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Volumn 92, Issue 8, 2011, Pages 1888-1898

Rediscovery and genomic characterization of bovine astroviruses

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASTROVIRUS; BOVINE ASTROVIRUS; CONTROLLED STUDY; FECES ANALYSIS; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC DISTANCE; GENETIC RECOMBINATION; GENOTYPE; HONG KONG; MIXED INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; VIRUS DETECTION; VIRUS GENOME; VIRUS STRAIN;

EID: 79960350217     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.030817-0     Document Type: Article
Times cited : (70)

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