Polymorphisms in the kappa casein (CSN3) gene in horse and comparative analysis of its promoter and coding region

Animal Genetics

Volumn 39, Issue 5, 2008, Pages 520-530

  Hobor, S ^a   Kunej, T ^a   Dovc, P ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

CSN3; Electrophoretic mobility shift assay; Horse; Kappa casein; Promoter; Single nucleotide polymorphism; Transcription factor; Transcription factor binding site

Indexed keywords

CASEIN;

ANIMAL; ARTICLE; CLASSIFICATION; EXON; GENETIC POLYMORPHISM; GENETICS; HORSE; HUMAN; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROMOTER REGION; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; BASE SEQUENCE; CASEINS; EQUIDAE; EXONS; HORSES; HUMANS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; PROMOTER REGIONS (GENETICS); SEQUENCE ALIGNMENT;

CAPRA HIRCUS; EQUIDAE; EQUUS ASINUS; EQUUS SUBG. HIPPOTIGRIS; MACACA; OVIS ARIES;

EID: 52449085762     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2008.01764.x     Document Type: Article

References (25)

1. Barrett J.C., Fry B., Maller J. Daly M.J. (2005) haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21, 263 5.
2. Buckland R.P. (2006) The importance and identification of regulatory polymorphisms and their mechanisms of action. Biochimica et Biophysica Acta 1762, 17 28.
3. Businco L., Giampietro P.G., Lucenti P., Lucaroni F., Pini C., Di Felice G., Iacovacci P., Curadi C. Orlandi M. (2000) Allergenicity of mare's milk in children with cow's milk allergy. Journal of Allergy and Clinical Immunology 105, 1031 4.
4. Ceriotti G., Chessa S., Bolla P., Budelli E., Bianchi L., Duranti E. Caroli A. (2004) Single nucleotide polymorphisms in the ovine casein genes detected by polymerase chain reaction-single strand conformation polymorphism. Journal of Dairy Science 87, 2606 13.
5. s1-, β-, κ-caseins, γ-casein-like and proteose peptone component 5-like peptides. Journal of Dairy Science 85, 697 706.
6. Ehret G.B., Reichenbach P., Schindler U., Horvath C.M., Fritz S., Nabholz M. Bucher P. (2001) DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. Journal of Biological Chemistry 276, 6675 88.
7. Farrell H.M., Jr., Jimenez-Flores R., Bleck G.T., Brown E.M., Butler J.E., Creamer L.K., Hicks C.L., Hollar C.M., Ng-Kwai-Hang K.F. Swaisgood H.E. (2004) Nomenclature of the proteins of cows' milk - sixth revision. Journal of Dairy Science 87, 1641 74.
8. Gerencser A., Barta E., Boa S., Kastanis P., Bosze Z. Whitelaw C.B. (2002) Comparative analysis on the structural features of the 5′ flanking region of κ-casein genes from six different species. Genetics Selection Evolution 34, 117 28.
9. Groner B. (2002) Transcription factor regulation in mammary epithelial cells. Domestic Animal Endocrinology 23, 25 32.
10. Hézard N., Cornillet P., Droullé C., Gillot L., Potron G. Nguyen P. (1997) Factor V Leiden: detection in whole blood by ASA PCR using an additional mismatch in antepenultimate position. Thrombosis Research 88, 59 66.
11. Holt C. (1992) Structure and stability of bovine casein micelles. Advances in Protein Chemistry 43, 63 151.
12. Iametti S., Tedeschi G., Oungre E. Bonomi F. (2001) Primary structure of k-casein isolated from mares' milk. Journal of Dairy Research 68, 53 61.
13. Jiang Z.H. Gibson J.P. (1999) Bi-PASA genotyping of a new polymorphism in the APOB gene shows no evidence for an association with fatness in pigs. Animal Genetics 30, 54 6.
14. Ke X., Collins A. Ye S. (2001) PIRA PCR designer for restriction analysis of single nucleotide polymorphisms. Bioinformatics 17, 838 9.
15. s1, β and κ-casein. Journal of Dairy Research 70, 29 36.
16. Lenasi T., Kokalj-Vokac N., Narat M., Baldi A. Dovc P. (2005) Functional study of the equine beta-casein and kappa-casein gene promoters. Journal of Dairy Research 72, 34 43.
17. Liu Q., Thorland E.C., Heit J.A. Sommer S.S. (1997) Overlapping PCR for bidirectional PCR amplification of specific alleles: a rapid one-tube method for simultaneously differentiating homozygotes and heterozygotes. Genome Research 7, 389 98.
18. Malewski T. (1998) Computer analysis of distribution of putative cis and trans regulatory elements in milk protein gene promoters. Biosystems 45, 29 44.
19. Mao J., Molenaar A.J., Wheeler T.T. Seyfert H.M. (2002) STAT5 binding contributes to lactational stimulation of promoter III expressing the bovine acetyl-CoA carboxylase alpha-encoding gene in the mammary gland. Journal of Molecular Endocrinology 29, 73 88.
20. Miller S.A., Dykes D.D. Polesky H.F. (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16, 1215 6.
21. Prinzenberg E.M., Gutscher K., Chessa S., Caroli A. Erhardt G. (2005) Caprine kappa-casein (CSN3) polymorphism: new developments in molecular knowledge. Journal of Dairy Science 88, 1490 8.
22. Thompson J.D., Higgins D.G. Gibson T.J. (1994) clustalw: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673 80.
23. Vanselow J., Yang W., Herrmann J., Zerbe H., Schuberth H.J., Petzl W., Tomek W. Seyfert H.M. (2006) DNA-remethylation around a STAT5-binding enhancer in the alphaS1-casein promoter is associated with abrupt shutdown of alphaS1-casein synthesis during acute mastitis. Journal of Molecular Endocrinology 37, 463 77.
24. Yahyaoui M.H., Angiolillo A., Pilla F., Sanchez A. Folch J.M. (2003) Characterization and genotyping of the caprine κ-casein variants. Journal of Dairy Science 86, 2715 20.
25. Yang J., Kennelly J.J. Baracos V.E. (2000) The activity of transcription factor Stat5 responds to prolactin, growth hormone and IGF-I in rat and bovine mammary explant culture. Journal of American Science 78, 3114 25.