Astrovirus ribosomal frameshifting in an infection-transfection transient expression system

Journal of Virology

Volumn 70, Issue 5, 1996, Pages 2869-2875

  Lewis, Terry L ^a,b   Matsui, Suzanne M ^a,b,c  

^a Program in Cancer Biology   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c VA PALO ALTO HEALTH CARE SYSTEM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; ASTROVIRUS; EXPRESSION VECTOR; FRAMESHIFT MUTATION; GENE INSERTION; GENETIC TRANSFECTION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; ROTAVIRUS; VIRUS MUTATION; VIRUS TRANSCRIPTION;

EID: 0029878110     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.5.2869-2875.1996     Document Type: Article

References (41)

1. Bredenbeek, P. J., C. J. Pachuk, A. F. H. Noten, J. Charite, W. Luytjes, S. R. Weiss, and W. J. M. Spaan. 1990 The primary structure and expression of the second open reading frame of the polymerase gene of the coronavirus MHV-A59: a highly conserved polymerase is expressed by an efficient ribosomal frameshifting mechanism. Nucleic Acids Res. 18:1325-1832.
2. Brierley, I. 1995 Ribosomal frameshifting on viral RNAs. J. Gen Virol. 76:1885-1892.
3. Brierley, I., M. E. G. Boursnell, M. M. Binns, B. Bilimoria, V. C. Blok, T. D. K. Brown, and S. C. Inglis. 1987. An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV. EMBO J. 6:3779-3785.
4. Brierley, I., P. Digard, and S. C. Inglis. 1989. Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement tor an RNA pseudoknot. Cell 57:537-547.
5. Brierley, I., N. J. Rolley, A. J. Jenner, and S. C. Inglis. 1991. Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal. J Mol. Biol. 220:889-902.
6. Cassan, M., N. Delaunay, C. Vaquero, and J.-P. Rousset. 1994. Translational frameshifting at the gag-pol junction of human immunodeficiency virus type 1 is not increased in infected T-lymphoid cells. J. Virol. 68:1501-1508.
7. Cox, G. J., S. M. Matsui, R. S. Lo, M. Hinds, R. A. Bowden, R. C. Hackman, W. G. Meyer, M. Mori, P. I. Tarr, L. S. Oshiro, J. E. Ludert, J. D. Meyers, and G. B. McDonald, 1994. Etiology and outcome of diarrhea after marrow transplantation: a prospective study Gastroenterology 107:1398-1407
8. Cruz, J. R., A. V. Bartlett, J. E. Herrmann, P. Cáceres, N. R. Blacklow, and F. Cano. 1992 Astrovirus-associated diarrhea among Guatemalan ambulatory rural children. J. Clin Microbiol 30:1140-1144.
9. Elroy-Stein, O., T. R. Fuerst, and B. Moss. 1989. Cap-independent translation of mRNA conferred by encephalomyocarditis virus 5′ sequence improves the performance of the vaccinia virus/bacteriophage T7 hybrid expression system. Proc. Natl. Acad. Sci. USA 86:6126-6130.
10. Falk, H., N. Mador, R. Udi, A. Panet, and A. Honigman. 1993. Two cis-acting signals control ribosomal frameshift between human T-cell leukemia virus type II gag and pro genes. J. Virol. 67:6273-6277.
11. Fuerst, T. R., E. G. Niles, F. W. Studier, and B. Moss. 1986. Eukaryotic transient-expression system based on recombinant vaccinia virus that synthesizes bacteriophage T7 RNA polymerase. Proc. Natl. Acad. Sci USA 83:8122-8126
12. Grakoui, A., C. Wychowski, C. Lin, S. M. Feinstone, and C. M. Rice. 1993 Expression and identification of hepatitis C virus polyprotein cleavage products. J. Virol. 67:1385-1395.
13. Grohmann, G. S., R. I. Glass, H. G. Pereira, S. S. Monroe, A. W. Hightower. R. Weber, and R. T. Bryan. 1993 Enteric viruses and diarrhea in HIV-infected patients. N. Engl J Med. 329:14-20.
14. Herrmann, J. E., D. N. Taylor, P. Echeverria, and N. R. Blacklow. 1991. Astroviruses as a cause of gastroenteritis in children. N. Engl J. Med 324:1757-1760.
15. Jacks, T. 1990. Translational suppression in gene expression in retroviruses and retrotransposons. Curr Top. Microbiol. Immunol. 157:93-124.
16. Jacks, T., H. D. Madhani, F. R. Masiarz, and H. E. Varmus. 1988. Signals for ribosomal frameshifting in the Rous sarcoma virus. Cell 55:447-458.
17. Jacks, T., M. D. Power, F. R. Masiarz, P. A. Luciw, P. J. Barr, and H. E. Varmus. 1988 Characterization of ribosomal frameshifting in HIV-1 gag-pol expression. Nature (London) 331:280-283.
18. Jacks, T., and H. E. Varmns. 1985. Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting. Science 230:1237-1242.
19. Jiang, B., S. S. Monroe, E. V. Koonin, S. E. Stine, and R. I. Glass. 1993. RNA sequence of astrovirus: distinctive genomic organization and a putative retrovirus-like ribosomal frameshifting signal that directs the viral replicase synthesis. Proc. Natl Acad. Sci. USA USA 90:10539-10543.
20. Kozak, M. 1987. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15:8125-8148.
21. Kurtz, J. B., and T. W. Lee. 1987 Astroviruses: human and animal. Ciba Found. Symp. 128:92-107.
22. Lewis, T. L., H. B. Greenberg, J. E. Herrmann, L. S. Smith, and S. M. Matsui. 1994. Analysis of astrovirus serotype 1 RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein. J Virol. 68:77-83.
23. Lewis, T. L., and S. M. Matsui. 1995 An astrovirus frameshift signal induces ribosomal frameshifting in vitro. Arch. Virol. 140:1127-1135
24. Mackow, E. R., M. Y. Yamanaka, M. N. Dang, and H. B. Greenberg. 1990. DNA amplification-restricted transcription-translation: rapid analysis of rhesus rotavirus neutralization sites. Proc. Natl. Acad Sci. USA 87:518-522.
25. Madeley, C. R., and B. P. Cosgrove. 1975. Viruses in infantile gastroenteritis. Lancet ii:124.
26. Marczinke, B., A. J. Bloys, T. D. K. Brown, M. M. Willcocks, M. J. Carter, and I. Brieriey. 1994. The human astrovirus RNA-dependent RNA polymerase coding region is expressed by ribosomal frameshifting. J. Virol. 68:5588-5595.
27. Matsui, S. M., J. P. Kim, H. B. Greenberg, L. M. Young, L. S. Smith, T. L. Lewis, J. E. Herrmann, N. R. Blacklow, K. Dupuis, and G. R. Reyes. 1993. Cloning and characterization of human astrovirus immunoreactive epitopes. J Virol. 67:1712-1715
28. Monroe, S. S., M. J. Carter, J. E. Herrmann, J. B. Kurtz, and S. M. Matsui. 1995. Family Astroviridae, p. 354-367. In F A. Murphy, C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo, and M. D. Summers (ed.), Classification and nomenclature of viruses. Sixth Report of the International Committee on Taxonomy of Viruses. Springer-Verlag, Berlin.
29. Monroe, S. S., B. Jiang, S. E. Stine, M. Koopmans, and R. I. Glass. 1993. Subgenomic RNA sequence of human astrovirus supports classification of Astroviridae as a new family of RNA viruses. J. Virol. 67:3611-3614.
30. Monroe, S. S., S. E. Stine, L. Gorelkin, J. E. Herrmann, N. R. Blacklow, and R. I. Glass. 1991. Temporal synthesis of proteins and RNAs during human astrovirus infection of cultured cells. J. Virol. 65:641-648.
31. Moosmayer, D., H. Reil, M. Ausmeir, J.-G. Scharf, H. Hauser, K. D. Jentsch, and G. Hunsmann. 1991. Expression and frameshifting but extremely inefficient proteolytic processing of the gag and pol gene products in stably transfected rodent cell lines. Virology 183:215-224.
32. Moss, B., O. Elroy-Stein, T. Mizukami, W. A. Alexander, and T. R. Fuerst. 1990. New mammalian expression vectors. Nature (London) 348:91-92.
33. Oshiro, L. S., C. E. Haley, R. R. Roberto, J. L. Riggs, M. Croughan, H. Greenberg, and A. Kapikian. 1981. A 27-nm virus isolated during an outbreak of acute infectious nonbacterial gastroenteritis in a convalescent hospital: a possible new serotype. J Infect. Dis. 143:791-795.
34. Parkin, N. T., M. Chamorro, and H. E. Varmus. 1992. Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: demonstration by expression in vivo. J. Virol. 66:5147-5151.
35. Reil, H., and H. Hauser. 1990. Test system for determination of HIV-1 frameshifting efficiency in animal cells. Biochim. Biophys. Acta 1050:288-292.
36. Reil, H., H. Kollmus, C. H. Weidle, and H. Hauser. 1993 A heptanucleotide sequence mediates ribosomal frameshifting in mammalian cells. J. Virol. 67:5579-5584.
37. Shaw, R. D., P. T. Vo, P. A. Offit, B. S. Coulson, and H. B. Greenberg. 1986. Antigenic mapping of the surface proteins of rhesus rotavirus. Virology 155:434-451.
38. Snijder, E. J., J. A. den Boon, P. J. Bredenbeek, M. C. Horzinek, R. Rijnbrand, and W. J. M. Spaan. 1990 The carboxyl-terminal part of the putative Berne virus polymerase is expressed by ribosomal frameshifting and contains sequence motifs which indicate that toro- and coronaviruses are evolutionarily related. Nucleic Acids Res. 18:4535-4542.
39. Willcocks, M. M., T. D. K. Brown, C. R. Madeley, and M. J. Carter. 1994 The complete sequence of a human astrovirus. J. Gen. Virol. 75:1785-1788.
40. Willcocks, M. M., and M. J. Carter. 1993. Identification and sequence determination of the human capsid protein gene of human astrovirus serotype 1. FEMS Microbiol. Lett. 114:1-8.
41. Wilson, W., M. Braddock, S. E. Adams, P. D. Rathjen, S. M. Kingsman, and A. J. Kingsman. 1988. HIV expression strategies: ribosomal frameshifting is directed by a short sequence in both mammalian and yeast systems Cell 55:1159-1169.