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Volumn 77, Issue 1, 2011, Pages 57-68

Seasonal variations in the diversityand abundance of diazotrophic communities across soils

Author keywords

Abundance; Baseline; Diversity; NifH; Soil; Soil type

Indexed keywords

ABUNDANCE; BASELINE CONDITIONS; BODY SIZE; CLAY SOIL; GROWING SEASON; MICROBIAL COMMUNITY; NITROGEN FIXATION; PH; SEASONAL VARIATION; SOIL ECOSYSTEM; SOIL MICROORGANISM; SOIL TEXTURE; SOIL TYPE; SPECIES DIVERSITY; SPECIES RICHNESS;

EID: 79960799888     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01081.x     Document Type: Article
Times cited : (94)

References (49)
  • 1
    • 79960776767 scopus 로고
    • Nitrogen fixation and nitrogenase activity in Azotobacter chroococcum
    • Brotonegro S (1974) Nitrogen fixation and nitrogenase activity in Azotobacter chroococcum. Commum Agric Univ 10: 1-76.
    • (1974) Commum Agric Univ , vol.10 , pp. 1-76
    • Brotonegro, S.1
  • 2
    • 0034898780 scopus 로고    scopus 로고
    • The structure of microbial communities in soil and the lasting impact of cultivation
    • Buckley DH & Schmidt TM (2001) The structure of microbial communities in soil and the lasting impact of cultivation. Microbial Ecol 42: 11-21.
    • (2001) Microbial Ecol , vol.42 , pp. 11-21
    • Buckley, D.H.1    Schmidt, T.M.2
  • 3
    • 0038009298 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in soils from agro-ecosystems
    • Buckley DH & Schmidt TM (2003) Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environ Microbiol 5: 441-452.
    • (2003) Environ Microbiol , vol.5 , pp. 441-452
    • Buckley, D.H.1    Schmidt, T.M.2
  • 4
    • 33846212624 scopus 로고    scopus 로고
    • Oceanography: a marine nitrogen cycle fixation
    • Capone DG & Knapp A (2007) Oceanography: a marine nitrogen cycle fixation. Nature 445: 159-160.
    • (2007) Nature , vol.445 , pp. 159-160
    • Capone, D.G.1    Knapp, A.2
  • 5
    • 0000524452 scopus 로고
    • The mineral nutrition of wild plants
    • Chapin FS (1980) The mineral nutrition of wild plants. Annu Rev Ecol Syst 11: 233-260.
    • (1980) Annu Rev Ecol Syst , vol.11 , pp. 233-260
    • Chapin, F.S.1
  • 6
    • 0036330824 scopus 로고    scopus 로고
    • Changes in bacterial communities and Azospirillum diversity in soil fractions of a tropical soil under 3 or 19 years of natural fallow
    • Chotte J, Shwartzmann A, Bally R & Jocteur Monrozier L (2002) Changes in bacterial communities and Azospirillum diversity in soil fractions of a tropical soil under 3 or 19 years of natural fallow. Soil Biol Biochem 34: 1083-1092.
    • (2002) Soil Biol Biochem , vol.34 , pp. 1083-1092
    • Chotte, J.1    Shwartzmann, A.2    Bally, R.3    Jocteur Monrozier, L.4
  • 7
    • 0026314150 scopus 로고
    • Nitrogen fixation by Azospirillum brasiliense in soil and the rhizosphere under controlled environmental conditions
    • Christiansen-Weninger C & van Veen JA (1991) Nitrogen fixation by Azospirillum brasiliense in soil and the rhizosphere under controlled environmental conditions. Plant Breeding 12: 100-106.
    • (1991) Plant Breeding , vol.12 , pp. 100-106
    • Christiansen-Weninger, C.1    van Veen, J.A.2
  • 8
    • 0037445306 scopus 로고    scopus 로고
    • The impact of grassland management regime on the community structure of selected bacterial groups in soils
    • Clegg CD, Lovell RD & Hobbs PJ (2003) The impact of grassland management regime on the community structure of selected bacterial groups in soils. FEMS Microbiol Ecol 43: 263-270.
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 263-270
    • Clegg, C.D.1    Lovell, R.D.2    Hobbs, P.J.3
  • 9
    • 0032705769 scopus 로고    scopus 로고
    • Global patterns of terrestrial biological nitrogen (N2) fixation in natural ecosystems
    • Cleveland CC, Townsend AR & Schimel DS (1999) Global patterns of terrestrial biological nitrogen (N2) fixation in natural ecosystems. Global Biogeochem Cy 13: 623-645.
    • (1999) Global Biogeochem Cy , vol.13 , pp. 623-645
    • Cleveland, C.C.1    Townsend, A.R.2    Schimel, D.S.3
  • 10
    • 37349115287 scopus 로고    scopus 로고
    • Diversity of nifH gene pools in the rhizosphere of two cultivars of sorghum (Sorghum bicolor) treated with contrasting levels of nitrogen fertilizer
    • Coelho MRR, de Vos M, Carneiro NP, Marriel IE, Paiva E & Seldin L (2008) Diversity of nifH gene pools in the rhizosphere of two cultivars of sorghum (Sorghum bicolor) treated with contrasting levels of nitrogen fertilizer. FEMS Microbiol Lett 279: 15-22.
    • (2008) FEMS Microbiol Lett , vol.279 , pp. 15-22
    • Coelho, M.R.R.1    de Vos, M.2    Carneiro, N.P.3    Marriel, I.E.4    Paiva, E.5    Seldin, L.6
  • 11
    • 12144286064 scopus 로고    scopus 로고
    • Polymerase chain reaction denaturing gradient gel electrophoresis analysis of the N2-fixing bacterial diversity in soil under Acacia tortilis ssp. raddiana and Balanites aegyptiaca in the dryland part of Senegal
    • Diallo MD, Willems A, Vloemans N et al. (2004) Polymerase chain reaction denaturing gradient gel electrophoresis analysis of the N2-fixing bacterial diversity in soil under Acacia tortilis ssp. raddiana and Balanites aegyptiaca in the dryland part of Senegal. Environ Microbiol 6: 400-415.
    • (2004) Environ Microbiol , vol.6 , pp. 400-415
    • Diallo, M.D.1    Willems, A.2    Vloemans, N.3
  • 12
    • 0002442449 scopus 로고    scopus 로고
    • Defining and assessing soil health and sustainable productivity
    • (Pankhurst CE, Doube BM, Gupta VSR, eds). CAB International, Wallingford
    • Doran JW & Safley M (1997) Defining and assessing soil health and sustainable productivity. Biological Indicators of Soil Quality (Pankhurst CE, Doube BM & Gupta VSR, eds), pp. 1-28. CAB International, Wallingford.
    • (1997) Biological Indicators of Soil Quality , pp. 1-28
    • Doran, J.W.1    Safley, M.2
  • 13
    • 58149093894 scopus 로고    scopus 로고
    • High diversity of diazotrophs in the forefield of a receding alpine glacier
    • Duc L, Noll M & Meier BE (2009) High diversity of diazotrophs in the forefield of a receding alpine glacier. Microbiol Ecol 57: 179-190.
    • (2009) Microbiol Ecol , vol.57 , pp. 179-190
    • Duc, L.1    Noll, M.2    Meier, B.E.3
  • 14
    • 33749406386 scopus 로고    scopus 로고
    • Does disturbance and restoration of alpine grassland soils affect the genetic structure and diversity of bacterial and N2-fixing populations?
    • Gros R, Jocteur Monrozier L & Faivre P (2006) Does disturbance and restoration of alpine grassland soils affect the genetic structure and diversity of bacterial and N2-fixing populations? Environ Microbiol 8: 1889-1901
    • (2006) Environ Microbiol , vol.8 , pp. 1889-1901
    • Gros, R.1    Jocteur Monrozier, L.2    Faivre, P.3
  • 15
    • 77955057681 scopus 로고    scopus 로고
    • Protection of free-living nitrogenfixing bacteria within the soil matrix
    • Gupta V & Roper M (2010) Protection of free-living nitrogenfixing bacteria within the soil matrix. Soil Till Res 109: 50-54.
    • (2010) Soil Till Res , vol.109 , pp. 50-54
    • Gupta, V.1    Roper, M.2
  • 16
    • 33845521652 scopus 로고    scopus 로고
    • Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices
    • Hartmann M & Widmer F (2006) Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices. Appl Environ Microb 72: 7804-7812.
    • (2006) Appl Environ Microb , vol.72 , pp. 7804-7812
    • Hartmann, M.1    Widmer, F.2
  • 17
    • 0017821285 scopus 로고
    • Influence of ammonium chloride on the nitrogenase activity of nodulated pea plants (Pisum sativum)
    • Houwaard F (1978) Influence of ammonium chloride on the nitrogenase activity of nodulated pea plants (Pisum sativum). Appl Environ Microb 35: 1061-1065.
    • (1978) Appl Environ Microb , vol.35 , pp. 1061-1065
    • Houwaard, F.1
  • 19
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
    • Huber T, Faulkner G & Hugenholtz P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 20
    • 0031757669 scopus 로고    scopus 로고
    • Multiple sequence alignment with Clustal X
    • Jeanmougin F (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23: 403-405.
    • (1998) Trends Biochem Sci , vol.23 , pp. 403-405
    • Jeanmougin, F.1
  • 21
    • 4043182033 scopus 로고    scopus 로고
    • Nonparametric multiple test procedures with data-driven order of hypotheses and with weighted hypotheses
    • Kropf S (2004) Nonparametric multiple test procedures with data-driven order of hypotheses and with weighted hypotheses. J Stat Plan Infer 125: 31-47.
    • (2004) J Stat Plan Infer , vol.125 , pp. 31-47
    • Kropf, S.1
  • 22
    • 1842432415 scopus 로고    scopus 로고
    • Microbial biomass and bacterial functional diversity in forest soils: effects of organic matter removal, compaction, and vegetation control
    • Li Q, Allen H & Wollum A (2004) Microbial biomass and bacterial functional diversity in forest soils: effects of organic matter removal, compaction, and vegetation control. Soil Biol Biochem 36: 571-579.
    • (2004) Soil Biol Biochem , vol.36 , pp. 571-579
    • Li, Q.1    Allen, H.2    Wollum, A.3
  • 23
    • 84935761346 scopus 로고
    • Methods of measuring concentration of wealth
    • Lorenz MO (1905) Methods of measuring concentration of wealth. J Am Stat Assoc 9: 209-219.
    • (1905) J Am Stat Assoc , vol.9 , pp. 209-219
    • Lorenz, M.O.1
  • 24
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M & Knight R (2006) UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 14: 1-14.
    • (2006) BMC Bioinformatics , vol.14 , pp. 1-14
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 25
    • 43449125882 scopus 로고    scopus 로고
    • How to get more out of molecular fingerprints: practical tools for microbial ecology
    • Marzorati M, Wittebolle L, Boon N, Daffonchio D & Verstraete W (2008) How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ Microbiol 10: 1571-1581.
    • (2008) Environ Microbiol , vol.10 , pp. 1571-1581
    • Marzorati, M.1    Wittebolle, L.2    Boon, N.3    Daffonchio, D.4    Verstraete, W.5
  • 26
    • 0035060552 scopus 로고    scopus 로고
    • Seasonal fluctuations in the population of denitrifying and N2-fixing bacteria in an acid soil of a Norway spruce forest
    • Mergel A, Kloos K & Bothe H (2001) Seasonal fluctuations in the population of denitrifying and N2-fixing bacteria in an acid soil of a Norway spruce forest. Plant Soil 230: 145-160.
    • (2001) Plant Soil , vol.230 , pp. 145-160
    • Mergel, A.1    Kloos, K.2    Bothe, H.3
  • 27
    • 17844410383 scopus 로고    scopus 로고
    • Stereospecific effect of hexachlorocyclohexane on activity and structure of soil methanotrophic communities
    • Mertens B, Boon N & Verstraete W (2005) Stereospecific effect of hexachlorocyclohexane on activity and structure of soil methanotrophic communities. Environ Microbiol 7: 660-669.
    • (2005) Environ Microbiol , vol.7 , pp. 660-669
    • Mertens, B.1    Boon, N.2    Verstraete, W.3
  • 28
    • 77952673727 scopus 로고    scopus 로고
    • Bacterial gene abundances as indicators of greenhouse gas emission in soils
    • Morales SE, Cosart T & Holben WE (2010) Bacterial gene abundances as indicators of greenhouse gas emission in soils. ISME J 4: 799-808.
    • (2010) ISME J , vol.4 , pp. 799-808
    • Morales, S.E.1    Cosart, T.2    Holben, W.E.3
  • 29
    • 33745671276 scopus 로고    scopus 로고
    • The impact of crop residue amendments and lime on microbial community structure and nitrogen-fixing bacteria in the wheat rhizosphere
    • Nelson DR & Mele PM (2006) The impact of crop residue amendments and lime on microbial community structure and nitrogen-fixing bacteria in the wheat rhizosphere. Aust J Soil Res 44: 319-329.
    • (2006) Aust J Soil Res , vol.44 , pp. 319-329
    • Nelson, D.R.1    Mele, P.M.2
  • 30
    • 0027957393 scopus 로고
    • FASTDNAML - a tool for construction of phylogenetic trees of DNA-sequences using maximum-likehood
    • Olsen GJ, Matsuda H, Hagstrom R & Overbeek R (1994) FASTDNAML - a tool for construction of phylogenetic trees of DNA-sequences using maximum-likehood. Comput Appl Biosci 10: 41-48.
    • (1994) Comput Appl Biosci , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 31
    • 33745163551 scopus 로고    scopus 로고
    • Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils
    • Patra AK, Abbadie L, Clays-josserand A et al. (2006) Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils. Environ Microbiol 8: 1005-1016.
    • (2006) Environ Microbiol , vol.8 , pp. 1005-1016
    • Patra, A.K.1    Abbadie, L.2    Clays-josserand, A.3
  • 32
    • 0035116353 scopus 로고    scopus 로고
    • Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil
    • Poly F, Jocteur Monrozier L & Bally R (2001a) Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Res Microbiol 152: 95-103.
    • (2001) Res Microbiol , vol.152 , pp. 95-103
    • Poly, F.1    Jocteur Monrozier, L.2    Bally, R.3
  • 33
    • 0035348260 scopus 로고    scopus 로고
    • Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties
    • Poly F, Ranjard L, Goubiére SNF & Jocteur Monrozier L (2001b) Comparison of nifH gene pools in soils and soil microenvironments with contrasting properties. Appl Environ Microb 67: 2255-2262.
    • (2001) Appl Environ Microb , vol.67 , pp. 2255-2262
    • Poly, F.1    Ranjard, L.2    Goubiére, S.N.F.3    Jocteur Monrozier, L.4
  • 34
    • 0004064137 scopus 로고    scopus 로고
    • 3rd edn. Cambridge University, Cambridge, UK
    • Postgate J (1998) Nitrogen Fixation, 3rd edn. Cambridge University, Cambridge, UK.
    • (1998) Nitrogen Fixation
    • Postgate, J.1
  • 36
    • 0026301089 scopus 로고
    • 2H reduction) by free-living microorganisms from soil: effects of pH and clay content
    • 2H reduction) by free-living microorganisms from soil: effects of pH and clay content. Soil Biol Biochem 23: 275-283.
    • (1991) Soil Biol Biochem , vol.23 , pp. 275-283
    • Roper, M.1    Smith, N.2
  • 37
    • 33748700820 scopus 로고    scopus 로고
    • Effect of agricultural management regime on Burkholderia community structure in soil
    • Salles JF, van Elsas JD & van Veen JA (2006) Effect of agricultural management regime on Burkholderia community structure in soil. Microbial Ecol 52: 267-279.
    • (2006) Microbial Ecol , vol.52 , pp. 267-279
    • Salles, J.F.1    van Elsas, J.D.2    van Veen, J.A.3
  • 38
    • 39049092823 scopus 로고    scopus 로고
    • A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
    • Schloss PD & Handelsman J (2008) A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. BMC Bioinformatics 15: 1-15.
    • (2008) BMC Bioinformatics , vol.15 , pp. 1-15
    • Schloss, P.D.1    Handelsman, J.2
  • 40
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E, Leeflang P, Gommens S, van Den Broek J, van Mil S & Wernars K (2001) Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl Environ Microb 67: 2284-2291.
    • (2001) Appl Environ Microb , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommens, S.3    van Den Broek, J.4    van Mil, S.5    Wernars, K.6
  • 41
    • 69249219153 scopus 로고    scopus 로고
    • Characterization of the effect of a simulated hydrocarbon spill on diazotrophs in mangrove sediment mesocosm
    • Taketani RG, dos Santos HF, van Elsas JD & Rosado AS (2009) Characterization of the effect of a simulated hydrocarbon spill on diazotrophs in mangrove sediment mesocosm. Antonie van Leeuw 96: 343-354.
    • (2009) Antonie van Leeuw , vol.96 , pp. 343-354
    • Taketani, R.G.1    dos Santos, H.F.2    van Elsas, J.D.3    Rosado, A.S.4
  • 42
    • 34547781750 scopus 로고    scopus 로고
    • MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J & Masatoshi N (2007) MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Masatoshi, N.3
  • 43
    • 0141788244 scopus 로고    scopus 로고
    • Effect of Nfertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice
    • Tan Z, Hurek T & Reinhold-Hurek B (2003) Effect of Nfertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice. Environ Microbiol 5: 1009-1015.
    • (2003) Environ Microbiol , vol.5 , pp. 1009-1015
    • Tan, Z.1    Hurek, T.2    Reinhold-Hurek, B.3
  • 44
    • 0034672742 scopus 로고    scopus 로고
    • Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis
    • Van Elsas JD, Duarte GF, keijzer-Wolters A & Smit E (2000) Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. J Microbiol Meth 43: 133-151.
    • (2000) J Microbiol Meth , vol.43 , pp. 133-151
    • Van Elsas, J.D.1    Duarte, G.F.2    Keijzer-Wolters, A.3    Smit, E.4
  • 45
    • 42149112411 scopus 로고    scopus 로고
    • Effect of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanunm tuberosum L.)
    • Van Overbeek LS & van Elsas JD (2008) Effect of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanunm tuberosum L.). FEMS Microbiol Ecol 64: 283-296.
    • (2008) FEMS Microbiol Ecol , vol.64 , pp. 283-296
    • Van Overbeek, L.S.1    van Elsas, J.D.2
  • 46
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
    • Von Wintzingerode FV, Göbel UB & Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21: 213-229.
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-229
    • Von Wintzingerode, F.V.1    Göbel, U.B.2    Stackebrandt, E.3
  • 47
    • 33847752734 scopus 로고    scopus 로고
    • The effects of stubble retention and nitrogen application on soil microbial community structure and functional gene abundance under irrigated maize
    • Wakelin SA, Colloff MT, Harvey PR, Marschner P, Gregg AL & Rogers SL (2007) The effects of stubble retention and nitrogen application on soil microbial community structure and functional gene abundance under irrigated maize. FEMS Microbiol Ecol 59: 661-670.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 661-670
    • Wakelin, S.A.1    Colloff, M.T.2    Harvey, P.R.3    Marschner, P.4    Gregg, A.L.5    Rogers, S.L.6
  • 48
    • 61849145224 scopus 로고    scopus 로고
    • Pasture management clearly affects soil microbial community structure and N-cycling bacteria
    • Wakelin SA, Gregg AL, Simpson RJ, Li GD, Riley IT & Mckay AC (2009) Pasture management clearly affects soil microbial community structure and N-cycling bacteria. Pedobiologia 52: 237-251.
    • (2009) Pedobiologia , vol.52 , pp. 237-251
    • Wakelin, S.A.1    Gregg, A.L.2    Simpson, R.J.3    Li, G.D.4    Riley, I.T.5    Mckay, A.C.6
  • 49
    • 27444443967 scopus 로고    scopus 로고
    • Failure of the ammonia oxidation process in two pharmaceutical wastewater treatment plants is linked to shifts in the bacterial communites
    • Wittebolle L, Boon N, Vanparys B, Heylen K, de Vos P & VerstraeteW(2005) Failure of the ammonia oxidation process in two pharmaceutical wastewater treatment plants is linked to shifts in the bacterial communites. J Appl Microbial 99: 997-1006.
    • (2005) J Appl Microbial , vol.99 , pp. 997-1006
    • Wittebolle, L.1    Boon, N.2    Vanparys, B.3    Heylen, K.4    de Vos, P.5    Verstraete, W.6


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