Complete sequence of a duck astrovirus associated with fatal hepatitis in ducklings

Journal of General Virology

Volumn 90, Issue 5, 2009, Pages 1104-1108

  Fu, Yu ^a   Pan, Meng ^a   Wang, Xiaoyan ^a   Xu, Yongliang ^a   Xie, Xiaoyu ^a   Knowles, Nick J ^b   Yang, Hanchun ^a   Zhang, Dabing ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASTROVIRUS; CHINA; DUCK ASTROVIRUS; DUCKLING; GENE SEQUENCE; HEPATITIS; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; SEROTYPE; VIRUS ASSEMBLY; VIRUS GENOME; VIRUS TRANSCRIPTION; VIRUS TRANSMISSION; AMINO ACID SEQUENCE; ANIMAL; ANIMAL DISEASE; ANIMAL HEPATITIS; BIRD DISEASE; CHEMISTRY; CLASSIFICATION; DUCK; GENETICS; MOLECULAR GENETICS; MORTALITY; SEQUENCE ALIGNMENT; VIROLOGY; VIRUS INFECTION;

ANAS; ASTROVIRIDAE; TURKEY ASTROVIRUS 2;

VIRUS DNA;

AMINO ACID SEQUENCE; ANIMALS; ASTROVIRIDAE INFECTIONS; AVASTROVIRUS; BASE SEQUENCE; DNA, VIRAL; DUCKS; HEPATITIS, VIRAL, ANIMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; POULTRY DISEASES; SEQUENCE ALIGNMENT;

EID: 67449107782     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.008599-0     Document Type: Article

References (38)

1. Asplin, F. D. (1965). Duck hepatitis. Vaccination against two serological types. Vet Rec 77, 1529-1530.
2. Chu, D. K. W., Poon, L. L. M., Guan, Y. & Peiris, J. S. M. (2008). Novel astroviruses in insectivorous bats. J Virol 82, 9107-9114.
3. Ding, C. & Zhang, D. (2007). Molecular analysis of duck hepatitis virus 1. Virology 361, 9-17.
4. Finkbeiner, S. R., Kirkwood, C. D. & Wang, D. (2008). Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea. Virol J 5, 117.
5. Fu, Y., Pan, M., Wang, X., Xu, Y., Yang, H. & Zhang, D. (2008). Molecular detection and typing of duck hepatitis A virus directly from clinical specimens. Vet Microbiol 131, 247-257.
6. Gough, R. E., Collins, M. S., Borland, E. D. & Keymer, I. F. (1984). Astrovirus-like particles associated with hepatitis in ducklings. Vet Rec 114, 279.
7. Gough, R. E., Borland, E. D., Keymer, I. F. & Stuart, J. C. (1985). An outbreak of duck hepatitis type II in commercial ducks. Avian Pathol 14, 227-236.
8. Haider, S. A. & Calnek, B. W. (1979). In vitro isolation, propagation and characterisation of duck hepatitis virus type III. Avian Dis 23, 715-729.
9. Imada, T., Yamaguchi, S., Mase, M., Tsukamoto, K., Kubo, M. & Morooka, A. (2000). Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA. J Virol 74, 8487-8493.
10. Jiang, B., Monroe, S. S., Koonin, E. V., Stine, S. E. & Glass, R. I. (1993). RNA sequence of astrovirus: Distinctive genomic organization and a putative retrovirus-like ribosomal frameshifting signal that directs the viral replicase synthesis. Proc Natl Acad Sci U S A 90 10539-10543.
11. Jonassen, C. M., Jonassen, T. Ø. & Grinde, B. (1998). A common RNA motif in the 3′ end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. J Gen Virol 79, 715-718.
12. Jonassen, C. M., Jonassen, T. Ø., Saif, Y. M., Snodgrass, D. R., Ushijima, H., Shimizu, M. & Grinde, B. (2001). Comparison of capsid sequences from human and animal astroviruses. J Gen Virol 82, 1061-1067.
13. Jonassen, C. M., Jonassen, T. Ø., Sveen, T. M. & Grinde, B. (2003). Complete genomic sequences of astroviruses from sheep and turkey: Comparison with related viruses. Virus Res 91, 195-201.
14. Kim, M. C., Kwon, Y. K., Joh, S. J., Lindberg, A. M., Kwon, J. H., Kim, J. H. & Kim, S. J. (2006). Molecular analysis of duck hepatitis virus type 1 reveals a novel lineage close to the genus Parechovirus in the family Picornaviridae. J Gen Virol 87, 3307-3316.
15. Kim, M. C., Kwon, Y. K., Joh, S. J., Kim, S. J., Tolf, C., Kim, J. H., Sung, H. W., Lindberg, A. M. & Kwon, J. H. (2007). Recent Korean isolates of duck hepatitis virus revealed the presence of a new geno- and serotype when compared to duck hepatitis virus type 1 type strains. Arch Virol 152, 2059-2072.
16. Koci, M. D. & Schultz-Cherry, S. (2002). Avian astroviruses. Avian Pathol 31, 213-227.
17. Koci, M. D., Seal, B. S. & Schultz-Cherry, S. (2000). Molecular characterization of an avian astrovirus. J Virol 74, 6173-6177.
18. Krishna, N. K. (2005). Identification of structural domains involved in astrovirus capsid biology. Viral Immunol 18, 17-26.
19. Lee, T. W. & Kurtz, J. B. (1994). Prevalence of human astrovirus serotypes in the Oxford region 1976-92, with evidence for two new serotypes. Epidemiol Infect 112, 187-193.
20. Lewis, T. L. & Matsui, S. M. (1996). Astrovirus ribosomal frameshifting in an infection-transfection transient expression system. J Virol 70, 2869-2875.
21. Lewis, T. L., Greenberg, H. B., Herrmann, J. E., Smith, L. S. & Matsui, S. M. (1994). Analysis of astrovirus serotype 1 RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein. J Virol 68, 77-83.
22. Marczinke, B., Bloys, A. J., Brown, T. D. K., Willcocks, M. M., Carter, M. J. & Brierley, I. (1994). The human astrovirus RNA-dependent RNA polymerase coding region is expressed by ribosomal frameshifting. J Virol 68, 5588-5595.
23. Méndez-Toss, M., Romero-Guido, P., Munguía, M. E., Méndez, E. & Arias, C. F. (2000). Molecular analysis of a serotype 8 human astrovirus genome. J Gen Virol 81, 2891-2897.
24. Mittelholzer, C., Hedlund, K., Englund, L., Dietz, H. & Svensson, L. (2003). Molecular characterization of a novel astrovirus associated with disease in mink. J Gen Virol 84, 3087-3094.
25. Monroe, S. S., Carter, M. J., Herrmann, J., Mitchel, D. K. & Sanchez-Fauquier, A. (2005). Astroviridae. In Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses, pp. 859-864. Edited by C. M. Fauquet, A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. California: Elsevier Academic Press.
26. Oh, D. & Schreier, E. (2001). Molecular characterization of human astroviruses in Germany. Arch Virol 146, 443-455.
27. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
28. Silva, P. A., Cardoso, D. D. & Schreier, E. (2006). Molecular characterization of human astroviruses isolated in Brazil, including the complete sequences of astrovirus genotypes 4 and 5. Arch Virol 151, 1405-1417.
29. Stanway, G., Brown, F., Christian, P., Hovi, T., Hyypiä, T., King, A. M. Q., Knowles, N. J., Lemon, S. M., Minor, P. D. & other authors (2005). Picornaviridae. In Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses, pp. 757-778. Edited by C. M. Fauquet, A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. California: Elsevier Academic Press.
30. Strain, E., Kelley, L. A., Schultz-Cherry, S., Muse, S. V. & Koci, M. D. (2008). Genomic analysis of closely related astroviruses. J Virol 82, 5099-5103.
31. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA software version 4.0. Mol Biol Evol 24, 1596-1599.
32. Tang, Y., Murgia, M. V. & Saif, Y. M. (2005). Molecular characterization of the capsid gene of two serotypes of turkey astroviruses. Avian Dis 49, 514-519.
33. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
34. Todd, D., Smyth, V. J., Ball, N. W., Donnelly, B. M., Wylie, M., Knowles, N. J. & Adair, B. M. (2009). Identification of chicken enterovirus-like viruses, duck hepatitis virus (DHV) type 2 and DHV type 3 as astroviruses. Avian Pathol 38, 21-30.
35. Tseng, C. H. & Tsai, H. J. (2007). Molecular characterization of a new serotype of duck hepatitis virus. Virus Res 126, 19-31.
36. Tseng, C. H., Knowles, N. J. & Tsai, H. J. (2007). Molecular analysis of duck hepatitis virus type 1 indicates that it should be assigned to a new genus. Virus Res 123, 190-203.
37. Wang, L., Pan, M., Fu, Y. & Zhang, D. (2008). Classification of duck hepatitis virus into three genotypes based on molecular evolutionary analysis. Virus Genes 37, 52-59.
38. Willcocks, M. M., Brown, T. D. K., Madeley, C. R. & Carter, M. J. (1994). The complete sequence of a human astrovirus. J Gen Virol 75, 1785-1788.