Novel approach to controlled protein crystallization through ligandation of yttrium cations

Journal of Applied Crystallography

Volumn 44, Issue 4, 2011, Pages 755-762

  Zhang, Fajun ^a   Zocher, Georg ^a   Sauter, Andrea ^a   Stehle, Thilo ^a,b   Schreiber, Frank ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

ligandation; Protein crystallization; yttrium

Indexed keywords

ACIDIC PROTEINS; ANOMALOUS DISPERSION; ASPARTATES; CRYSTAL STRUCTURE DETERMINATION; HIGH QUALITY CRYSTALS; INTEGRAL PART; LACTOGLOBULIN; LIGANDATION; MULTIVALENT IONS; PHASE PROBLEM; PHASE-TRANSITION BOUNDARY; POTENTIAL APPLICATIONS; PROTEIN CRYSTALLIZATION; SALT CONCENTRATION; SIDE-CHAINS; SPACE GROUPS; SPECIFIC BINDING; STRUCTURE ANALYSIS; YTTRIUM ION;

CRYSTAL GROWTH; CRYSTAL LATTICES; CRYSTALLIZATION; IONS; MOLECULES; PHASE DIAGRAMS; PROTEINS; YTTRIUM;

YTTRIUM ALLOYS;

BOVINAE;

EID: 79960620987     PISSN: 00218898     EISSN: 16005767     Source Type: Journal    
DOI: 10.1107/S0021889811017997     Document Type: Article

References (57)

1. Adams, P. D., Gopal, K., Grosse-Kunstleve, R. W., Hung, L.-W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Pai, R. K., Read, R. J., Romo, T. D., Sacchettini, J. C., Sauter, N. K., Storoni, L. C. & Terwilliger, T. C. (2004). J. Synchrotron Rad. 11, 53-55.
2. Anderson, V. J. & Lekkerkerker, H. N. (2002). Nature (London), 416, 811-815.
3. Asherie, N., Lomakin, A. & Benedek, G. B. (1996). Phys. Rev. Lett. 77, 4832-4835.
4. Bonneté, F., Finet, S. & Tardieu, A. (1999). J. Cryst. Growth, 196, 403-414.
5. Bouyain, S., Longo, P. A., Li, S., Ferguson, K. M. & Leahy, D. J. (2005). Proc. Natl Acad. Sci. USA, 102, 15024-15029.
6. Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M. & Paciorek, W. (2003). Acta Cryst. D59, 2023-2030.
7. Brownlow, S., Morais Cabral, J. H., Cooper, R., Flower, D. R., Yewdall, S. J., Polikarpov, I., North, A. C. & Sawyer, L. (1997). Structure, 5, 481-495.
8. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
9. Curtis, R. A., Blanch, H. W. & Prausnitz, J. M. (2001). J. Phys. Chem. B, 105, 2445-2452.
10. Durbin, S. D. & Feher, G. (1996). Annu. Rev. Phys. Chem. 47, 171-204.
11. Elofsson, U. M., Paulsson, M. A. & Arnebrant, T. (1997). Langmuir, 13, 1695-1700.
12. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
13. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
14. Fenn, T. D., Ringe, D. & Petsko, G. A. (2003). J. Appl. Cryst. 36, 944-947.
15. Galkin, O. & Vekilov, P. G. (2000a). J. Am. Chem. Soc. 122, 156-163.
16. Galkin, O. & Vekilov, P. G. (2000b). Proc. Natl Acad. Sci. USA, 97, 6277-6281.
17. George, A. & Wilson, W. W. (1994). Acta Cryst. D50, 361-365.
18. Grosberg, A. Y., Nguyen, T. T. & Shklovskii, B. I. (2002). Rev. Mod. Phys. 74, 329-345.
19. Gunton, J. D., Shiryayev, A. & Pagan, D. L. (2007). Protein Condensation-Kinetic Pathways to Crystallization and Disease. New York: Cambridge University Press.
20. Guo, F., Esser, L., Singh, S. K., Maurizi, M. R. & Xia, D. (2002). J. Biol. Chem. 277, 46753-46762.
21. Hagen, M. H. J. & Frenkel, D. (1994). J. Chem. Phys. 101, 4093-4097.
22. Holm, L. & Sander, C. (1993). J. Mol. Biol. 233, 123-138.
23. Ianeselli, L., Zhang, F., Skoda, M. W., Jacobs, R. M., Martin, R. A., Callow, S., Prévost, S. & Schreiber, F. (2010). J. Phys. Chem. B, 114, 3776-3783.
24. Kabsch, W. (1993). J. Appl. Cryst. 26, 795-800.
25. Koide, S. (2009). Curr. Opin. Struct. Biol. 19, 449-457.
26. Krissinel, E. & Henrick, K. (2007). J. Mol. Biol. 372, 774-797.
27. Langer, G., Cohen, S. X., Lamzin, V. S. & Perrakis, A. (2008). Nat. Protoc. 3, 1171-1179.
28. Lomakin, A., Asherie, N. & Benedek, G. B. (2003). Proc. Natl Acad. Sci. USA, 100, 10254-10257.
29. Lovell, S. C., Davis, I. W., Arendall, W. B. III, de Bakker, P. I., Word, J. M., Prisant, M. G., Richardson, J. S. & Richardson, D. C. (2003). Proteins, 50, 437-450.
30. Lutsko, J. F. & Nicolis, G. (2006). Phys. Rev. Lett. 96, 046102.
31. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
32. Muschol, M. & Rosenberger, F. (1995). J. Chem. Phys. 103, 10424-10432.
33. Muschol, M. & Rosenberger, F. (1997). J. Chem. Phys. 107, 1953-1962.
34. Nicolis, G. & Nicolis, C. (2003). Physica A, 323, 139-154.
35. Petsev, D. N. & Vekilov, P. G. (2000). Phys. Rev. Lett. 84, 1339-1342.
36. Piazza, R. (2004). Curr. Opin. Colloid Interf. Sci. 8, 515-522.
37. Piazza, R., Iacopini, S. & Galliano, M. (2002). Europhys. Lett. 59, 149-154.
38. Qin, B. Y., Bewley, M. C., Creamer, L. K., Baker, H. M., Baker, E. N. & Jameson, G. B. (1998). Biochemistry, 37, 14014-14023.
39. Rosenbaum, D. F. & Zukoski, C. F. (1996). J. Cryst. Growth, 169, 752-758.
40. Sakurai, K., Oobatake, M. & Goto, Y. (2001). Protein Sci. 10, 2325-2335.
41. Sawyer, L., Kontopidis, G. & Wu, S. Y. (1999). Int. J. Food Sci. Technol. 34, 409-418.
42. Selmer, M., Wilting, R., Holmlund, D. & Su, X.-D. (2002). Acta Cryst. D58, 1871-1873.
43. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
44. Shukla, A., Mylonas, E., Di Cola, E., Finet, S., Timmins, P., Narayanan, T. & Svergun, D. I. (2008). Proc. Natl Acad. Sci. USA, 105, 5075-5080.
45. Sober, H. A. (1970). Handbook of Biochemistry: Selected Data for Molecular Biology. Cleveland: The Chemical Rubber Co.
46. Stradner, A., Sedgwick, H., Cardinaux, F., Poon, W. C., Egelhaaf, S. U. & Schurtenberger, P. (2004). Nature (London), 432, 492-495.
47. Talanquer, V. & Oxtoby, D. W. (1998). J. Chem. Phys. 109, 223-227.
48. Tardieu, A., Le Verge, A., Malfois, M., Bonneté, F., Finet, S., Riès-Kautt, M. & Belloni, L. (1999). J. Cryst. Growth, 196, 193-203.
49. Townend, R., Weinberger, L. & Timasheff, S. N. (1960). J. Am. Chem. Soc. 82, 3175-3179.
50. Townend, R., Winterbottom, R. J. & Timasheff, S. N. (1960). J. Am. Chem. Soc. 82, 3161-3168.
51. Vekilov, P. G. (2004). Cryst. Growth Des. 4, 671-685.
52. Velev, O. D., Kaler, E. W. & Lenhoff, A. M. (1998). Biophys. J. 75, 2682-2697.
53. Wolde, P. R. ten & Frenkel, D. (1997). Science, 277, 1975-1978.
54. Xu, H. E., Lambert, M. H., Montana, V. G., Plunket, K. D., Moore, L. B., Collins, J. L., Oplinger, J. A., Kliewer, S. A., Gampe, R. T., McKee, D. D., Moore, J. T. & Willson, T. M. (2001). Proc. Natl Acad. Sci. USA, 98, 13919-13924.
55. Zhang, F., Skoda, M. W., Jacobs, R. M., Martin, R. A., Martin, C. M. & Schreiber, F. (2007). J. Phys. Chem. B, 111, 251-259.
56. Zhang, F., Skoda, M. W., Jacobs, R. M., Zorn, S., Martin, R. A., Martin, C. M., Clark, G. F., Weggler, S., Hildebrandt, A., Kohlbacher, O. & Schreiber, F. (2008). Phys. Rev. Lett. 101, 148101.
57. Zhang, F., Weggler, S., Ziller, M., Ianeselli, L., Heck, B. S., Hildebrandt, A., Kohlbacher, O., Skoda, M. W. A., Jacobs, R. M. J. & Schreiber, F. (2010). Proteins Struct. Funct. Bioinformatics, 78, 3450-3457.