메뉴 건너뛰기




Volumn 30, Issue 14, 2011, Pages 2843-2852

Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex

Author keywords

Chromatin structure; co activators; SAGA; transcription

Indexed keywords

HISTONE ACETYLTRANSFERASE GCN5; PEPTIDES AND PROTEINS; PROTEIN TRA1; TRANSCRIPTION FACTOR SAGA; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 79960630033     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2011.181     Document Type: Article
Times cited : (56)

References (48)
  • 1
    • 0033567954 scopus 로고    scopus 로고
    • NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p
    • DOI 10.1093/emboj/18.18.5108
    • Allard S, Utley RT, Savard J, Clarke A, Grant P, Brandl CJ, Pillus L, Workman JL, Cote J (1999) NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p. EMBO J 18: 5108-5119 (Pubitemid 29443812)
    • (1999) EMBO Journal , vol.18 , Issue.18 , pp. 5108-5119
    • Allard, S.1    Utley, R.T.2    Savard, J.3    Clarke, A.4    Grant, P.5    Brandl, C.J.6    Pillus, L.7    Workman, J.L.8    Cote, J.9
  • 2
    • 0031818471 scopus 로고    scopus 로고
    • Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe
    • DOI 10.1002/(SICI)1097-0061(199807)14:10<943::AID-YEA292>3.0.CO;2-Y
    • Bähler J, Wu JQ, Longtine MS, Shah NG, McKenzie III A, Steever AB, Wach A, Philippsen P, Pringle JR (1998) Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14: 943-951 (Pubitemid 28328000)
    • (1998) Yeast , vol.14 , Issue.10 , pp. 943-951
    • Bahler, J.1    Wu, J.-Q.2    Longtine, M.S.3    Shah, N.G.4    McKenzie III, A.5    Steever, A.B.6    Wach, A.7    Philippsen, P.8    Pringle, J.R.9
  • 3
    • 0035423749 scopus 로고    scopus 로고
    • SAGA is an essential in vivo target of the yeast acidic activator Gal4p
    • DOI 10.1101/gad.911401
    • Bhaumik SR, Green MR (2001) SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev 15: 1935-1945 (Pubitemid 32738623)
    • (2001) Genes and Development , vol.15 , Issue.15 , pp. 1935-1945
    • Bhaumik, S.R.1    Green, M.R.2
  • 4
    • 1042289670 scopus 로고    scopus 로고
    • In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer
    • DOI 10.1101/gad.1148404
    • Bhaumik SR, Raha T, Aiello DP, Green MR (2004) In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer. Genes Dev 18: 333-343 (Pubitemid 38199257)
    • (2004) Genes and Development , vol.18 , Issue.3 , pp. 333-343
    • Bhaumik, S.R.1    Raha, T.2    Aiello, D.P.3    Green, M.R.4
  • 6
    • 0035933521 scopus 로고    scopus 로고
    • Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit
    • DOI 10.1126/science.1060214
    • Brown CE, Howe L, Sousa K, Alley SC, Carrozza MJ, Tan S, Workman JL (2001) Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit. Science 292: 2333-2337 (Pubitemid 32568056)
    • (2001) Science , vol.292 , Issue.5525 , pp. 2333-2337
    • Brown, C.E.1    Howe, L.2    Sousa, K.3    Alley, S.C.4    Carrozza, M.J.5    Tan, S.6    Workman, J.L.7
  • 7
    • 77956641222 scopus 로고    scopus 로고
    • Transformation/transcription domain-associated protein (TRRAP)-mediated regulation of Wee1
    • Calonge TM, Eshaghi M, Liu J, Ronai Z, O'Connell MJ (2010) Transformation/transcription domain-associated protein (TRRAP)-mediated regulation of Wee1. Genetics 185: 81-93
    • (2010) Genetics , vol.185 , pp. 81-93
    • Calonge, T.M.1    Eshaghi, M.2    Liu, J.3    Ronai, Z.4    O'Connell, M.J.5
  • 8
    • 56849114880 scopus 로고    scopus 로고
    • Chromatin-and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
    • Cheung V, Chua G, Batada NN, Landry CR, Michnick SW, Hughes TR, Winston F (2008) Chromatin-and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol 6: e277
    • (2008) PLoS Biol , vol.6
    • Cheung, V.1    Chua, G.2    Batada, N.N.3    Landry, C.R.4    Michnick, S.W.5    Hughes, T.R.6    Winston, F.7
  • 9
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • DOI 10.1038/nmeth1019, PII NMETH1019
    • Elias JE, Gygi SP (2007) Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectro-metry. Nat Methods 4: 207-214 (Pubitemid 46358868)
    • (2007) Nature Methods , vol.4 , Issue.3 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 11
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid sequences in a protein database
    • Eng JK, McCormack AL, Yates JR (1994) An approach to correlate tandem mass-spectral data of peptides with amino-acid sequences in a protein database. J Am Soc Mass Spectrom 5: 976-989
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 12
    • 18944364218 scopus 로고    scopus 로고
    • Function of a eukaryotic transcription activator during the transcription cycle
    • DOI 10.1016/j.molcel.2005.03.029, PII S1097276505012220
    • Fishburn J, Mohibullah N, Hahn S (2005) Function of a eukaryotic transcription activator during the transcription cycle. Mol Cell 18: 369-378 (Pubitemid 41350541)
    • (2005) Molecular Cell , vol.18 , Issue.3 , pp. 369-378
    • Fishburn, J.1    Mohibullah, N.2    Hahn, S.3
  • 13
    • 33645128681 scopus 로고    scopus 로고
    • Basic methods for fission yeast
    • Forsburg SL, Rhind N (2006) Basic methods for fission yeast. Yeast 23: 173-183
    • (2006) Yeast , vol.23 , pp. 173-183
    • Forsburg, S.L.1    Rhind, N.2
  • 14
    • 49849086043 scopus 로고    scopus 로고
    • Schizosaccharomyces pombe histone acetyltransferase Mst1 (KAT5) is an essential protein required for damage response and chromosome segregation
    • Gomez EB, Nugent RL, Laria S, Forsburg SL (2008) Schizosaccharomyces pombe histone acetyltransferase Mst1 (KAT5) is an essential protein required for damage response and chromosome segregation. Genetics 179: 757-771
    • (2008) Genetics , vol.179 , pp. 757-771
    • Gomez, E.B.1    Nugent, R.L.2    Laria, S.3    Forsburg, S.L.4
  • 17
    • 34547657814 scopus 로고    scopus 로고
    • Molecular mechanisms underlying the mitosis-meiosis decision
    • DOI 10.1007/s10577-007-1151-0
    • Harigaya Y, Yamamoto M (2007) Molecular mechanisms underlying the mitosis-meiosis decision. Chromosome Res 15: 523-537 (Pubitemid 47221378)
    • (2007) Chromosome Research , vol.15 , Issue.5 , pp. 523-537
    • Harigaya, Y.1    Yamamoto, M.2
  • 18
    • 36749055217 scopus 로고    scopus 로고
    • Rapamycin sensitivity of the Schizosaccharomyces pombe tor2 mutant and organization of two highly phosphorylated TOR complexes by specific and common subunits
    • DOI 10.1111/j.1365-2443.2007.01141.x
    • Hayashi T, Hatanaka M, Nagao K, Nakaseko Y, Kanoh J, Kokubu A, Ebe M, Yanagida M (2007) Rapamycin sensitivity of the Schizosaccharomyces pombe tor2 mutant and organization of two highly phosphorylated TOR complexes by specific and common subunits. Genes Cells 12: 1357-1370 (Pubitemid 350215139)
    • (2007) Genes to Cells , vol.12 , Issue.12 , pp. 1357-1370
    • Hayashi, T.1    Hatanaka, M.2    Nagao, K.3    Nakaseko, Y.4    Kanoh, J.5    Kokubu, A.6    Ebe, M.7    Yanagida, M.8
  • 19
    • 56549083230 scopus 로고    scopus 로고
    • The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8
    • Helmlinger D, Marguerat S, Villen J, Gygi SP, Bahler J, Winston F (2008) The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8. Genes Dev 22: 3184-3195
    • (2008) Genes Dev , vol.22 , pp. 3184-3195
    • Helmlinger, D.1    Marguerat, S.2    Villen, J.3    Gygi, S.P.4    Bahler, J.5    Winston, F.6
  • 20
    • 0034790436 scopus 로고    scopus 로고
    • Disruption of Trrap causes early embryonic lethality and defects in cell cycle progression
    • DOI 10.1038/ng725
    • Herceg Z, Hulla W, Gell D, Cuenin C, Lleonart M, Jackson S, Wang ZQ (2001) Disruption of Trrap causes early embryonic lethality and defects in cell cycle progression. Nat Genet 29: 206-211 (Pubitemid 32952660)
    • (2001) Nature Genetics , vol.29 , Issue.2 , pp. 206-211
    • Herceg, Z.1    Hulla, W.2    Gell, D.3    Cuenin, C.4    Lleonart, M.5    Jackson, S.6    Wang, Z.-Q.7
  • 21
    • 35648957173 scopus 로고    scopus 로고
    • Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor
    • DOI 10.1128/MCB.00887-07
    • Hickman MJ, Winston F (2007) Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor. Mol Cell Biol 27: 7414-7424 (Pubitemid 350033649)
    • (2007) Molecular and Cellular Biology , vol.27 , Issue.21 , pp. 7414-7424
    • Hickman, M.J.1    Winston, F.2
  • 23
    • 52049091512 scopus 로고    scopus 로고
    • What controls TOR?
    • Jacinto E (2008) What controls TOR? IUBMB Life 60: 483-496
    • (2008) IUBMB Life , vol.60 , pp. 483-496
    • Jacinto, E.1
  • 24
    • 33747361359 scopus 로고    scopus 로고
    • Stress-specific role of fission yeast Gcn5 histone acetyltransferase in programming a subset of stress response genes
    • Johnsson A, Xue-Franzen Y, Lundin M, Wright AP (2006) Stress-specific role of fission yeast Gcn5 histone acetyltransferase in programming a subset of stress response genes. Eukaryot Cell 5: 1337-1346
    • (2006) Eukaryot Cell , vol.5 , pp. 1337-1346
    • Johnsson, A.1    Xue-Franzen, Y.2    Lundin, M.3    Wright, A.P.4
  • 25
    • 0037470228 scopus 로고    scopus 로고
    • Use of a genetically introduced cross-linker to identify interaction sites of acidic activators within native transcription factor IID and SAGA
    • DOI 10.1074/jbc.M212514200
    • Klein J, Nolden M, Sanders SL, Kirchner J, Weil PA, Melcher K (2003) Use of a genetically introduced cross-linker to identify interaction sites of acidic activators within native transcription factor IID and SAGA. J Biol Chem 278: 6779-6786 (Pubitemid 36800666)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.9 , pp. 6779-6786
    • Klein, J.1    Nolden, M.2    Sanders, S.L.3    Kirchner, J.4    Weil, P.A.5    Melcher, K.6
  • 26
    • 79251584630 scopus 로고    scopus 로고
    • Domains of Tra1 important for activator recruitment and transcription coactivator functions of SAGA and NuA4 complexes
    • Knutson BA, Hahn S (2011) Domains of Tra1 important for activator recruitment and transcription coactivator functions of SAGA and NuA4 complexes. Mol Cell Biol 31 : 818-831
    • (2011) Mol Cell Biol , vol.31 , pp. 818-831
    • Knutson, B.A.1    Hahn, S.2
  • 28
    • 34547907882 scopus 로고    scopus 로고
    • Deregulated expression of a novel component of TFTC/STAGA histone acetyltransferase complexes, rat SGF29, in hepatocellular carcinoma: Possible implication for the oncogenic potential of c-Myc
    • DOI 10.1038/sj.onc.1210349, PII 1210349
    • Kurabe N, Katagiri K, Komiya Y, Ito R, Sugiyama A, Kawasaki Y, Tashiro F (2007) Deregulated expression of a novel component of TFTC/STAGA histone acetyltransferase complexes, rat SGF29, in hepatocellular carcinoma: possible implication for the oncogenic potential of c-Myc. Oncogene 26: 5626-5634 (Pubitemid 47267841)
    • (2007) Oncogene , vol.26 , Issue.38 , pp. 5626-5634
    • Kurabe, N.1    Katagiri, K.2    Komiya, Y.3    Ito, R.4    Sugiyama, A.5    Kawasaki, Y.6    Tashiro, F.7
  • 30
    • 0032493894 scopus 로고    scopus 로고
    • The novel ATM-related protein TRRAP is an essential cofactor for the c- Myc and E2F oncoproteins
    • DOI 10.1016/S0092-8674(00)81479-8
    • McMahon SB, Van Buskirk HA, Dugan KA, Copeland TD, Cole MD (1998) The novel ATM-related protein TRRAP is an essential cofactor for the c-Myc and E2F oncoproteins. Cell 94: 363-374 (Pubitemid 28376080)
    • (1998) Cell , vol.94 , Issue.3 , pp. 363-374
    • McMahon, S.B.1    Van Buskirk, H.A.2    Dugan, K.A.3    Copeland, T.D.4    Cole, M.D.5
  • 31
    • 0037314175 scopus 로고    scopus 로고
    • Sequential recruitment of HAT and SWI/SNF components to condensed chromatin by VP16
    • DOI 10.1016/S0960-9822(03)00048-4, PII S0960982203000484
    • Memedula S, Belmont AS (2003) Sequential recruitment of HATand SWI/SNF components to condensed chromatin by VP16. Curr Biol 13: 241-246 (Pubitemid 36178303)
    • (2003) Current Biology , vol.13 , Issue.3 , pp. 241-246
    • Memedula, S.1    Belmont, A.S.2
  • 32
    • 0036566794 scopus 로고    scopus 로고
    • Identification of histone H4-like TAF in Schizosaccharomyces pombe as a protein that interacts with WD repeat-containing TAF
    • Mitsuzawa H, Ishihama A (2002) Identification of histone H4-like TAF in Schizosaccharomyces pombe as a protein that interacts with WD repeat-containing TAF. Nucleic Acids Res 30: 1952-1958 (Pubitemid 34537590)
    • (2002) Nucleic Acids Research , vol.30 , Issue.9 , pp. 1952-1958
    • Mitsuzawa, H.1    Ishihama, A.2
  • 33
    • 34547902154 scopus 로고    scopus 로고
    • Orchestration of chromatin-based processes: Mind the TRRAP
    • DOI 10.1038/sj.onc.1210605, PII 1210605
    • Murr R, Vaissiere T, Sawan C, Shukla V, Herceg Z (2007) Orchestration of chromatin-based processes: mind the TRRAP. Oncogene 26: 5358-5372 (Pubitemid 47260461)
    • (2007) Oncogene , vol.26 , Issue.37 , pp. 5358-5372
    • Murr, R.1    Vaissiere, T.2    Sawan, C.3    Shukla, V.4    Herceg, Z.5
  • 35
    • 0034912714 scopus 로고    scopus 로고
    • Transcriptional coactivator complexes
    • DOI 10.1146/annurev.biochem.70.1.475
    • Naar AM, Lemon BD, Tjian R (2001) Transcriptional coactivator complexes. Annu Rev Biochem 70: 475-501 (Pubitemid 32662218)
    • (2001) Annual Review of Biochemistry , vol.70 , pp. 475-501
    • Naar, A.M.1    Lemon, B.D.2    Tjian, R.3
  • 36
    • 14844362869 scopus 로고    scopus 로고
    • RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast
    • DOI 10.1128/MCB.25.6.2331-2346.2005
    • Petrie VJ, Wuitschick JD, Givens CD, Kosinski AM, Partridge JF (2005) RNA interference (RNAi)-dependent and RNAi-indepen-dent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast. Mol Cell Biol 25: 2331-2346 (Pubitemid 40354629)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.6 , pp. 2331-2346
    • Petrie, V.J.1    Wuitschick, J.D.2    Givens, C.D.3    Kosinski, A.M.4    Partridge, J.F.5
  • 38
    • 26444507919 scopus 로고    scopus 로고
    • Targets of the Gal4 transcription activator in functional transcription complexes
    • DOI 10.1128/MCB.25.20.9092-9102.2005
    • Reeves WM, Hahn S (2005) Targets of the Gal4 transcription activator in functional transcription complexes. Mol Cell Biol 25: 9092-9102 (Pubitemid 41429097)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.20 , pp. 9092-9102
    • Reeves, W.M.1    Hahn, S.2
  • 39
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • DOI 10.1038/13732
    • Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030-1032 (Pubitemid 29474865)
    • (1999) Nature Biotechnology , vol.17 , Issue.10 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Seraphin, B.6
  • 40
    • 68249129270 scopus 로고    scopus 로고
    • Insights into SAGA function during gene expression
    • Rodriguez-Navarro S (2009) Insights into SAGA function during gene expression. EMBO Rep 10: 843-850
    • (2009) EMBO Rep , vol.10 , pp. 843-850
    • Rodriguez-Navarro, S.1
  • 45
    • 0021749263 scopus 로고
    • The SPT3 gene is required for normal transcription of Ty elements in S. cerevisiae
    • Winston F, Durbin KJ, Fink GR (1984) The SPT3 gene is required for normal transcription of Ty elements in S. cerevisiae. Cell 39: 675-682 (Pubitemid 15198605)
    • (1984) Cell , vol.39 , Issue.2-3 , pp. 675-682
    • Winston, F.1    Durbin, K.J.2    Fink, G.R.3
  • 47
    • 0036311179 scopus 로고    scopus 로고
    • Analysis of Spt7 function in the Saccharomyces cerevisiae SAGA coactivator complex
    • DOI 10.1128/MCB.22.15.5367-5379.2002
    • Wu PY, Winston F (2002) Analysis of Spt7 function in the Saccharomyces cerevisiae SAGA coactivator complex. Mol Cell Biol 22: 5367-5379 (Pubitemid 34755749)
    • (2002) Molecular and Cellular Biology , vol.22 , Issue.15 , pp. 5367-5379
    • Wu, P.-Y.J.1    Winston, F.2
  • 48
    • 0031110336 scopus 로고    scopus 로고
    • Molecular genetic elucidation of the tripartite structure of the Schizosaccharomyces pombe 72 kDa TFIID subunit which contains a WD40 structural motif
    • Yamamoto T, Poon D, Weil PA, Horikoshi M (1997) Molecular genetic elucidation of the tripartite structure of the Schizosaccharomyces pombe 72kDa TFIID subunit which contains a WD40 structural motif. Genes Cells 2: 245-254 (Pubitemid 127688576)
    • (1997) Genes to Cells , vol.2 , Issue.4 , pp. 245-254
    • Yamamoto, T.1    Poon, D.2    Weil, P.A.3    Horikoshi, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.