DNA, COMPLEMENTARY; FEMALE; LACTATION; MAMMARY GLANDS, ANIMAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 79960938730     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0414-6     Document Type: Article

References (52)

1. Zi XD, Lu H, Yin RH, Chen SW (2008) Development of embryos after in vitro fertilization of bovine oocytes with sperm from either yaks (Bos grunniens) or cattle (Bos taurus). Anim Reprod Sci 108:208-215
2. Zhang G, Chen W, Xue M, Wang Z, Chang H, Han X, Liao X, Wang D (2008) Analysis of genetic diversity and population structure of Chinese yak breeds (Bos grunniens) using microsatellite markers. J Genet Genomics 35:233-238
3. Sasaki M (1994) Yak: hardy multi-purpose animal of Asia highland. In Proceedings of the 1st international congress Yak, Lanzhou, China. J Gansu Agric Univ Supplement, 1-5
4. Wang M, Li P, Li J, Dai G (2008) Changes of serum macromineral concentrations relative to the body weight gain of growing yaks throughout a year-round. Livest Sci 116:203-208
5. Wiener G, Han JL, Long RJ (2003) Origins, domestication and distribution of yak, and production characteristics of yak. Pages 2, 136-137 in The Yak, 2nd edn. Regional Office for Asia and the Pacific of the Food and Agriculture Organization of the United Nations, Bangkok, Thailand
6. Wang YS, Zou SX (1995) Protein in milk. In: Biochemistry of milk. Jilin University Press, Changchun, China, pp 1-48
7. Fan BL, Li N, Hu XX, Wu CX (2000) Cloning, sequencing and polymorphism analyzing of the exon 4 of the kappa-casein gene in yak. Prog Nat Sci 10:769-773
8. Bai WL, Yin RH, Zhao SJ, Dou QL, Yang JC, Jiang WQ, Zhao ZH, Luo GB (2009) Rapid detection of bovine milk in yak milk using a polymerase chain reaction technique. J Dairy Sci 92:1354-1360
9. Bai WL, Yin RH, Zheng YC, Ma ZJ, Zhong JC, Yin RL, Dou QL, Zhang SC, Luo GB, Zhao ZH (2010) Cloning and molecular characterization of a yak a-lactalbumin cDNA from mammary tissue. Livest Sci 129:122-128
10. Milenkovic D, Martin P, Guerin G, Leroux C (2002) A specific pattern of splicing for the horse aS1-Casein mRNA and partial genomic characterization of the relevant locus. Genet Sel Evol 34:509-519
11. Velmala R, Vilkki J, Elo K, Mäki-Tanila A (1995) Casein haplotypes and their association with milk production traits in the Finnish Ayrshire cattle. Anim Genet 26:419-425
12. Mao YJ, Zhong GH, Zheng YC, Pen XW, Yang ZP, Wang Y (2004) Genetic polymorphism of milk protein and their relationships with milking traits in Chinese yak. Asian-Austral J Anim Sci 17:1479-1483
13. Mukesh M, Mishra BP, Kataria RS, Sobti RC, Ahlawat SPS (2006) Sequence analysis of UTR and coding region of kappacasein gene of Indian riverine buffalo (Bubalus bubalis). DNA Seq 17:94-98
14. Yahyaoui MH, Angiolillo A, Pilla F, Sanchez A, Folch JM (2003) Characterization and genotyping of the caprine kappa casein variants. J Dairy Sci 86:2715-2720
15. Gutiérrez-Adan A, Maga EA, Meade H, Shoemaker CF, Medrano JF, Anderson GB, Murray JD (1996) Alterations of the physical characteristics of milk from transgenic mice producing bovine jcasein. J Dairy Sci 79:791-799
16. Falaki M, Prandi A, Corradini C, Sneyers M, Gengler N, Massart S, Fazzini U, Burny A, Portetelle D, Renaville R (1997) Relationships of growth hormone gene and milk protein polymorphisms to milk production traits in Simmental cattle. J Dairy Res 64:47-56
17. Malkoski M, Dashper SG, O'Brien-Simpson NM, Talbo GH, Macris M, Cross KJ, Reynolds EC (2001) Kappacin, a novel antibacterial peptide from bovine milk. Antimicrob Agents Chem 45:2309-2315
18. Stewart AF, Willis IM, Mackinlay AG (1984) Nucleotide sequences of bovine as1-and j-casein cDNAs. Nucleic Acids Res 12:3895-3907
19. Coll A, Folch JM, Sánchez A (1993) Nucleotide sequence of the goat kappa-casein cDNA. J Anim Sci 71:2833
20. Furet JP, Mercier JC, Soulier S, Gaye P, Hue-Delahaie D, Vilotte JL (1990) Nucleotide sequence of ovine kappa-casein cDNA. Nucleic Acids Res 18:5286
21. Kappeler S, Farah Z, Puhan Z (1998) Sequence analysis of Camelus dromedarius milk caseins. J Dairy Res 65:209-222
22. Lenasi T, Rogelj I, Dovc P (2003) Characterization of equine cDNA sequences for alpha S1-, beta-and kappa-casein. J Dairy Res 70:29-36
23. Levine WB, Alexander LJ, Hoganson GE, Beattie CW (1992) Cloning and sequencing of the porcine j-casein cDNA. Anim Genet 23:361-363
24. Hall L (1990) Nucleotide sequence of guinea-pig j-casein cDNA. Nucleic Acids Res 18:6129
25. Bösze Z, Devinoy E, Puissant C, Fontaine ML, Houdebine LM (1993) Characterization of rabbit kappa-casein cDNA: control of kappa-casein gene expression in vivo and in vitro. J Mol Endocrinol 11:9-17
26. Bai WL, Yin RH, Zhao SJ, Zheng YC, Zhong JC, Zhao ZH (2008) Characterization of a j-Casein Genetic Variant in the Chinese Yak, Bos grunniens. J Dairy Sci 91:1204-1208
27. Prinzenberg E-M, Jianlin H, Erhardt G (2008) Genetic variation in the j-casein gene (CSN3) of Chinese Yak (Bos grunniens) and phylogenetic analysis of CSN3 sequences in the genus bos. J Dairy Sci 91:1198-1203
28. Tu ZC, Qiu H, Zhang YP (2002) Polymorphism in mitochondrial DNA (mtDNA) of yak (Bos grunniens). Biochem Genet 30:187-193
29. Lai SJ, Chen SY, Liu YP, Yao YG (2007) Mitochondrial DNA sequence diversity and origin of Chinese domestic yak. Anim Genet 38:77-80
30. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
31. Deléage G, Combet C, Blanchet C, Geourjon C (2001) ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities. Comput Biol Med 31:259-267
32. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA 4: molecular evolutionary genetics analysis (MEGA) software (version 4.0). Mol Biol Evol 24:1596-1599
33. Soria LA, Iglesias GM, Huguet MJ, Mirande SL (2003) A PCRRFLP test to detect allelic variants of the bovine kappa-casein gene. Anim Biotechnol 14:1-5
34. Rohallah A, Mohammadreza MA, Shahin MB (2007) Kappacasein gene study in Iranian Sistani cattle breed (Bos indicus) using PCR-RFLP. Pak J Biol Sci 10:4291-4294
35. Chen SY, Costa V, Azevedo M, Baig M, Malmakov N, Luikart G, Erhardt G, Beja-Pereira A (2008) New alleles of the bovine kappa-casein gene revealed by resequencing and haplotype inference analysis. J Dairy Sci 91:3682-3686
36. Mitra A, Schlee P, Krause I, Blusch J, Werner T, Balakrishnan CR, Pirchner F (1998) K-casein polymorphisms in Indian dairy cattle and buffalo: a new genetic variant in buffalo. Anim Biotechnol 9:81-87
37. Hayes B, Hagesaether N, Adnøy T, Pellerud G, Berg PR, Lien S (2006) Effects on production traits of haplotypes among casein genes in Norwegian goats and evidence for a site of preferential recombination. Genetics 174:455-464
38. Caroli A, Chiatti F, Chessa S, Rignanese D, Bolla P, Pagnacco G (2006) Focusing on the goat casein complex. J Dairy Sci 89:3178-3187
39. Chiatti F, Chessa S, Bolla P, Cigalino G, Caroli A, Pagnacco G (2007) Effect of kappa-casein polymorphism on milk composition in the Orobica goat. J Dairy Sci 90:1962-1966
40. Ceriotti G, Chessa S, Bolla P, Budelli E, Bianchi L, Duranti E, Caroli A (2004) Single nucleotide polymorphisms in the ovine casein genes detected by polymerase chain reaction-single strand conformation polymorphism. J Dairy Sci 87:2606-2613
41. Feligini M, Vlaco S, Curik VC, Parma P, Greppi G, Enne G (2005) A single nucleotide polymorphism in the sheep kappacasein coding region. J Dairy Res 72:317-321
42. Hobor S, Kunej T, Dovc P (2008) Polymorphisms in the kappa casein (CSN3) gene in horse and comparative analysis of its promoter and coding region. Anim Genet 39:520-530
43. Carneiro M, Ferrand N (2007) Extensive intragenic recombination and patterns of linkage disequilibrium at the CSN3 locus in European rabbit. Genet Sel Evol 39:341-452
44. Ward TJ, Honeycutt RL, Derr JN (1997) Nucleotide sequence evolution at the kappa-casein locus: evidence for positive selection within the family Bovidae. Genetics 147:1863-1872
45. Yucai Z, Guanghui Z, Yongjiang M, Xianwen P, Mingfeng J, Yong W, Sixiang Z, Jie C (2000) Milk protein genetic polymorphisms: A comparison between Maiwa yak and Jiulong yak. In: Yak Production in Central Asian Highlands. Proceedings of the 3rd international congress on Yak, Lhasa, China, pp 209-212
46. Prinzenberg E-M, Gutscher K, Chessa S, Caroli A, Erhardt G (2005) Caprine j-casein (CSN3) polymorphism: new developments in molecular knowledge. J Dairy Sci 88:1490-1498
47. Prinzenberg E-M, Krause I, Erhardt G (1999) SSCP analysis at the bovine CSN3 locus discriminates six alleles corresponding to known protein variants (A, B, C, E, F, G) and three new DNA polymorphisms (H, I, A1). Anim Biotechnol 10:49-62
48. Robitaille G, Britten M, Morisset J, Petitclerc D (2005) Polymorphism in bovine kappa-casein CSN3 gene and the 50-flanking region: sequence analysis of CSN3 A and B alleles. Anim Genet 36:184-185
49. Alexander LJ, Stewart AF, Mackinlay AG, Kapelinskaya TV, Tkach TM, Gorodetskii SI (1988) Isolation and characterization of the bovine kappa-casein gene. Eur J Biochem 178:395-401
50. Farrell HM Jr, Jimenez-Flores R, Bleck GT, Brown EM, Butler JE, Creamer LK, Hicks CL, Hollar CM, Ng-Kwai-Hang KF, Swaisgood HE (2004) Nomenclature of the proteins of cows' milk-sixth revision. J Dairy Sci 87:1641-1674
51. Holland JW, Deeth HC, Alewood PF (2005) Analysis of O-glycosylation site occupancy in bovine kappa-casein glycoforms separated by two-dimensional gel electrophoresis. Proteomics 5:990-1002
52. Qi XB, Jianlin H, Wang G, Rege JE, Hanotte O (2009) Assessment of cattle genetic introgression into domestic yak populations using mitochondrial and microsatellite DNA markers. Anim Genet doi:10.1111/j.1365-2052.2009.01989.x